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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 5 cut(s) | 134, 387, 411, 522, 574 |
| AccII | CGCG | 2 cut(s) | 705, 766 |
| AclWI | GGATC | 3 cut(s) | 16, 342, 699 |
| AcoI | YGGCCR | 1 cut(s) | 177 |
| AfaI | GTAC | 2 cut(s) | 219, 606 |
| AfeI | AGCGCT | 1 cut(s) | 38 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 93, 94, 497, 754 |
| AgsI | TTSAA | 3 cut(s) | 148, 188, 241 |
| AluBI | AGCT | 2 cut(s) | 244, 486 |
| AluI | AGCT | 2 cut(s) | 244, 486 |
| Alw26I | GTCTC | 1 cut(s) | 463 |
| AlwI | GGATC | 3 cut(s) | 16, 342, 699 |
| Ama87I | CYCGRG | 3 cut(s) | 171, 391, 548 |
| Aor51HI | AGCGCT | 1 cut(s) | 38 |
| AoxI | GGCC | 3 cut(s) | 69, 177, 579 |
| ApeKI | GCWGC | 3 cut(s) | 124, 460, 617 |
| AspLEI | GCGC | 4 cut(s) | 39, 257, 705, 707 |
| AspS9I | GGNCC | 2 cut(s) | 580, 745 |
| AsuHPI | GGTGA | 3 cut(s) | 554, 577, 623 |
| AvaI | CYCGRG | 3 cut(s) | 171, 391, 548 |
| AvaII | GGWCC | 1 cut(s) | 745 |
| BanII | GRGCYC | 1 cut(s) | 420 |
| BbvI | GCAGC | 3 cut(s) | 111, 447, 604 |
| BccI | CCATC | 5 cut(s) | 15, 134, 375, 626, 747 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 628, 662 |
| BcoDI | GTCTC | 1 cut(s) | 463 |
| BfaI | CTAG | 3 cut(s) | 107, 281, 497 |
| BfoI | RGCGCY | 1 cut(s) | 40 |
| BisI | GCNGC | 8 cut(s) | 125, 128, 363, 388, 412, 461, 618, 701 |
| BlsI | GCNGC | 8 cut(s) | 126, 129, 364, 389, 413, 462, 619, 702 |
| Bme18I | GGWCC | 1 cut(s) | 745 |
| BmeT110I | CYCGRG | 3 cut(s) | 171, 391, 548 |
| BmgT120I | GGNCC | 2 cut(s) | 580, 745 |
| BmiI | GGNNCC | 4 cut(s) | 26, 273, 354, 746 |
| BmsI | GCATC | 1 cut(s) | 495 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 256, 288 |
| BsaJI | CCNNGG | 4 cut(s) | 72, 180, 258, 491 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 93, 94, 497, 754 |
| BseDI | CCNNGG | 4 cut(s) | 72, 180, 258, 491 |
| BseGI | GGATG | 4 cut(s) | 26, 82, 145, 604 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 93, 94, 497, 754 |
| BsePI | GCGCGC | 1 cut(s) | 703 |
| BseXI | GCAGC | 3 cut(s) | 111, 447, 604 |
| Bsh1236I | CGCG | 2 cut(s) | 705, 766 |
| BshFI | GGCC | 3 cut(s) | 71, 179, 581 |
| BsiHKCI | CYCGRG | 3 cut(s) | 171, 391, 548 |
| BsiSI | CCGG | 3 cut(s) | 28, 356, 621 |
| BslFI | GGGAC | 4 cut(s) | 493, 545, 734, 758 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 93, 94, 497, 754 |
| BsmAI | GTCTC | 1 cut(s) | 463 |
| BsmFI | GGGAC | 4 cut(s) | 493, 545, 734, 758 |
| BsnI | GGCC | 3 cut(s) | 71, 179, 581 |
| BsoBI | CYCGRG | 3 cut(s) | 171, 391, 548 |
| Bsp1286I | GDGCHC | 1 cut(s) | 420 |
| Bsp143I | GATC | 5 cut(s) | 8, 283, 334, 544, 691 |
| BspANI | GGCC | 3 cut(s) | 71, 179, 581 |
| BspFNI | CGCG | 2 cut(s) | 705, 766 |
| BspLI | GGNNCC | 4 cut(s) | 26, 273, 354, 746 |
| BspPI | GGATC | 3 cut(s) | 16, 342, 699 |
| BspQI | GCTCTTC | 1 cut(s) | 183 |
| BsrBI | CCGCTC | 5 cut(s) | 134, 387, 411, 522, 574 |
| BssECI | CCNNGG | 4 cut(s) | 72, 180, 258, 491 |
| BssHII | GCGCGC | 1 cut(s) | 703 |
| BssMI | GATC | 5 cut(s) | 8, 283, 334, 544, 691 |
| BssT1I | CCWWGG | 2 cut(s) | 258, 491 |
| Bst6I | CTCTTC | 1 cut(s) | 183 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 713 |
| BstC8I | GCNNGC | 5 cut(s) | 132, 409, 416, 698, 705 |
| BstDEI | CTNAG | 2 cut(s) | 92, 289 |
| BstF5I | GGATG | 4 cut(s) | 26, 82, 145, 604 |
| BstFNI | CGCG | 2 cut(s) | 705, 766 |
| BstH2I | RGCGCY | 1 cut(s) | 40 |
| BstHHI | GCGC | 4 cut(s) | 39, 257, 705, 707 |
| BstKTI | GATC | 5 cut(s) | 11, 286, 337, 547, 694 |
| BstMAI | GTCTC | 1 cut(s) | 463 |
| BstMBI | GATC | 5 cut(s) | 8, 283, 334, 544, 691 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 514, 668, 702, 713, 748 |
| BstNSI | RCATGY | 2 cut(s) | 218, 311 |
| BstUI | CGCG | 2 cut(s) | 705, 766 |
| BstV1I | GCAGC | 3 cut(s) | 111, 447, 604 |
| BsuRI | GGCC | 3 cut(s) | 71, 179, 581 |
| BtgZI | GCGATG | 2 cut(s) | 417, 766 |
| BtsCI | GGATG | 4 cut(s) | 26, 82, 145, 604 |
| Cac8I | GCNNGC | 5 cut(s) | 132, 409, 416, 698, 705 |
| CfoI | GCGC | 4 cut(s) | 39, 257, 705, 707 |
| Cfr13I | GGNCC | 2 cut(s) | 580, 745 |
| CseI | GACGC | 2 cut(s) | 182, 645 |
| Csp6I | GTAC | 2 cut(s) | 218, 605 |
| CviAII | CATG | 4 cut(s) | 215, 230, 308, 683 |
| CviQI | GTAC | 2 cut(s) | 218, 605 |
| DdeI | CTNAG | 2 cut(s) | 92, 289 |
| DpnI | GATC | 5 cut(s) | 10, 285, 336, 546, 693 |
| DpnII | GATC | 5 cut(s) | 8, 283, 334, 544, 691 |
| EaeI | YGGCCR | 1 cut(s) | 177 |
| Eam1104I | CTCTTC | 1 cut(s) | 183 |
| EarI | CTCTTC | 1 cut(s) | 183 |
| Eco130I | CCWWGG | 2 cut(s) | 258, 491 |
| Eco24I | GRGCYC | 1 cut(s) | 420 |
| Eco32I | GATATC | 1 cut(s) | 592 |
| Eco47I | GGWCC | 1 cut(s) | 745 |
| Eco47III | AGCGCT | 1 cut(s) | 38 |
| Eco88I | CYCGRG | 3 cut(s) | 171, 391, 548 |
| EcoO109I | RGGNCCY | 1 cut(s) | 580 |
| EcoRV | GATATC | 1 cut(s) | 592 |
| EcoT14I | CCWWGG | 2 cut(s) | 258, 491 |
| EcoT38I | GRGCYC | 1 cut(s) | 420 |
| ErhI | CCWWGG | 2 cut(s) | 258, 491 |
| FaeI | CATG | 4 cut(s) | 218, 233, 311, 686 |
| FaiI | YATR | 8 cut(s) | 46, 48, 216, 231, 309, 456, 641, 684 |
| FaqI | GGGAC | 4 cut(s) | 493, 545, 734, 758 |
| FatI | CATG | 4 cut(s) | 214, 229, 307, 682 |
| FauI | CCCGC | 6 cut(s) | 109, 407, 501, 515, 567, 735 |
| Fnu4HI | GCNGC | 8 cut(s) | 125, 128, 363, 388, 412, 461, 618, 701 |
| FokI | GGATG | 4 cut(s) | 33, 89, 152, 611 |
| FriOI | GRGCYC | 1 cut(s) | 420 |
| Fsp4HI | GCNGC | 8 cut(s) | 125, 128, 363, 388, 412, 461, 618, 701 |
| FspBI | CTAG | 3 cut(s) | 107, 281, 497 |
| GlaI | GCGC | 4 cut(s) | 38, 256, 704, 706 |
| GluI | GCNGC | 8 cut(s) | 125, 128, 363, 388, 412, 461, 618, 701 |
| HaeII | RGCGCY | 1 cut(s) | 40 |
| HaeIII | GGCC | 3 cut(s) | 71, 179, 581 |
| HapII | CCGG | 3 cut(s) | 28, 356, 621 |
| HgaI | GACGC | 2 cut(s) | 182, 645 |
| HhaI | GCGC | 4 cut(s) | 39, 257, 705, 707 |
| Hin1II | CATG | 4 cut(s) | 218, 233, 311, 686 |
| Hin6I | GCGC | 4 cut(s) | 37, 255, 703, 705 |
| HinP1I | GCGC | 4 cut(s) | 37, 255, 703, 705 |
| HindIII | AAGCTT | 2 cut(s) | 242, 484 |
| HinfI | GANTC | 2 cut(s) | 169, 471 |
| HpaII | CCGG | 3 cut(s) | 28, 356, 621 |
| HphI | GGTGA | 3 cut(s) | 554, 577, 623 |
| Hpy166II | GTNNAC | 1 cut(s) | 341 |
| Hpy188III | TCNNGA | 5 cut(s) | 65, 281, 478, 530, 548 |
| Hpy8I | GTNNAC | 1 cut(s) | 341 |
| HpyAV | CCTTC | 2 cut(s) | 114, 391 |
| HpyCH4V | TGCA | 1 cut(s) | 446 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 514, 668, 702, 713, 748 |
| HpyF3I | CTNAG | 2 cut(s) | 92, 289 |
| Hsp92II | CATG | 4 cut(s) | 218, 233, 311, 686 |
| HspAI | GCGC | 4 cut(s) | 37, 255, 703, 705 |
| Kzo9I | GATC | 5 cut(s) | 8, 283, 334, 544, 691 |
| LguI | GCTCTTC | 1 cut(s) | 183 |
| LmnI | GCTCC | 7 cut(s) | 24, 157, 277, 352, 372, 384, 519 |
| LpnPI | CCDG | 6 cut(s) | 41, 369, 634, 693, 710, 761 |
| Lsp1109I | GCAGC | 3 cut(s) | 111, 447, 604 |
| LweI | GCATC | 1 cut(s) | 495 |
| MaeI | CTAG | 3 cut(s) | 107, 281, 497 |
| MaeIII | GTNAC | 1 cut(s) | 427 |
| MalI | GATC | 5 cut(s) | 10, 285, 336, 546, 693 |
| MbiI | CCGCTC | 5 cut(s) | 134, 387, 411, 522, 574 |
| MboI | GATC | 5 cut(s) | 8, 283, 334, 544, 691 |
| MboII | GAAGA | 1 cut(s) | 200 |
| MhlI | GDGCHC | 1 cut(s) | 420 |
| MlyI | GAGTC | 2 cut(s) | 163, 465 |
| MmeI | TCCRAC | 1 cut(s) | 547 |
| MseI | TTAA | 1 cut(s) | 769 |
| MspA1I | CMGCKG | 1 cut(s) | 700 |
| MspI | CCGG | 3 cut(s) | 28, 356, 621 |
| MvnI | CGCG | 2 cut(s) | 705, 766 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 514, 668, 702, 713, 748 |
| NdeII | GATC | 5 cut(s) | 8, 283, 334, 544, 691 |
| NlaIII | CATG | 4 cut(s) | 218, 233, 311, 686 |
| NlaIV | GGNNCC | 4 cut(s) | 26, 273, 354, 746 |
| NmeAIII | GCCGAG | 3 cut(s) | 97, 205, 259 |
| NmuCI | GTSAC | 1 cut(s) | 427 |
| NspI | RCATGY | 2 cut(s) | 218, 311 |
| PaeR7I | CTCGAG | 1 cut(s) | 548 |
| PauI | GCGCGC | 1 cut(s) | 703 |
| PciSI | GCTCTTC | 1 cut(s) | 183 |
| PkrI | GCNGC | 8 cut(s) | 126, 129, 364, 389, 413, 462, 619, 702 |
| PleI | GAGTC | 2 cut(s) | 163, 465 |
| PpsI | GAGTC | 2 cut(s) | 163, 465 |
| PspN4I | GGNNCC | 4 cut(s) | 26, 273, 354, 746 |
| PspPI | GGNCC | 2 cut(s) | 580, 745 |
| PteI | GCGCGC | 1 cut(s) | 703 |
| RsaI | GTAC | 2 cut(s) | 219, 606 |
| RsaNI | GTAC | 2 cut(s) | 218, 605 |
| SapI | GCTCTTC | 1 cut(s) | 183 |
| SaqAI | TTAA | 1 cut(s) | 769 |
| SatI | GCNGC | 8 cut(s) | 125, 128, 363, 388, 412, 461, 618, 701 |
| Sau3AI | GATC | 5 cut(s) | 8, 283, 334, 544, 691 |
| Sau96I | GGNCC | 2 cut(s) | 580, 745 |
| SchI | GAGTC | 2 cut(s) | 163, 465 |
| SduI | GDGCHC | 1 cut(s) | 420 |
| SetI | ASST | 9 cut(s) | 57, 108, 186, 246, 333, 488, 555, 606, 613 |
| SfaNI | GCATC | 1 cut(s) | 495 |
| Sfr274I | CTCGAG | 1 cut(s) | 548 |
| SinI | GGWCC | 1 cut(s) | 745 |
| SlaI | CTCGAG | 1 cut(s) | 548 |
| SmlI | CTYRAG | 1 cut(s) | 548 |
| SmoI | CTYRAG | 1 cut(s) | 548 |
| SspMI | CTAG | 3 cut(s) | 107, 281, 497 |
| StyI | CCWWGG | 2 cut(s) | 258, 491 |
| TaqI | TCGA | 3 cut(s) | 424, 549, 594 |
| TauI | GCSGC | 5 cut(s) | 130, 365, 390, 414, 703 |
| Tru1I | TTAA | 1 cut(s) | 769 |
| Tru9I | TTAA | 1 cut(s) | 769 |
| TseFI | GTSAC | 1 cut(s) | 427 |
| TseI | GCWGC | 3 cut(s) | 124, 460, 617 |
| Tsp45I | GTSAC | 1 cut(s) | 427 |
| TspDTI | ATGAA | 6 cut(s) | 17, 47, 641, 645, 667, 671 |
| VpaK11BI | GGWCC | 1 cut(s) | 745 |
| XbaI | TCTAGA | 1 cut(s) | 280 |
| XceI | RCATGY | 2 cut(s) | 218, 311 |
| XhoI | CTCGAG | 1 cut(s) | 548 |
| XspI | CTAG | 3 cut(s) | 107, 281, 497 |