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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 160 |
| AciI | CCGC | 3 cut(s) | 141, 280, 337 |
| AclWI | GGATC | 6 cut(s) | 218, 231, 328, 341, 521, 598 |
| AcsI | RAATTY | 1 cut(s) | 11 |
| AdeI | CACNNNGTG | 1 cut(s) | 160 |
| AfaI | GTAC | 3 cut(s) | 90, 210, 553 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 160, 163, 511, 512, 561 |
| AgeI | ACCGGT | 1 cut(s) | 458 |
| AgsI | TTSAA | 1 cut(s) | 569 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 544 |
| AhlI | ACTAGT | 1 cut(s) | 581 |
| AleI | CACNNNNGTG | 1 cut(s) | 603 |
| AluBI | AGCT | 1 cut(s) | 47 |
| AluI | AGCT | 1 cut(s) | 47 |
| Alw26I | GTCTC | 5 cut(s) | 209, 237, 385, 531, 552 |
| AlwI | GGATC | 6 cut(s) | 218, 231, 328, 341, 521, 598 |
| Ama87I | CYCGRG | 1 cut(s) | 212 |
| AoxI | GGCC | 2 cut(s) | 124, 386 |
| ApoI | RAATTY | 1 cut(s) | 11 |
| AsiGI | ACCGGT | 1 cut(s) | 458 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 481, 669 |
| AspA2I | CCTAGG | 1 cut(s) | 227 |
| AspS9I | GGNCC | 4 cut(s) | 125, 150, 386, 417 |
| AsuC2I | CCSGG | 1 cut(s) | 341 |
| AsuHPI | GGTGA | 3 cut(s) | 272, 283, 416 |
| AvaI | CYCGRG | 1 cut(s) | 212 |
| AvaII | GGWCC | 2 cut(s) | 150, 417 |
| AvrII | CCTAGG | 1 cut(s) | 227 |
| BaeGI | GKGCMC | 1 cut(s) | 8 |
| BamHI | GGATCC | 2 cut(s) | 223, 333 |
| BanII | GRGCYC | 1 cut(s) | 506 |
| BauI | CACGAG | 2 cut(s) | 531, 603 |
| BbsI | GAAGAC | 1 cut(s) | 100 |
| BccI | CCATC | 3 cut(s) | 136, 244, 395 |
| BceAI | ACGGC | 1 cut(s) | 267 |
| BcnI | CCSGG | 1 cut(s) | 341 |
| BcoDI | GTCTC | 5 cut(s) | 209, 237, 385, 531, 552 |
| BcuI | ACTAGT | 1 cut(s) | 581 |
| BfaI | CTAG | 2 cut(s) | 228, 582 |
| BlnI | CCTAGG | 1 cut(s) | 227 |
| Bme1390I | CCNGG | 1 cut(s) | 341 |
| Bme18I | GGWCC | 2 cut(s) | 150, 417 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 544 |
| BmeT110I | CYCGRG | 1 cut(s) | 212 |
| BmgT120I | GGNCC | 4 cut(s) | 125, 150, 386, 417 |
| BmiI | GGNNCC | 8 cut(s) | 151, 152, 225, 335, 387, 418, 419, 503 |
| BmrFI | CCNGG | 1 cut(s) | 341 |
| BmsI | GCATC | 2 cut(s) | 128, 453 |
| BpiI | GAAGAC | 1 cut(s) | 100 |
| BpuMI | CCSGG | 1 cut(s) | 341 |
| BsaBI | GATNNNNATC | 1 cut(s) | 66 |
| BsaI | GGTCTC | 3 cut(s) | 209, 237, 552 |
| BsaJI | CCNNGG | 3 cut(s) | 219, 227, 510 |
| BsaWI | WCCGGW | 1 cut(s) | 458 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 160, 163, 511, 512, 561 |
| Bse118I | RCCGGY | 1 cut(s) | 458 |
| Bse3DI | GCAATG | 1 cut(s) | 15 |
| Bse8I | GATNNNNATC | 1 cut(s) | 66 |
| BseDI | CCNNGG | 3 cut(s) | 219, 227, 510 |
| BseGI | GGATG | 2 cut(s) | 67, 406 |
| BseJI | GATNNNNATC | 1 cut(s) | 66 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 160, 163, 511, 512, 561 |
| BseMI | GCAATG | 1 cut(s) | 15 |
| BseSI | GKGCMC | 1 cut(s) | 8 |
| Bsh1285I | CGRYCG | 1 cut(s) | 145 |
| BshFI | GGCC | 2 cut(s) | 126, 388 |
| BshTI | ACCGGT | 1 cut(s) | 458 |
| BsiEI | CGRYCG | 1 cut(s) | 145 |
| BsiHKCI | CYCGRG | 1 cut(s) | 212 |
| BsiSI | CCGG | 3 cut(s) | 340, 398, 459 |
| BslFI | GGGAC | 3 cut(s) | 163, 403, 636 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 160, 163, 511, 512, 561 |
| BsmAI | GTCTC | 5 cut(s) | 209, 237, 385, 531, 552 |
| BsmFI | GGGAC | 3 cut(s) | 163, 403, 636 |
| BsnI | GGCC | 2 cut(s) | 126, 388 |
| Bso31I | GGTCTC | 3 cut(s) | 209, 237, 552 |
| BsoBI | CYCGRG | 1 cut(s) | 212 |
| Bsp1286I | GDGCHC | 2 cut(s) | 8, 506 |
| Bsp143I | GATC | 4 cut(s) | 223, 333, 526, 590 |
| BspACI | CCGC | 3 cut(s) | 141, 280, 337 |
| BspANI | GGCC | 2 cut(s) | 126, 388 |
| BspLI | GGNNCC | 8 cut(s) | 151, 152, 225, 335, 387, 418, 419, 503 |
| BspPI | GGATC | 6 cut(s) | 218, 231, 328, 341, 521, 598 |
| BspTNI | GGTCTC | 3 cut(s) | 209, 237, 552 |
| BsrDI | GCAATG | 1 cut(s) | 15 |
| BsrFI | RCCGGY | 1 cut(s) | 458 |
| BssAI | RCCGGY | 1 cut(s) | 458 |
| BssECI | CCNNGG | 3 cut(s) | 219, 227, 510 |
| BssMI | GATC | 4 cut(s) | 223, 333, 526, 590 |
| BssSI | CACGAG | 2 cut(s) | 531, 603 |
| BssT1I | CCWWGG | 1 cut(s) | 227 |
| Bst2BI | CACGAG | 2 cut(s) | 531, 603 |
| Bst4CI | ACNGT | 1 cut(s) | 437 |
| Bst6I | CTCTTC | 1 cut(s) | 467 |
| BstC8I | GCNNGC | 1 cut(s) | 442 |
| BstDSI | CCRYGG | 1 cut(s) | 510 |
| BstEII | GGTNACC | 2 cut(s) | 271, 461 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 161 |
| BstF5I | GGATG | 2 cut(s) | 67, 406 |
| BstKTI | GATC | 4 cut(s) | 226, 336, 529, 593 |
| BstMAI | GTCTC | 5 cut(s) | 209, 237, 385, 531, 552 |
| BstMBI | GATC | 4 cut(s) | 223, 333, 526, 590 |
| BstMCI | CGRYCG | 1 cut(s) | 145 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 123, 394, 639 |
| BstNSI | RCATGY | 1 cut(s) | 679 |
| BstPI | GGTNACC | 2 cut(s) | 271, 461 |
| BstSCI | CCNGG | 1 cut(s) | 339 |
| BstSLI | GKGCMC | 1 cut(s) | 8 |
| BstV2I | GAAGAC | 1 cut(s) | 100 |
| BstX2I | RGATCY | 3 cut(s) | 223, 333, 590 |
| BstYI | RGATCY | 3 cut(s) | 223, 333, 590 |
| BsuRI | GGCC | 2 cut(s) | 126, 388 |
| BtgI | CCRYGG | 1 cut(s) | 510 |
| BtgZI | GCGATG | 1 cut(s) | 151 |
| BtsCI | GGATG | 2 cut(s) | 67, 406 |
| Cac8I | GCNNGC | 1 cut(s) | 442 |
| Cfr10I | RCCGGY | 1 cut(s) | 458 |
| Cfr13I | GGNCC | 4 cut(s) | 125, 150, 386, 417 |
| Csp6I | GTAC | 3 cut(s) | 89, 209, 552 |
| CspAI | ACCGGT | 1 cut(s) | 458 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 60, 95 |
| CviAII | CATG | 2 cut(s) | 28, 676 |
| CviJI | RGCY | 5 cut(s) | 47, 126, 388, 397, 504 |
| CviKI_1 | RGCY | 5 cut(s) | 47, 126, 388, 397, 504 |
| CviQI | GTAC | 3 cut(s) | 89, 209, 552 |
| DpnI | GATC | 4 cut(s) | 225, 335, 528, 592 |
| DpnII | GATC | 4 cut(s) | 223, 333, 526, 590 |
| DraIII | CACNNNGTG | 1 cut(s) | 160 |
| DriI | GACNNNNNGTC | 1 cut(s) | 544 |
| Eam1104I | CTCTTC | 1 cut(s) | 467 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 544 |
| EarI | CTCTTC | 1 cut(s) | 467 |
| EciI | GGCGGA | 1 cut(s) | 326 |
| Eco130I | CCWWGG | 1 cut(s) | 227 |
| Eco24I | GRGCYC | 1 cut(s) | 506 |
| Eco31I | GGTCTC | 3 cut(s) | 209, 237, 552 |
| Eco47I | GGWCC | 2 cut(s) | 150, 417 |
| Eco88I | CYCGRG | 1 cut(s) | 212 |
| Eco91I | GGTNACC | 2 cut(s) | 271, 461 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 161 |
| EcoO109I | RGGNCCY | 2 cut(s) | 150, 417 |
| EcoO65I | GGTNACC | 2 cut(s) | 271, 461 |
| EcoT14I | CCWWGG | 1 cut(s) | 227 |
| EcoT38I | GRGCYC | 1 cut(s) | 506 |
| ErhI | CCWWGG | 1 cut(s) | 227 |
| FaeI | CATG | 2 cut(s) | 31, 679 |
| FaiI | YATR | 7 cut(s) | 29, 38, 87, 495, 649, 657, 677 |
| FaqI | GGGAC | 3 cut(s) | 163, 403, 636 |
| FatI | CATG | 2 cut(s) | 27, 675 |
| FokI | GGATG | 2 cut(s) | 54, 413 |
| FriOI | GRGCYC | 1 cut(s) | 506 |
| FspBI | CTAG | 2 cut(s) | 228, 582 |
| HaeIII | GGCC | 2 cut(s) | 126, 388 |
| HapII | CCGG | 3 cut(s) | 340, 398, 459 |
| Hin1II | CATG | 2 cut(s) | 31, 679 |
| HindIII | AAGCTT | 1 cut(s) | 45 |
| HinfI | GANTC | 4 cut(s) | 296, 322, 565, 652 |
| HpaII | CCGG | 3 cut(s) | 340, 398, 459 |
| HphI | GGTGA | 3 cut(s) | 272, 283, 416 |
| Hpy166II | GTNNAC | 2 cut(s) | 321, 433 |
| Hpy188III | TCNNGA | 3 cut(s) | 247, 499, 605 |
| Hpy8I | GTNNAC | 2 cut(s) | 321, 433 |
| HpyCH4III | ACNGT | 1 cut(s) | 437 |
| HpyCH4IV | ACGT | 1 cut(s) | 109 |
| HpyCH4V | TGCA | 3 cut(s) | 20, 33, 444 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 123, 394, 639 |
| HpySE526I | ACGT | 1 cut(s) | 109 |
| Hsp92II | CATG | 2 cut(s) | 31, 679 |
| KflI | GGGWCCC | 2 cut(s) | 150, 417 |
| Kzo9I | GATC | 4 cut(s) | 223, 333, 526, 590 |
| LmnI | GCTCC | 2 cut(s) | 178, 501 |
| LpnPI | CCDG | 4 cut(s) | 353, 411, 472, 529 |
| LweI | GCATC | 2 cut(s) | 128, 453 |
| MaeI | CTAG | 2 cut(s) | 228, 582 |
| MaeII | ACGT | 1 cut(s) | 109 |
| MaeIII | GTNAC | 6 cut(s) | 244, 271, 454, 461, 605, 613 |
| MalI | GATC | 4 cut(s) | 225, 335, 528, 592 |
| MboI | GATC | 4 cut(s) | 223, 333, 526, 590 |
| MboII | GAAGA | 3 cut(s) | 105, 474, 484 |
| MflI | RGATCY | 3 cut(s) | 223, 333, 590 |
| MhlI | GDGCHC | 2 cut(s) | 8, 506 |
| MluCI | AATT | 1 cut(s) | 11 |
| MlyI | GAGTC | 1 cut(s) | 316 |
| MmeI | TCCRAC | 1 cut(s) | 156 |
| MroXI | GAANNNNTTC | 2 cut(s) | 481, 669 |
| MseI | TTAA | 1 cut(s) | 369 |
| MslI | CAYNNNNRTG | 1 cut(s) | 603 |
| MspI | CCGG | 3 cut(s) | 340, 398, 459 |
| MspR9I | CCNGG | 1 cut(s) | 341 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 123, 394, 639 |
| NciI | CCSGG | 1 cut(s) | 341 |
| NdeII | GATC | 4 cut(s) | 223, 333, 526, 590 |
| NlaIII | CATG | 2 cut(s) | 31, 679 |
| NlaIV | GGNNCC | 8 cut(s) | 151, 152, 225, 335, 387, 418, 419, 503 |
| NmeAIII | GCCGAG | 1 cut(s) | 414 |
| NmuCI | GTSAC | 3 cut(s) | 244, 271, 605 |
| NspI | RCATGY | 1 cut(s) | 679 |
| OliI | CACNNNNGTG | 1 cut(s) | 603 |
| PdmI | GAANNNNTTC | 2 cut(s) | 481, 669 |
| PfeI | GAWTC | 3 cut(s) | 296, 565, 652 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 160 |
| PinAI | ACCGGT | 1 cut(s) | 458 |
| PleI | GAGTC | 1 cut(s) | 316 |
| PpsI | GAGTC | 1 cut(s) | 316 |
| PpuMI | RGGWCCY | 2 cut(s) | 150, 417 |
| Psp5II | RGGWCCY | 2 cut(s) | 150, 417 |
| PspEI | GGTNACC | 2 cut(s) | 271, 461 |
| PspN4I | GGNNCC | 8 cut(s) | 151, 152, 225, 335, 387, 418, 419, 503 |
| PspPI | GGNCC | 4 cut(s) | 125, 150, 386, 417 |
| PspPPI | RGGWCCY | 2 cut(s) | 150, 417 |
| PsuI | RGATCY | 3 cut(s) | 223, 333, 590 |
| RsaI | GTAC | 3 cut(s) | 90, 210, 553 |
| RsaNI | GTAC | 3 cut(s) | 89, 209, 552 |
| RseI | CAYNNNNRTG | 1 cut(s) | 603 |
| SaqAI | TTAA | 1 cut(s) | 369 |
| Sau3AI | GATC | 4 cut(s) | 223, 333, 526, 590 |
| Sau96I | GGNCC | 4 cut(s) | 125, 150, 386, 417 |
| SchI | GAGTC | 1 cut(s) | 316 |
| ScrFI | CCNGG | 1 cut(s) | 341 |
| SduI | GDGCHC | 2 cut(s) | 8, 506 |
| SetI | ASST | 8 cut(s) | 49, 112, 159, 233, 243, 273, 380, 548 |
| SfaNI | GCATC | 2 cut(s) | 128, 453 |
| SinI | GGWCC | 2 cut(s) | 150, 417 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 603 |
| SpeI | ACTAGT | 1 cut(s) | 581 |
| Sse9I | AATT | 1 cut(s) | 11 |
| SsiI | CCGC | 3 cut(s) | 141, 280, 337 |
| SspMI | CTAG | 2 cut(s) | 228, 582 |
| StyD4I | CCNGG | 1 cut(s) | 339 |
| StyI | CCWWGG | 1 cut(s) | 227 |
| TaaI | ACNGT | 1 cut(s) | 437 |
| TaiI | ACGT | 1 cut(s) | 112 |
| TaqI | TCGA | 2 cut(s) | 325, 447 |
| TaqII | GACCGA | 1 cut(s) | 233 |
| TasI | AATT | 1 cut(s) | 11 |
| TfiI | GAWTC | 3 cut(s) | 296, 565, 652 |
| Tru1I | TTAA | 1 cut(s) | 369 |
| Tru9I | TTAA | 1 cut(s) | 369 |
| TseFI | GTSAC | 3 cut(s) | 244, 271, 605 |
| Tsp45I | GTSAC | 3 cut(s) | 244, 271, 605 |
| TspDTI | ATGAA | 2 cut(s) | 4, 644 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 160 |
| VpaK11BI | GGWCC | 2 cut(s) | 150, 417 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 161 |
| XapI | RAATTY | 1 cut(s) | 11 |
| XceI | RCATGY | 1 cut(s) | 679 |
| XmaJI | CCTAGG | 1 cut(s) | 227 |
| XmnI | GAANNNNTTC | 2 cut(s) | 481, 669 |
| XspI | CTAG | 2 cut(s) | 228, 582 |