Rroxscaffold_5G00332970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000075
Physical Location & Seq
Forward (+)
367243 .. 369274
2032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00332970.1

Sequence Viewer

Length: 1131 bp
ATGGGTGCGTTTCCCAAGGGAGCGAGGGGTTCTATTGCTTGTGCGGTGCTCCCGATTTATGAGAGGTTTGGTATAGGGAAGCGTTCGGCGGATATGCCGAGCGAGGTCCCTAGCAAAAGTGATGCCCCATACGCCGATGTGCATCCCGATACCATTATGATGTTGGTGCTCCGACCTCGCAGAGGTCATCACTACCGACGGTGGGGAGGCGGAGGTGACCATCCGGCCGATGGTGAGACATGTTTGACGGTCGAAGCGCCTAAGGTGCAACCCGAGTCCGGAGAGGGTGTGGTTGGGGTTGCCCAAGTTATCGAGATGGGGACCCACGGCCGGGATGTGGGGGATCACGAGGTTCTCCGGATGAGGTTGCCCGGGGTTGTACGTACCCCGGGCAAGATTGGAATTACCGATGGTGTCATCCTTCATATGGTTGTCGACTCGAGGAATCGTCATGGCGACCGTAGTCGCGTGAATGCCGAGGACCCTCGCCCGGGGTATTGGGAGGCTCGGGAGAGGTTGATGAGGACAAAGCCGGCGCGCAAGCTTCACGGTGTAGTAGATCAAGGCCGGGTGGAGCGAGAGGATACGAGGCTAGTAATTGATGCGTGGATCGCGATGAGGATGGAGCTAGAGAGATCATTTTCCATAGAGGAGGCTCATTGTCAAGAGGCCGAGGGTGCTATCGCTCCATTGAGGGAGGCCAACTTGGATCCGATCGGGAAGCTACAACGGGAGGAGGATGGCCCGAGGTTGGTGGATCAAGTTAGCTCCCGTGTTAGGGCGGCCGAAGAGCTTCGCAAGACTTGGAAAGGCGGTCCGAGAGCTCGATCCCGAGTTGGAGCTGCGTGCGGCAGCCCCGGAAAGTTTGGCTCCCTATCCCGATCGCGTGGTCGACTTGGAGGGCGAGGTTGGGACTCTAGAGGGAGGAGGGTGAGAGGGTGGCGAGAGATGGAGCGGCTCGGGGAAGGAGTTAGCGGAGCAACGAGGCTCGCCCGCAACTTTATCGAGGATTGCATTCGCTTGCGTGCCGCTGCGGAGACATATTTTGACAAGCTCCACAAGGTTAAGCGGGATGGCGCGGAAAAGGCGGTGCATCTCTATCTCCCGTCGCACACTTTCAAGAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

376

Amino Acids

41.86

Weight (kDa)

9.93

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000075)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0348161 RchiOBHm_Chr1g0367481 RchiOBHm_Chr1g0368431 RchiOBHm_Chr2g0116021 RchiOBHm_Chr2g0133961 RchiOBHm_Chr4g0390151 RchiOBHm_Chr4g0402771 RchiOBHm_Chr4g0419581 RchiOBHm_Chr5g0054351 RchiOBHm_Chr6g0278891 RchiOBHm_Chr7g0201941 RchiOBHm_Chr7g0242761
rosa_laevigata RLG00000002487 RLG00000002488 RLG00000003412 RLG00000003415 RLG00000013607 RLG00000018981 RLG00000018982 RLG00000034520 RLG00000034521
rosa_multiflora Rmu_co8024510.1_g000001 Rmu_co8121892.1_g000001 Rmu_co8133046.1_g000001 Rmu_co8158032.1_g000001 Rmu_co8181114.1_g000001 Rmu_co8202532.1_g000001 Rmu_co8331471.1_g000001 Rmu_co8340209.1_g000001 Rmu_co8359899.1_g000001 Rmu_co8433657.1_g000002 Rmu_co8436419.1_g000002 Rmu_co8458211.1_g000002 Rmu_co8458731.1_g000002 Rmu_co8466361.1_g000001 Rmu_co8474565.1_g000001 Rmu_co8474565.1_g000002 Rmu_co8482201.1_g000001 Rmu_co8491967.1_g000003 Rmu_co8498095.1_g000001 Rmu_co8513217.1_g000002 Rmu_co8518257.1_g000001 Rmu_co8520425.1_g000003 Rmu_co8521283.1_g000003 Rmu_sc0000029.1_g000029 Rmu_sc0000082.1_g000019 Rmu_sc0000147.1_g000107 Rmu_sc0000212.1_g000005 Rmu_sc0000247.1_g000030 Rmu_sc0000367.1_g000175 Rmu_sc0000433.1_g000035 Rmu_sc0000538.1_g000038 Rmu_sc0000550.1_g000010 Rmu_sc0000635.1_g000007 Rmu_sc0000650.1_g000012 Rmu_sc0000652.1_g000009 Rmu_sc0000652.1_g000010 Rmu_sc0000742.1_g000010 Rmu_sc0000750.1_g000007 Rmu_sc0000750.1_g000008 Rmu_sc0000772.1_g000018 Rmu_sc0000830.1_g000026 Rmu_sc0000859.1_g000006 Rmu_sc0001190.1_g000039 Rmu_sc0001190.1_g000050 Rmu_sc0001190.1_g000051 Rmu_sc0001205.1_g000008 Rmu_sc0001294.1_g000025 Rmu_sc0001366.1_g000010 Rmu_sc0001373.1_g000036 Rmu_sc0001423.1_g000046 Rmu_sc0001788.1_g000014 Rmu_sc0001801.1_g000016 Rmu_sc0001849.1_g000032 Rmu_sc0001967.1_g000002 Rmu_sc0002082.1_g000066 Rmu_sc0002250.1_g000013 Rmu_sc0002322.1_g000039 Rmu_sc0002371.1_g000002 Rmu_sc0002522.1_g000036 Rmu_sc0002532.1_g000048 Rmu_sc0002669.1_g000065 Rmu_sc0002669.1_g000067 Rmu_sc0002669.1_g000069 Rmu_sc0002834.1_g000007 Rmu_sc0003226.1_g000070 Rmu_sc0003260.1_g000018 Rmu_sc0003313.1_g000007 Rmu_sc0003441.1_g000018 Rmu_sc0003490.1_g000008 Rmu_sc0003705.1_g000011 Rmu_sc0003737.1_g000013 Rmu_sc0003748.1_g000020 Rmu_sc0003910.1_g000015 Rmu_sc0003919.1_g000029 Rmu_sc0003919.1_g000031 Rmu_sc0004037.1_g000012 Rmu_sc0004099.1_g000003 Rmu_sc0004122.1_g000013 Rmu_sc0004402.1_g000013 Rmu_sc0004646.1_g000035 Rmu_sc0004688.1_g000024 Rmu_sc0004823.1_g000046 Rmu_sc0004869.1_g000003 Rmu_sc0004869.1_g000004 Rmu_sc0005132.1_g000035 Rmu_sc0005190.1_g000001 Rmu_sc0005229.1_g000005 Rmu_sc0005229.1_g000023 Rmu_sc0005363.1_g000034 Rmu_sc0005537.1_g000006 Rmu_sc0005657.1_g000024 Rmu_sc0005856.1_g000011 Rmu_sc0005856.1_g000012 Rmu_sc0005953.1_g000007 Rmu_sc0005971.1_g000015 Rmu_sc0006287.1_g000004 Rmu_sc0006315.1_g000014 Rmu_sc0006518.1_g000003 Rmu_sc0006695.1_g000066 Rmu_sc0006803.1_g000056 Rmu_sc0006822.1_g000002 Rmu_sc0006926.1_g000011 Rmu_sc0007560.1_g000008 Rmu_sc0007582.1_g000005 Rmu_sc0007618.1_g000025 Rmu_sc0007647.1_g000004 Rmu_sc0007656.1_g000013 Rmu_sc0007877.1_g000011 Rmu_sc0008528.1_g000005 Rmu_sc0008528.1_g000006 Rmu_sc0008749.1_g000004 Rmu_sc0008989.1_g000003 Rmu_sc0009120.1_g000010 Rmu_sc0009663.1_g000009 Rmu_sc0010035.1_g000001 Rmu_sc0010160.1_g000010 Rmu_sc0010160.1_g000011 Rmu_sc0010953.1_g000004 Rmu_sc0011008.1_g000006 Rmu_sc0011452.1_g000009 Rmu_sc0012746.1_g000014 Rmu_sc0013612.1_g000017 Rmu_sc0013951.1_g000011 Rmu_sc0014162.1_g000009 Rmu_sc0014162.1_g000010 Rmu_sc0016149.1_g000003 Rmu_sc0016418.1_g000008 Rmu_sc0016418.1_g000009 Rmu_sc0017353.1_g000001 Rmu_sc0017353.1_g000002 Rmu_sc0018537.1_g000012 Rmu_sc0019739.1_g000003 Rmu_sc0019739.1_g000004 Rmu_sc0020186.1_g000016 Rmu_sc0021611.1_g000001 Rmu_sc0022755.1_g000003 Rmu_sc0024226.1_g000006 Rmu_sc0025769.1_g000004 Rmu_sc0025769.1_g000005 Rmu_sc0030235.1_g000004 Rmu_sc0035508.1_g000007 Rmu_sc0036413.1_g000001 Rmu_sc0037646.1_g000001 Rmu_sc0037646.1_g000002 Rmu_sc0037647.1_g000001 Rmu_sc0037647.1_g000002 Rmu_sc0037678.1_g000001 Rmu_ssc0000072.1_g000010 Rmu_ssc0000116.1_g000041 Rmu_ssc0000127.1_g000018 Rmu_ssc0000175.1_g000018 Rmu_ssc0000175.1_g000019 Rmu_ssc0000175.1_g000020 Rmu_ssc0000197.1_g000037 Rmu_ssc0000213.1_g000051 Rmu_ssc0000359.1_g000008 Rmu_ssc0000392.1_g000019
rosa_roxburghii Rroxscaffold_154G00447930 Rroxscaffold_1G00000570 Rroxscaffold_1G00009890 Rroxscaffold_1G00012210 Rroxscaffold_1G00012960 Rroxscaffold_1G00014650 Rroxscaffold_1G00014660 Rroxscaffold_1G00014670 Rroxscaffold_1G00022880 Rroxscaffold_1G00024640 Rroxscaffold_1G00024650 Rroxscaffold_1G00025670 Rroxscaffold_1G00025680 Rroxscaffold_1G00025690 Rroxscaffold_1G00030660 Rroxscaffold_1G00031340 Rroxscaffold_1G00031350 Rroxscaffold_2G00103100 Rroxscaffold_2G00103120 Rroxscaffold_2G00107390 Rroxscaffold_2G00108940 Rroxscaffold_2G00110610 Rroxscaffold_2G00110620 Rroxscaffold_2G00110710 Rroxscaffold_2G00110720 Rroxscaffold_2G00110730 Rroxscaffold_2G00111170 Rroxscaffold_2G00111510 Rroxscaffold_2G00114750 Rroxscaffold_2G00114760 Rroxscaffold_2G00114770 Rroxscaffold_2G00116270 Rroxscaffold_2G00121090 Rroxscaffold_2G00129350 Rroxscaffold_2G00130410 Rroxscaffold_2G00155930 Rroxscaffold_3G00218120 Rroxscaffold_3G00218330 Rroxscaffold_3G00218340 Rroxscaffold_3G00227530 Rroxscaffold_3G00233140 Rroxscaffold_3G00236800 Rroxscaffold_3G00242370 Rroxscaffold_3G00242380 Rroxscaffold_3G00242410 Rroxscaffold_3G00248720 Rroxscaffold_3G00248730 Rroxscaffold_3G00248770 Rroxscaffold_3G00258550 Rroxscaffold_3G00258560 Rroxscaffold_4G00287000 Rroxscaffold_4G00289070 Rroxscaffold_4G00289080 Rroxscaffold_4G00289100 Rroxscaffold_4G00295600 Rroxscaffold_4G00298090 Rroxscaffold_4G00308330 Rroxscaffold_4G00310570 Rroxscaffold_4G00310580 Rroxscaffold_4G00310620 Rroxscaffold_4G00315750 Rroxscaffold_4G00319620 Rroxscaffold_4G00319630 Rroxscaffold_4G00328870 Rroxscaffold_4G00328880 Rroxscaffold_4G00332120 Rroxscaffold_4G00332310 Rroxscaffold_5G00332660 Rroxscaffold_5G00332710 Rroxscaffold_5G00332970 Rroxscaffold_5G00344920 Rroxscaffold_5G00345540 Rroxscaffold_5G00346760 Rroxscaffold_5G00346770 Rroxscaffold_5G00347420 Rroxscaffold_5G00350360 Rroxscaffold_5G00350370 Rroxscaffold_5G00354490 Rroxscaffold_5G00370760 Rroxscaffold_5G00370770 Rroxscaffold_5G00374010 Rroxscaffold_5G00374020 Rroxscaffold_5G00374490 Rroxscaffold_5G00374510 Rroxscaffold_5G00387640 Rroxscaffold_5G00387650 Rroxscaffold_6G00387870 Rroxscaffold_6G00388560 Rroxscaffold_6G00388570 Rroxscaffold_6G00388670 Rroxscaffold_6G00388680 Rroxscaffold_6G00391960 Rroxscaffold_6G00393010 Rroxscaffold_6G00395010 Rroxscaffold_6G00395020 Rroxscaffold_6G00397990 Rroxscaffold_6G00401460 Rroxscaffold_6G00407850 Rroxscaffold_6G00423090 Rroxscaffold_6G00423100 Rroxscaffold_6G00423110 Rroxscaffold_7G00165960 Rroxscaffold_7G00165970 Rroxscaffold_7G00176270 Rroxscaffold_7G00176280 Rroxscaffold_7G00176600 Rroxscaffold_7G00176610 Rroxscaffold_7G00176620 Rroxscaffold_7G00176660 Rroxscaffold_7G00195710
rosa_rugosa Rorug03G0209000 Rorug05G0468000 Rorug05G0468000
rosa_samantha Rh3AG250900 Rh3AG257700 Rh3BG294700 Rh3CG284700 Rh3CG284800 Rh3DG280200 Rh3DG280300 Rh3DG280500 Rh3DG287600 Rh3DG287700 Rh4BG408500 Rh4DG402700 Rh6CG194400 Rh6CG194600 Rh6DG186400 Rh6DG186500 Rh7AG218100 Rh7AG278800 Rh7BG224200 Rh7CG231300 Rh7CG231400 Rh7DG225400
rosa_wichuraiana Rw3G022640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 955
AccI GTMKAC 2 cut(s) 435, 892
AccII CGCG 5 cut(s) 468, 538, 614, 886, 1079
AccIII TCCGGA 2 cut(s) 278, 357
AclWI GGATC 6 cut(s) 351, 617, 704, 717, 765, 822
AcoI YGGCCR 3 cut(s) 225, 328, 783
AfaI GTAC 2 cut(s) 381, 385
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 1 cut(s) 1120
AluBI AGCT 8 cut(s) 544, 628, 724, 768, 793, 824, 842, 1054
AluI AGCT 8 cut(s) 544, 628, 724, 768, 793, 824, 842, 1054
Alw21I GWGCWC 3 cut(s) 51, 171, 826
Alw26I GTCTC 2 cut(s) 230, 1031
AlwI GGATC 6 cut(s) 351, 617, 704, 717, 765, 822
Ama87I CYCGRG 9 cut(s) 272, 371, 388, 439, 490, 507, 745, 831, 959
Aor13HI TCCGGA 2 cut(s) 278, 357
AoxI GGCC 7 cut(s) 225, 328, 565, 669, 699, 742, 783
ApeKI GCWGC 3 cut(s) 842, 852, 1031
Asp700I GAANNNNTTC 1 cut(s) 792
AspLEI GCGC 4 cut(s) 259, 538, 540, 1079
AspS9I GGNCC 5 cut(s) 106, 321, 481, 743, 815
AsuC2I CCSGG 9 cut(s) 332, 372, 373, 389, 390, 491, 492, 569, 858
AsuHPI GGTGA 3 cut(s) 227, 245, 943
AvaI CYCGRG 9 cut(s) 272, 371, 388, 439, 490, 507, 745, 831, 959
AvaII GGWCC 4 cut(s) 106, 321, 481, 815
AxyI CCTNAGG 1 cut(s) 261
BamHI GGATCC 1 cut(s) 709
BanII GRGCYC 1 cut(s) 826
BauI CACGAG 1 cut(s) 347
Bbv12I GWGCWC 3 cut(s) 51, 171, 826
BbvI GCAGC 3 cut(s) 829, 864, 1018
BccI CCATC 8 cut(s) 224, 228, 310, 404, 616, 734, 943, 1067
BceAI ACGGC 1 cut(s) 343
BcgI CGANNNNNNTGC 2 cut(s) 985, 1019
BciVI GTATCC 1 cut(s) 577
BcnI CCSGG 9 cut(s) 332, 372, 373, 389, 390, 491, 492, 569, 858
BcoDI GTCTC 2 cut(s) 230, 1031
BfaI CTAG 4 cut(s) 111, 593, 629, 918
BfoI RGCGCY 1 cut(s) 260
BfuI GTATCC 1 cut(s) 577
BisI GCNGC 7 cut(s) 783, 843, 850, 853, 956, 1029, 1032
BlsI GCNGC 7 cut(s) 784, 844, 851, 854, 957, 1030, 1033
Bme1390I CCNGG 9 cut(s) 332, 372, 373, 389, 390, 491, 492, 569, 858
Bme18I GGWCC 4 cut(s) 106, 321, 481, 815
BmeT110I CYCGRG 9 cut(s) 272, 371, 388, 439, 490, 507, 745, 831, 959
BmgT120I GGNCC 5 cut(s) 106, 321, 481, 743, 815
BmiI GGNNCC 6 cut(s) 108, 322, 323, 483, 711, 871
BmrFI CCNGG 9 cut(s) 332, 372, 373, 389, 390, 491, 492, 569, 858
BmsI GCATC 4 cut(s) 112, 151, 592, 1102
BoxI GACNNNNGTC 1 cut(s) 462
BpuMI CCSGG 9 cut(s) 332, 372, 373, 389, 390, 491, 492, 569, 858
BsaAI YACGTR 1 cut(s) 383
BsaBI GATNNNNATC 1 cut(s) 141
BsaWI WCCGGW 2 cut(s) 278, 357
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bse118I RCCGGY 1 cut(s) 532
Bse21I CCTNAGG 1 cut(s) 261
Bse8I GATNNNNATC 1 cut(s) 141
BseAI TCCGGA 2 cut(s) 278, 357
BseGI GGATG 8 cut(s) 142, 220, 340, 366, 417, 627, 745, 1078
BseJI GATNNNNATC 1 cut(s) 141
BsePI GCGCGC 1 cut(s) 536
BseRI GAGGAG 3 cut(s) 665, 749, 940
BseX3I CGGCCG 3 cut(s) 225, 328, 783
BseXI GCAGC 3 cut(s) 829, 864, 1018
Bsh1236I CGCG 5 cut(s) 468, 538, 614, 886, 1079
Bsh1285I CGRYCG 7 cut(s) 228, 252, 331, 460, 717, 786, 884
BshFI GGCC 7 cut(s) 227, 330, 567, 671, 701, 744, 785
BsiEI CGRYCG 7 cut(s) 228, 252, 331, 460, 717, 786, 884
BsiHKAI GWGCWC 3 cut(s) 51, 171, 826
BsiHKCI CYCGRG 9 cut(s) 272, 371, 388, 439, 490, 507, 745, 831, 959
BslFI GGGAC 3 cut(s) 92, 334, 926
BsmAI GTCTC 2 cut(s) 230, 1031
BsmFI GGGAC 3 cut(s) 92, 334, 926
BsmI GAATGC 2 cut(s) 478, 1014
BsnI GGCC 7 cut(s) 227, 330, 567, 671, 701, 744, 785
BsoBI CYCGRG 9 cut(s) 272, 371, 388, 439, 490, 507, 745, 831, 959
Bsp1286I GDGCHC 3 cut(s) 51, 171, 826
Bsp13I TCCGGA 2 cut(s) 278, 357
Bsp143I GATC 9 cut(s) 343, 559, 609, 635, 709, 714, 757, 827, 881
Bsp68I TCGCGA 1 cut(s) 614
BspANI GGCC 7 cut(s) 227, 330, 567, 671, 701, 744, 785
BspEI TCCGGA 2 cut(s) 278, 357
BspFNI CGCG 5 cut(s) 468, 538, 614, 886, 1079
BspLI GGNNCC 6 cut(s) 108, 322, 323, 483, 711, 871
BspPI GGATC 6 cut(s) 351, 617, 704, 717, 765, 822
BspQI GCTCTTC 1 cut(s) 783
BsrBI CCGCTC 1 cut(s) 955
BsrFI RCCGGY 1 cut(s) 532
BssAI RCCGGY 1 cut(s) 532
BssHII GCGCGC 1 cut(s) 536
BssMI GATC 9 cut(s) 343, 559, 609, 635, 709, 714, 757, 827, 881
BssSI CACGAG 1 cut(s) 347
BssT1I CCWWGG 1 cut(s) 15
Bst2BI CACGAG 1 cut(s) 347
Bst4CI ACNGT 4 cut(s) 201, 250, 461, 551
Bst6I CTCTTC 1 cut(s) 783
BstBAI YACGTR 1 cut(s) 383
BstC8I GCNNGC 8 cut(s) 534, 538, 542, 847, 990, 994, 1022, 1026
BstDEI CTNAG 1 cut(s) 261
BstDSI CCRYGG 1 cut(s) 325
BstEII GGTNACC 1 cut(s) 215
BstENI CCTNNNNNAGG 1 cut(s) 180
BstF5I GGATG 8 cut(s) 142, 220, 340, 366, 417, 627, 745, 1078
BstFNI CGCG 5 cut(s) 468, 538, 614, 886, 1079
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 4 cut(s) 259, 538, 540, 1079
BstKTI GATC 9 cut(s) 346, 562, 612, 638, 712, 717, 760, 830, 884
BstMAI GTCTC 2 cut(s) 230, 1031
BstMBI GATC 9 cut(s) 343, 559, 609, 635, 709, 714, 757, 827, 881
BstMCI CGRYCG 7 cut(s) 228, 252, 331, 460, 717, 786, 884
BstMWI GCNNNNNNNGC 5 cut(s) 131, 265, 611, 677, 1085
BstNSI RCATGY 1 cut(s) 243
BstPAI GACNNNNGTC 1 cut(s) 462
BstPI GGTNACC 1 cut(s) 215
BstSCI CCNGG 9 cut(s) 330, 370, 371, 387, 388, 489, 490, 567, 856
BstSNI TACGTA 1 cut(s) 383
BstUI CGCG 5 cut(s) 468, 538, 614, 886, 1079
BstV1I GCAGC 3 cut(s) 829, 864, 1018
BstX2I RGATCY 1 cut(s) 709
BstYI RGATCY 1 cut(s) 709
BstZI CGGCCG 3 cut(s) 225, 328, 783
Bsu36I CCTNAGG 1 cut(s) 261
BsuI GTATCC 1 cut(s) 577
BsuRI GGCC 7 cut(s) 227, 330, 567, 671, 701, 744, 785
BtgI CCRYGG 1 cut(s) 325
BtgZI GCGATG 1 cut(s) 629
BtsCI GGATG 8 cut(s) 142, 220, 340, 366, 417, 627, 745, 1078
BtuMI TCGCGA 1 cut(s) 614
Cac8I GCNNGC 8 cut(s) 534, 538, 542, 847, 990, 994, 1022, 1026
CfoI GCGC 4 cut(s) 259, 538, 540, 1079
Cfr10I RCCGGY 1 cut(s) 532
Cfr13I GGNCC 5 cut(s) 106, 321, 481, 743, 815
Cfr9I CCCGGG 3 cut(s) 371, 388, 490
CpoI CGGWCCG 1 cut(s) 815
Csp6I GTAC 2 cut(s) 380, 384
CspI CGGWCCG 1 cut(s) 815
CviAII CATG 2 cut(s) 240, 452
CviQI GTAC 2 cut(s) 380, 384
DdeI CTNAG 1 cut(s) 261
DpnI GATC 9 cut(s) 345, 561, 611, 637, 711, 716, 759, 829, 883
DpnII GATC 9 cut(s) 343, 559, 609, 635, 709, 714, 757, 827, 881
EaeI YGGCCR 3 cut(s) 225, 328, 783
EagI CGGCCG 3 cut(s) 225, 328, 783
Eam1104I CTCTTC 1 cut(s) 783
EarI CTCTTC 1 cut(s) 783
EciI GGCGGA 2 cut(s) 104, 225
Ecl136II GAGCTC 1 cut(s) 824
EclXI CGGCCG 3 cut(s) 225, 328, 783
Eco105I TACGTA 1 cut(s) 383
Eco130I CCWWGG 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 826
Eco47I GGWCC 4 cut(s) 106, 321, 481, 815
Eco52I CGGCCG 3 cut(s) 225, 328, 783
Eco53kI GAGCTC 1 cut(s) 824
Eco81I CCTNAGG 1 cut(s) 261
Eco88I CYCGRG 9 cut(s) 272, 371, 388, 439, 490, 507, 745, 831, 959
Eco91I GGTNACC 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 824
EcoNI CCTNNNNNAGG 1 cut(s) 180
EcoO109I RGGNCCY 3 cut(s) 106, 321, 481
EcoO65I GGTNACC 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 826
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 2 cut(s) 243, 455
FaqI GGGAC 3 cut(s) 92, 334, 926
FatI CATG 2 cut(s) 239, 451
FauI CCCGC 2 cut(s) 1001, 1062
FauNDI CATATG 1 cut(s) 426
FblI GTMKAC 2 cut(s) 435, 892
Fnu4HI GCNGC 7 cut(s) 783, 843, 850, 853, 956, 1029, 1032
FokI GGATG 8 cut(s) 129, 207, 347, 373, 404, 634, 752, 1085
FriOI GRGCYC 1 cut(s) 826
Fsp4HI GCNGC 7 cut(s) 783, 843, 850, 853, 956, 1029, 1032
FspBI CTAG 4 cut(s) 111, 593, 629, 918
GlaI GCGC 4 cut(s) 258, 537, 539, 1078
GluI GCNGC 7 cut(s) 783, 843, 850, 853, 956, 1029, 1032
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 7 cut(s) 227, 330, 567, 671, 701, 744, 785
HhaI GCGC 4 cut(s) 259, 538, 540, 1079
Hin1II CATG 2 cut(s) 243, 455
Hin6I GCGC 4 cut(s) 257, 536, 538, 1077
HinP1I GCGC 4 cut(s) 257, 536, 538, 1077
HincII GTYRAC 2 cut(s) 436, 893
HindII GTYRAC 2 cut(s) 436, 893
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 4 cut(s) 275, 437, 445, 914
HphI GGTGA 3 cut(s) 227, 245, 943
Hpy166II GTNNAC 2 cut(s) 436, 893
Hpy188I TCNGA 3 cut(s) 173, 714, 819
Hpy8I GTNNAC 2 cut(s) 436, 893
Hpy99I CGWCG 2 cut(s) 201, 1111
HpyAV CCTTC 2 cut(s) 431, 959
HpyCH4III ACNGT 4 cut(s) 201, 250, 461, 551
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 4 cut(s) 142, 268, 1014, 1093
HpyF10VI GCNNNNNNNGC 5 cut(s) 131, 265, 611, 677, 1085
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 2 cut(s) 243, 455
HspAI GCGC 4 cut(s) 257, 536, 538, 1077
KflI GGGWCCC 1 cut(s) 321
Kpn2I TCCGGA 2 cut(s) 278, 357
KroI GCCGGC 1 cut(s) 532
KroNI GCCGGC 1 cut(s) 534
Kzo9I GATC 9 cut(s) 343, 559, 609, 635, 709, 714, 757, 827, 881
LguI GCTCTTC 1 cut(s) 783
Lsp1109I GCAGC 3 cut(s) 829, 864, 1018
LweI GCATC 4 cut(s) 112, 151, 592, 1102
MaeI CTAG 4 cut(s) 111, 593, 629, 918
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 215
MalI GATC 9 cut(s) 345, 561, 611, 637, 711, 716, 759, 829, 883
MbiI CCGCTC 1 cut(s) 955
MboI GATC 9 cut(s) 343, 559, 609, 635, 709, 714, 757, 827, 881
MboII GAAGA 1 cut(s) 800
MflI RGATCY 1 cut(s) 709
MhlI GDGCHC 3 cut(s) 51, 171, 826
MluCI AATT 2 cut(s) 402, 597
MlyI GAGTC 3 cut(s) 284, 431, 908
MmeI TCCRAC 2 cut(s) 196, 817
MroI TCCGGA 2 cut(s) 278, 357
MroNI GCCGGC 1 cut(s) 532
MroXI GAANNNNTTC 1 cut(s) 792
MseI TTAA 1 cut(s) 1065
MslI CAYNNNNRTG 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 1031
MspR9I CCNGG 9 cut(s) 332, 372, 373, 389, 390, 491, 492, 569, 858
Mva1269I GAATGC 2 cut(s) 478, 1014
MvnI CGCG 5 cut(s) 468, 538, 614, 886, 1079
MwoI GCNNNNNNNGC 5 cut(s) 131, 265, 611, 677, 1085
NaeI GCCGGC 1 cut(s) 534
NciI CCSGG 9 cut(s) 332, 372, 373, 389, 390, 491, 492, 569, 858
NdeI CATATG 1 cut(s) 426
NdeII GATC 9 cut(s) 343, 559, 609, 635, 709, 714, 757, 827, 881
NgoMIV GCCGGC 1 cut(s) 532
NlaIII CATG 2 cut(s) 243, 455
NlaIV GGNNCC 6 cut(s) 108, 322, 323, 483, 711, 871
NmeAIII GCCGAG 3 cut(s) 123, 502, 697
NmuCI GTSAC 1 cut(s) 215
NruI TCGCGA 1 cut(s) 614
NspI RCATGY 1 cut(s) 243
PaeR7I CTCGAG 1 cut(s) 439
PauI GCGCGC 1 cut(s) 536
PciI ACATGT 1 cut(s) 239
PciSI GCTCTTC 1 cut(s) 783
PctI GAATGC 2 cut(s) 478, 1014
PdiI GCCGGC 1 cut(s) 534
PdmI GAANNNNTTC 1 cut(s) 792
PfeI GAWTC 1 cut(s) 445
PkrI GCNGC 7 cut(s) 784, 844, 851, 854, 957, 1030, 1033
Ple19I CGATCG 2 cut(s) 717, 884
PleI GAGTC 3 cut(s) 283, 431, 908
PpsI GAGTC 3 cut(s) 283, 431, 908
Ppu21I YACGTR 1 cut(s) 383
PpuMI RGGWCCY 3 cut(s) 106, 321, 481
PscI ACATGT 1 cut(s) 239
PshAI GACNNNNGTC 1 cut(s) 462
Psp124BI GAGCTC 1 cut(s) 826
Psp5II RGGWCCY 3 cut(s) 106, 321, 481
PspEI GGTNACC 1 cut(s) 215
PspN4I GGNNCC 6 cut(s) 108, 322, 323, 483, 711, 871
PspPI GGNCC 5 cut(s) 106, 321, 481, 743, 815
PspPPI RGGWCCY 3 cut(s) 106, 321, 481
PspXI VCTCGAGB 1 cut(s) 439
PsuI RGATCY 1 cut(s) 709
PteI GCGCGC 1 cut(s) 536
PvuI CGATCG 2 cut(s) 717, 884
RruI TCGCGA 1 cut(s) 614
RsaI GTAC 2 cut(s) 381, 385
RsaNI GTAC 2 cut(s) 380, 384
RseI CAYNNNNRTG 1 cut(s) 158
Rsr2I CGGWCCG 1 cut(s) 815
RsrII CGGWCCG 1 cut(s) 815
SacI GAGCTC 1 cut(s) 826
SalI GTCGAC 2 cut(s) 434, 891
SapI GCTCTTC 1 cut(s) 783
SaqAI TTAA 1 cut(s) 1065
SatI GCNGC 7 cut(s) 783, 843, 850, 853, 956, 1029, 1032
Sau3AI GATC 9 cut(s) 343, 559, 609, 635, 709, 714, 757, 827, 881
Sau96I GGNCC 5 cut(s) 106, 321, 481, 743, 815
SchI GAGTC 3 cut(s) 284, 431, 908
ScrFI CCNGG 9 cut(s) 332, 372, 373, 389, 390, 491, 492, 569, 858
SduI GDGCHC 3 cut(s) 51, 171, 826
SfaNI GCATC 4 cut(s) 112, 151, 592, 1102
Sfr274I CTCGAG 1 cut(s) 439
SinI GGWCC 4 cut(s) 106, 321, 481, 815
SlaI CTCGAG 1 cut(s) 439
SmaI CCCGGG 3 cut(s) 373, 390, 492
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 439
SmoI CTYRAG 1 cut(s) 439
SnaBI TACGTA 1 cut(s) 383
Sse9I AATT 2 cut(s) 402, 597
SspMI CTAG 4 cut(s) 111, 593, 629, 918
SstI GAGCTC 1 cut(s) 826
StyD4I CCNGG 9 cut(s) 330, 370, 371, 387, 388, 489, 490, 567, 856
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 4 cut(s) 201, 250, 461, 551
TaiI ACGT 1 cut(s) 385
TaqI TCGA 7 cut(s) 252, 312, 435, 440, 826, 892, 1005
TasI AATT 2 cut(s) 402, 597
TauI GCSGC 4 cut(s) 785, 852, 958, 1031
TfiI GAWTC 1 cut(s) 445
Tru1I TTAA 1 cut(s) 1065
Tru9I TTAA 1 cut(s) 1065
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 3 cut(s) 842, 852, 1031
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 413
TspMI CCCGGG 3 cut(s) 371, 388, 490
VpaK11BI GGWCC 4 cut(s) 106, 321, 481, 815
XagI CCTNNNNNAGG 1 cut(s) 180
XbaI TCTAGA 1 cut(s) 917
XceI RCATGY 1 cut(s) 243
XcmI CCANNNNNNNNNTGG 2 cut(s) 160, 227
XhoI CTCGAG 1 cut(s) 439
XmaI CCCGGG 3 cut(s) 371, 388, 490
XmiI GTMKAC 2 cut(s) 435, 892
XmnI GAANNNNTTC 1 cut(s) 792
XspI CTAG 4 cut(s) 111, 593, 629, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.