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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 79 |
| AciI | CCGC | 2 cut(s) | 79, 352 |
| AcoI | YGGCCR | 1 cut(s) | 69 |
| AdeI | CACNNNGTG | 1 cut(s) | 187 |
| AfaI | GTAC | 3 cut(s) | 124, 175, 363 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 78 |
| AflII | CTTAAG | 1 cut(s) | 152 |
| AgsI | TTSAA | 1 cut(s) | 271 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 221, 253 |
| AluBI | AGCT | 3 cut(s) | 46, 93, 151 |
| AluI | AGCT | 3 cut(s) | 46, 93, 151 |
| Alw26I | GTCTC | 3 cut(s) | 87, 128, 371 |
| Ama87I | CYCGRG | 2 cut(s) | 84, 368 |
| AoxI | GGCC | 1 cut(s) | 69 |
| AsuHPI | GGTGA | 1 cut(s) | 198 |
| AsuNHI | GCTAGC | 1 cut(s) | 89 |
| AvaI | CYCGRG | 2 cut(s) | 84, 368 |
| BalI | TGGCCA | 1 cut(s) | 71 |
| BccI | CCATC | 2 cut(s) | 164, 220 |
| BceAI | ACGGC | 1 cut(s) | 324 |
| BcoDI | GTCTC | 3 cut(s) | 87, 128, 371 |
| BfaI | CTAG | 3 cut(s) | 47, 90, 312 |
| BfrI | CTTAAG | 1 cut(s) | 152 |
| BisI | GCNGC | 1 cut(s) | 353 |
| BlsI | GCNGC | 1 cut(s) | 354 |
| BmeT110I | CYCGRG | 2 cut(s) | 84, 368 |
| BmsI | GCATC | 1 cut(s) | 308 |
| BmtI | GCTAGC | 1 cut(s) | 93 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 224, 256 |
| BsaAI | YACGTR | 1 cut(s) | 122 |
| BsaBI | GATNNNNATC | 1 cut(s) | 195 |
| BsaI | GGTCTC | 2 cut(s) | 87, 128 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 78 |
| Bse8I | GATNNNNATC | 1 cut(s) | 195 |
| BseGI | GGATG | 4 cut(s) | 43, 175, 196, 235 |
| BseJI | GATNNNNATC | 1 cut(s) | 195 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 78 |
| BseRI | GAGGAG | 1 cut(s) | 56 |
| BshFI | GGCC | 1 cut(s) | 71 |
| BsiHKCI | CYCGRG | 2 cut(s) | 84, 368 |
| BsiWI | CGTACG | 2 cut(s) | 122, 361 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 78 |
| BsmAI | GTCTC | 3 cut(s) | 87, 128, 371 |
| BsmBI | CGTCTC | 1 cut(s) | 371 |
| BsmI | GAATGC | 1 cut(s) | 111 |
| BsnI | GGCC | 1 cut(s) | 71 |
| Bso31I | GGTCTC | 2 cut(s) | 87, 128 |
| BsoBI | CYCGRG | 2 cut(s) | 84, 368 |
| Bsp143I | GATC | 1 cut(s) | 303 |
| BspACI | CCGC | 2 cut(s) | 79, 352 |
| BspANI | GGCC | 1 cut(s) | 71 |
| BspOI | GCTAGC | 1 cut(s) | 93 |
| BspTI | CTTAAG | 1 cut(s) | 152 |
| BspTNI | GGTCTC | 2 cut(s) | 87, 128 |
| BsrBI | CCGCTC | 1 cut(s) | 79 |
| BssMI | GATC | 1 cut(s) | 303 |
| BstAFI | CTTAAG | 1 cut(s) | 152 |
| BstBAI | YACGTR | 1 cut(s) | 122 |
| BstC8I | GCNNGC | 2 cut(s) | 91, 129 |
| BstF5I | GGATG | 4 cut(s) | 43, 175, 196, 235 |
| BstKTI | GATC | 1 cut(s) | 306 |
| BstMAI | GTCTC | 3 cut(s) | 87, 128, 371 |
| BstMBI | GATC | 1 cut(s) | 303 |
| BstSNI | TACGTA | 1 cut(s) | 122 |
| BsuRI | GGCC | 1 cut(s) | 71 |
| BtsCI | GGATG | 4 cut(s) | 43, 175, 196, 235 |
| BtsIMutI | CAGTG | 1 cut(s) | 99 |
| Cac8I | GCNNGC | 2 cut(s) | 91, 129 |
| Csp6I | GTAC | 3 cut(s) | 123, 174, 362 |
| CviJI | RGCY | 7 cut(s) | 46, 71, 89, 93, 151, 161, 311 |
| CviKI_1 | RGCY | 7 cut(s) | 46, 71, 89, 93, 151, 161, 311 |
| CviQI | GTAC | 3 cut(s) | 123, 174, 362 |
| DpnI | GATC | 1 cut(s) | 305 |
| DpnII | GATC | 1 cut(s) | 303 |
| DraIII | CACNNNGTG | 1 cut(s) | 187 |
| EaeI | YGGCCR | 1 cut(s) | 69 |
| Eco105I | TACGTA | 1 cut(s) | 122 |
| Eco31I | GGTCTC | 2 cut(s) | 87, 128 |
| Eco88I | CYCGRG | 2 cut(s) | 84, 368 |
| Esp3I | CGTCTC | 1 cut(s) | 371 |
| FaiI | YATR | 1 cut(s) | 255 |
| Fnu4HI | GCNGC | 1 cut(s) | 353 |
| FokI | GGATG | 4 cut(s) | 50, 182, 203, 242 |
| Fsp4HI | GCNGC | 1 cut(s) | 353 |
| FspBI | CTAG | 3 cut(s) | 47, 90, 312 |
| GluI | GCNGC | 1 cut(s) | 353 |
| HaeIII | GGCC | 1 cut(s) | 71 |
| HindIII | AAGCTT | 1 cut(s) | 149 |
| HinfI | GANTC | 1 cut(s) | 19 |
| HphI | GGTGA | 1 cut(s) | 198 |
| Hpy188I | TCNGA | 2 cut(s) | 244, 303 |
| Hpy188III | TCNNGA | 2 cut(s) | 261, 368 |
| HpyAV | CCTTC | 2 cut(s) | 28, 287 |
| HpyCH4IV | ACGT | 3 cut(s) | 121, 360, 364 |
| HpyCH4V | TGCA | 3 cut(s) | 111, 253, 321 |
| HpySE526I | ACGT | 3 cut(s) | 121, 360, 364 |
| Kzo9I | GATC | 1 cut(s) | 303 |
| LmnI | GCTCC | 1 cut(s) | 43 |
| LpnPI | CCDG | 1 cut(s) | 8 |
| LweI | GCATC | 1 cut(s) | 308 |
| MaeI | CTAG | 3 cut(s) | 47, 90, 312 |
| MaeII | ACGT | 3 cut(s) | 121, 360, 364 |
| MaeIII | GTNAC | 1 cut(s) | 204 |
| MalI | GATC | 1 cut(s) | 305 |
| MbiI | CCGCTC | 1 cut(s) | 79 |
| MboI | GATC | 1 cut(s) | 303 |
| MboII | GAAGA | 3 cut(s) | 17, 327, 336 |
| MlsI | TGGCCA | 1 cut(s) | 71 |
| MluCI | AATT | 1 cut(s) | 266 |
| MluNI | TGGCCA | 1 cut(s) | 71 |
| MnlI | CCTC | 8 cut(s) | 34, 51, 58, 159, 226, 238, 290, 350 |
| Mox20I | TGGCCA | 1 cut(s) | 71 |
| MscI | TGGCCA | 1 cut(s) | 71 |
| MseI | TTAA | 2 cut(s) | 15, 153 |
| Msp20I | TGGCCA | 1 cut(s) | 71 |
| MspCI | CTTAAG | 1 cut(s) | 152 |
| Mva1269I | GAATGC | 1 cut(s) | 111 |
| NdeII | GATC | 1 cut(s) | 303 |
| NheI | GCTAGC | 1 cut(s) | 89 |
| NmuCI | GTSAC | 1 cut(s) | 204 |
| PaeR7I | CTCGAG | 1 cut(s) | 368 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 366 |
| PctI | GAATGC | 1 cut(s) | 111 |
| PfeI | GAWTC | 1 cut(s) | 19 |
| Pfl23II | CGTACG | 2 cut(s) | 122, 361 |
| PkrI | GCNGC | 1 cut(s) | 354 |
| Ppu21I | YACGTR | 1 cut(s) | 122 |
| PspLI | CGTACG | 2 cut(s) | 122, 361 |
| RsaI | GTAC | 3 cut(s) | 124, 175, 363 |
| RsaNI | GTAC | 3 cut(s) | 123, 174, 362 |
| SaqAI | TTAA | 2 cut(s) | 15, 153 |
| SatI | GCNGC | 1 cut(s) | 353 |
| Sau3AI | GATC | 1 cut(s) | 303 |
| SfaNI | GCATC | 1 cut(s) | 308 |
| Sfr274I | CTCGAG | 1 cut(s) | 368 |
| SlaI | CTCGAG | 1 cut(s) | 368 |
| SmlI | CTYRAG | 2 cut(s) | 152, 368 |
| SmoI | CTYRAG | 2 cut(s) | 152, 368 |
| SnaBI | TACGTA | 1 cut(s) | 122 |
| Sse9I | AATT | 1 cut(s) | 266 |
| SsiI | CCGC | 2 cut(s) | 79, 352 |
| SspMI | CTAG | 3 cut(s) | 47, 90, 312 |
| TaiI | ACGT | 3 cut(s) | 124, 363, 367 |
| TaqI | TCGA | 1 cut(s) | 369 |
| TasI | AATT | 1 cut(s) | 266 |
| TauI | GCSGC | 1 cut(s) | 355 |
| TfiI | GAWTC | 1 cut(s) | 19 |
| Tru1I | TTAA | 2 cut(s) | 15, 153 |
| Tru9I | TTAA | 2 cut(s) | 15, 153 |
| TscAI | CASTG | 1 cut(s) | 106 |
| TseFI | GTSAC | 1 cut(s) | 204 |
| Tsp45I | GTSAC | 1 cut(s) | 204 |
| TspDTI | ATGAA | 3 cut(s) | 104, 302, 306 |
| TspRI | CASTG | 1 cut(s) | 106 |
| Vha464I | CTTAAG | 1 cut(s) | 152 |
| XhoI | CTCGAG | 1 cut(s) | 368 |
| XspI | CTAG | 3 cut(s) | 47, 90, 312 |