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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 7, 18 |
| AciI | CCGC | 6 cut(s) | 7, 18, 112, 144, 271, 323 |
| AcoI | YGGCCR | 1 cut(s) | 310 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 116, 121, 308, 319 |
| AgsI | TTSAA | 1 cut(s) | 247 |
| AluBI | AGCT | 2 cut(s) | 62, 377 |
| AluI | AGCT | 2 cut(s) | 62, 377 |
| AoxI | GGCC | 2 cut(s) | 118, 310 |
| ApaI | GGGCCC | 1 cut(s) | 122 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 105 |
| AspLEI | GCGC | 2 cut(s) | 7, 83 |
| AspS9I | GGNCC | 4 cut(s) | 118, 119, 217, 315 |
| AsuC2I | CCSGG | 3 cut(s) | 116, 122, 275 |
| AsuHPI | GGTGA | 2 cut(s) | 65, 182 |
| AvaII | GGWCC | 2 cut(s) | 217, 315 |
| BaeGI | GKGCMC | 1 cut(s) | 122 |
| BanII | GRGCYC | 1 cut(s) | 122 |
| BauI | CACGAG | 2 cut(s) | 66, 87 |
| BccI | CCATC | 1 cut(s) | 347 |
| BcnI | CCSGG | 3 cut(s) | 116, 122, 275 |
| BfaI | CTAG | 1 cut(s) | 159 |
| BfoI | RGCGCY | 1 cut(s) | 84 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 126 |
| BisI | GCNGC | 2 cut(s) | 145, 271 |
| BlsI | GCNGC | 2 cut(s) | 146, 272 |
| Bme1390I | CCNGG | 3 cut(s) | 116, 122, 275 |
| Bme18I | GGWCC | 2 cut(s) | 217, 315 |
| BmgT120I | GGNCC | 4 cut(s) | 118, 119, 217, 315 |
| BmiI | GGNNCC | 4 cut(s) | 119, 120, 218, 219 |
| BmrFI | CCNGG | 3 cut(s) | 116, 122, 275 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 26, 58, 28, 60 |
| BpmI | CTGGAG | 1 cut(s) | 156 |
| BpuMI | CCSGG | 3 cut(s) | 116, 122, 275 |
| BsaJI | CCNNGG | 4 cut(s) | 115, 274, 288, 318 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 116, 121, 308, 319 |
| Bse118I | RCCGGY | 1 cut(s) | 312 |
| BseDI | CCNNGG | 4 cut(s) | 115, 274, 288, 318 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 116, 121, 308, 319 |
| BseRI | GAGGAG | 2 cut(s) | 153, 177 |
| BseSI | GKGCMC | 1 cut(s) | 122 |
| BseX3I | CGGCCG | 1 cut(s) | 310 |
| Bsh1236I | CGCG | 2 cut(s) | 7, 18 |
| Bsh1285I | CGRYCG | 2 cut(s) | 22, 313 |
| BshFI | GGCC | 2 cut(s) | 120, 312 |
| BsiEI | CGRYCG | 2 cut(s) | 22, 313 |
| BsiSI | CCGG | 4 cut(s) | 115, 122, 274, 313 |
| BslFI | GGGAC | 1 cut(s) | 203 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 116, 121, 308, 319 |
| BsmFI | GGGAC | 1 cut(s) | 203 |
| BsnI | GGCC | 2 cut(s) | 120, 312 |
| Bsp120I | GGGCCC | 1 cut(s) | 118 |
| Bsp1286I | GDGCHC | 1 cut(s) | 122 |
| Bsp143I | GATC | 1 cut(s) | 306 |
| BspACI | CCGC | 6 cut(s) | 7, 18, 112, 144, 271, 323 |
| BspANI | GGCC | 2 cut(s) | 120, 312 |
| BspFNI | CGCG | 2 cut(s) | 7, 18 |
| BspLI | GGNNCC | 4 cut(s) | 119, 120, 218, 219 |
| BsrFI | RCCGGY | 1 cut(s) | 312 |
| BssAI | RCCGGY | 1 cut(s) | 312 |
| BssECI | CCNNGG | 4 cut(s) | 115, 274, 288, 318 |
| BssMI | GATC | 1 cut(s) | 306 |
| BssSI | CACGAG | 2 cut(s) | 66, 87 |
| BssT1I | CCWWGG | 1 cut(s) | 288 |
| Bst2BI | CACGAG | 2 cut(s) | 66, 87 |
| BstC8I | GCNNGC | 1 cut(s) | 210 |
| BstDEI | CTNAG | 1 cut(s) | 378 |
| BstFNI | CGCG | 2 cut(s) | 7, 18 |
| BstH2I | RGCGCY | 1 cut(s) | 84 |
| BstHHI | GCGC | 2 cut(s) | 7, 83 |
| BstKTI | GATC | 1 cut(s) | 309 |
| BstMBI | GATC | 1 cut(s) | 306 |
| BstMCI | CGRYCG | 2 cut(s) | 22, 313 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 126, 329, 374 |
| BstSCI | CCNGG | 3 cut(s) | 114, 120, 273 |
| BstSLI | GKGCMC | 1 cut(s) | 122 |
| BstUI | CGCG | 2 cut(s) | 7, 18 |
| BstZI | CGGCCG | 1 cut(s) | 310 |
| BsuRI | GGCC | 2 cut(s) | 120, 312 |
| Cac8I | GCNNGC | 1 cut(s) | 210 |
| CfoI | GCGC | 2 cut(s) | 7, 83 |
| Cfr10I | RCCGGY | 1 cut(s) | 312 |
| Cfr13I | GGNCC | 4 cut(s) | 118, 119, 217, 315 |
| CpoI | CGGWCCG | 1 cut(s) | 315 |
| CspI | CGGWCCG | 1 cut(s) | 315 |
| CviJI | RGCY | 4 cut(s) | 62, 120, 312, 377 |
| CviKI_1 | RGCY | 4 cut(s) | 62, 120, 312, 377 |
| DdeI | CTNAG | 1 cut(s) | 378 |
| DpnI | GATC | 1 cut(s) | 308 |
| DpnII | GATC | 1 cut(s) | 306 |
| EaeI | YGGCCR | 1 cut(s) | 310 |
| EagI | CGGCCG | 1 cut(s) | 310 |
| EclXI | CGGCCG | 1 cut(s) | 310 |
| Eco130I | CCWWGG | 1 cut(s) | 288 |
| Eco24I | GRGCYC | 1 cut(s) | 122 |
| Eco47I | GGWCC | 2 cut(s) | 217, 315 |
| Eco52I | CGGCCG | 1 cut(s) | 310 |
| EcoO109I | RGGNCCY | 2 cut(s) | 118, 217 |
| EcoT14I | CCWWGG | 1 cut(s) | 288 |
| EcoT38I | GRGCYC | 1 cut(s) | 122 |
| ErhI | CCWWGG | 1 cut(s) | 288 |
| FaiI | YATR | 4 cut(s) | 48, 226, 298, 371 |
| FaqI | GGGAC | 1 cut(s) | 203 |
| FauI | CCCGC | 1 cut(s) | 119 |
| Fnu4HI | GCNGC | 2 cut(s) | 145, 271 |
| FriOI | GRGCYC | 1 cut(s) | 122 |
| Fsp4HI | GCNGC | 2 cut(s) | 145, 271 |
| FspBI | CTAG | 1 cut(s) | 159 |
| GlaI | GCGC | 2 cut(s) | 6, 82 |
| GluI | GCNGC | 2 cut(s) | 145, 271 |
| GsuI | CTGGAG | 1 cut(s) | 156 |
| HaeII | RGCGCY | 1 cut(s) | 84 |
| HaeIII | GGCC | 2 cut(s) | 120, 312 |
| HapII | CCGG | 4 cut(s) | 115, 122, 274, 313 |
| HhaI | GCGC | 2 cut(s) | 7, 83 |
| Hin6I | GCGC | 2 cut(s) | 5, 81 |
| HinP1I | GCGC | 2 cut(s) | 5, 81 |
| HindIII | AAGCTT | 1 cut(s) | 375 |
| HinfI | GANTC | 3 cut(s) | 13, 131, 258 |
| HpaII | CCGG | 4 cut(s) | 115, 122, 274, 313 |
| HphI | GGTGA | 2 cut(s) | 65, 182 |
| Hpy188I | TCNGA | 2 cut(s) | 195, 319 |
| Hpy188III | TCNNGA | 2 cut(s) | 135, 159 |
| HpyAV | CCTTC | 2 cut(s) | 50, 95 |
| HpyCH4IV | ACGT | 1 cut(s) | 233 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 126, 329, 374 |
| HpyF3I | CTNAG | 1 cut(s) | 378 |
| HpySE526I | ACGT | 1 cut(s) | 233 |
| HspAI | GCGC | 2 cut(s) | 5, 81 |
| KflI | GGGWCCC | 1 cut(s) | 217 |
| Kzo9I | GATC | 1 cut(s) | 306 |
| LmnI | GCTCC | 2 cut(s) | 59, 290 |
| LpnPI | CCDG | 5 cut(s) | 120, 128, 135, 287, 326 |
| MaeI | CTAG | 1 cut(s) | 159 |
| MaeII | ACGT | 1 cut(s) | 233 |
| MalI | GATC | 1 cut(s) | 308 |
| MboI | GATC | 1 cut(s) | 306 |
| MhlI | GDGCHC | 1 cut(s) | 122 |
| MmeI | TCCRAC | 1 cut(s) | 233 |
| MroXI | GAANNNNTTC | 1 cut(s) | 105 |
| MslI | CAYNNNNRTG | 1 cut(s) | 51 |
| MspI | CCGG | 4 cut(s) | 115, 122, 274, 313 |
| MspR9I | CCNGG | 3 cut(s) | 116, 122, 275 |
| MvnI | CGCG | 2 cut(s) | 7, 18 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 126, 329, 374 |
| NciI | CCSGG | 3 cut(s) | 116, 122, 275 |
| NdeII | GATC | 1 cut(s) | 306 |
| NlaIV | GGNNCC | 4 cut(s) | 119, 120, 218, 219 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 28, 315, 336 |
| PdmI | GAANNNNTTC | 1 cut(s) | 105 |
| PfeI | GAWTC | 3 cut(s) | 13, 131, 258 |
| PkrI | GCNGC | 2 cut(s) | 146, 272 |
| PpuMI | RGGWCCY | 1 cut(s) | 217 |
| Psp5II | RGGWCCY | 1 cut(s) | 217 |
| PspN4I | GGNNCC | 4 cut(s) | 119, 120, 218, 219 |
| PspOMI | GGGCCC | 1 cut(s) | 118 |
| PspPI | GGNCC | 4 cut(s) | 118, 119, 217, 315 |
| PspPPI | RGGWCCY | 1 cut(s) | 217 |
| RseI | CAYNNNNRTG | 1 cut(s) | 51 |
| Rsr2I | CGGWCCG | 1 cut(s) | 315 |
| RsrII | CGGWCCG | 1 cut(s) | 315 |
| SatI | GCNGC | 2 cut(s) | 145, 271 |
| Sau3AI | GATC | 1 cut(s) | 306 |
| Sau96I | GGNCC | 4 cut(s) | 118, 119, 217, 315 |
| ScrFI | CCNGG | 3 cut(s) | 116, 122, 275 |
| SduI | GDGCHC | 1 cut(s) | 122 |
| SetI | ASST | 8 cut(s) | 28, 55, 64, 97, 106, 169, 236, 379 |
| SinI | GGWCC | 2 cut(s) | 217, 315 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 51 |
| SsiI | CCGC | 6 cut(s) | 7, 18, 112, 144, 271, 323 |
| SspMI | CTAG | 1 cut(s) | 159 |
| StyD4I | CCNGG | 3 cut(s) | 114, 120, 273 |
| StyI | CCWWGG | 1 cut(s) | 288 |
| TaiI | ACGT | 1 cut(s) | 236 |
| TaqI | TCGA | 1 cut(s) | 22 |
| TauI | GCSGC | 2 cut(s) | 147, 273 |
| TfiI | GAWTC | 3 cut(s) | 13, 131, 258 |
| TspDTI | ATGAA | 1 cut(s) | 168 |
| VpaK11BI | GGWCC | 2 cut(s) | 217, 315 |
| XbaI | TCTAGA | 1 cut(s) | 158 |
| XmnI | GAANNNNTTC | 1 cut(s) | 105 |
| XspI | CTAG | 1 cut(s) | 159 |