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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 130 |
| AccII | CGCG | 3 cut(s) | 326, 384, 429 |
| AciI | CCGC | 6 cut(s) | 196, 302, 324, 382, 396, 427 |
| AclWI | GGATC | 1 cut(s) | 373 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 72, 73, 402 |
| AflIII | ACRYGT | 2 cut(s) | 256, 529 |
| AgsI | TTSAA | 3 cut(s) | 127, 233, 335 |
| AjnI | CCWGG | 1 cut(s) | 149 |
| AluBI | AGCT | 3 cut(s) | 103, 268, 515 |
| AluI | AGCT | 3 cut(s) | 103, 268, 515 |
| Alw21I | GWGCWC | 1 cut(s) | 19 |
| Alw26I | GTCTC | 4 cut(s) | 39, 71, 245, 538 |
| AlwI | GGATC | 1 cut(s) | 373 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 150, 518 |
| Ama87I | CYCGRG | 1 cut(s) | 201 |
| AoxI | GGCC | 5 cut(s) | 48, 111, 147, 276, 366 |
| ApeKI | GCWGC | 3 cut(s) | 103, 449, 470 |
| AspLEI | GCGC | 2 cut(s) | 328, 491 |
| AspS9I | GGNCC | 6 cut(s) | 88, 111, 147, 321, 366, 424 |
| AvaI | CYCGRG | 1 cut(s) | 201 |
| AvaII | GGWCC | 3 cut(s) | 88, 321, 424 |
| Bbv12I | GWGCWC | 1 cut(s) | 19 |
| BbvCI | CCTCAGC | 1 cut(s) | 71 |
| BbvI | GCAGC | 3 cut(s) | 90, 457, 461 |
| BccI | CCATC | 5 cut(s) | 281, 356, 380, 415, 450 |
| BciT130I | CCWGG | 1 cut(s) | 151 |
| BclI | TGATCA | 1 cut(s) | 501 |
| BcoDI | GTCTC | 4 cut(s) | 39, 71, 245, 538 |
| BfaI | CTAG | 2 cut(s) | 207, 541 |
| BfmI | CTRYAG | 1 cut(s) | 104 |
| BfoI | RGCGCY | 1 cut(s) | 492 |
| BfuAI | ACCTGC | 1 cut(s) | 130 |
| BisI | GCNGC | 4 cut(s) | 104, 396, 450, 471 |
| BlsI | GCNGC | 4 cut(s) | 105, 397, 451, 472 |
| Bme1390I | CCNGG | 1 cut(s) | 151 |
| Bme18I | GGWCC | 3 cut(s) | 88, 321, 424 |
| BmeT110I | CYCGRG | 1 cut(s) | 201 |
| BmgT120I | GGNCC | 6 cut(s) | 88, 111, 147, 321, 366, 424 |
| BmiI | GGNNCC | 1 cut(s) | 367 |
| BmrFI | CCNGG | 1 cut(s) | 151 |
| BmsI | GCATC | 1 cut(s) | 181 |
| Bpu10I | CCTNAGC | 1 cut(s) | 71 |
| BpuEI | CTTGAG | 1 cut(s) | 254 |
| BsaAI | YACGTR | 1 cut(s) | 239 |
| BsaBI | GATNNNNATC | 2 cut(s) | 312, 500 |
| BsaJI | CCNNGG | 2 cut(s) | 114, 150 |
| BsaWI | WCCGGW | 1 cut(s) | 318 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 72, 73, 402 |
| Bse118I | RCCGGY | 1 cut(s) | 95 |
| Bse8I | GATNNNNATC | 2 cut(s) | 312, 500 |
| BseBI | CCWGG | 1 cut(s) | 151 |
| BseDI | CCNNGG | 2 cut(s) | 114, 150 |
| BseJI | GATNNNNATC | 2 cut(s) | 312, 500 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 72, 73, 402 |
| BseMII | CTCAG | 2 cut(s) | 62, 372 |
| BseRI | GAGGAG | 1 cut(s) | 44 |
| BseXI | GCAGC | 3 cut(s) | 90, 457, 461 |
| BseYI | CCCAGC | 1 cut(s) | 491 |
| Bsh1236I | CGCG | 3 cut(s) | 326, 384, 429 |
| BshFI | GGCC | 5 cut(s) | 50, 113, 149, 278, 368 |
| BsiHKAI | GWGCWC | 1 cut(s) | 19 |
| BsiHKCI | CYCGRG | 1 cut(s) | 201 |
| BsiSI | CCGG | 2 cut(s) | 96, 319 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 72, 73, 402 |
| BsmAI | GTCTC | 4 cut(s) | 39, 71, 245, 538 |
| BsnI | GGCC | 5 cut(s) | 50, 113, 149, 278, 368 |
| BsoBI | CYCGRG | 1 cut(s) | 201 |
| Bsp1286I | GDGCHC | 1 cut(s) | 19 |
| Bsp143I | GATC | 2 cut(s) | 378, 501 |
| BspACI | CCGC | 6 cut(s) | 196, 302, 324, 382, 396, 427 |
| BspANI | GGCC | 5 cut(s) | 50, 113, 149, 278, 368 |
| BspCNI | CTCAG | 2 cut(s) | 63, 371 |
| BspFNI | CGCG | 3 cut(s) | 326, 384, 429 |
| BspLI | GGNNCC | 1 cut(s) | 367 |
| BspMAI | CTGCAG | 1 cut(s) | 108 |
| BspMI | ACCTGC | 1 cut(s) | 130 |
| BspPI | GGATC | 1 cut(s) | 373 |
| BsrFI | RCCGGY | 1 cut(s) | 95 |
| BssAI | RCCGGY | 1 cut(s) | 95 |
| BssECI | CCNNGG | 2 cut(s) | 114, 150 |
| BssMI | GATC | 2 cut(s) | 378, 501 |
| Bst2UI | CCWGG | 1 cut(s) | 151 |
| BstBAI | YACGTR | 1 cut(s) | 239 |
| BstC8I | GCNNGC | 5 cut(s) | 15, 101, 194, 400, 438 |
| BstDEI | CTNAG | 2 cut(s) | 71, 358 |
| BstFNI | CGCG | 3 cut(s) | 326, 384, 429 |
| BstH2I | RGCGCY | 1 cut(s) | 492 |
| BstHHI | GCGC | 2 cut(s) | 328, 491 |
| BstKTI | GATC | 2 cut(s) | 381, 504 |
| BstMAI | GTCTC | 4 cut(s) | 39, 71, 245, 538 |
| BstMBI | GATC | 2 cut(s) | 378, 501 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 446 |
| BstNI | CCWGG | 1 cut(s) | 151 |
| BstNSI | RCATGY | 2 cut(s) | 260, 533 |
| BstSCI | CCNGG | 1 cut(s) | 149 |
| BstSFI | CTRYAG | 1 cut(s) | 104 |
| BstUI | CGCG | 3 cut(s) | 326, 384, 429 |
| BstV1I | GCAGC | 3 cut(s) | 90, 457, 461 |
| BsuRI | GGCC | 5 cut(s) | 50, 113, 149, 278, 368 |
| BtgZI | GCGATG | 1 cut(s) | 399 |
| BtsI | GCAGTG | 2 cut(s) | 30, 243 |
| BtsIMutI | CAGTG | 2 cut(s) | 30, 243 |
| BveI | ACCTGC | 1 cut(s) | 130 |
| Cac8I | GCNNGC | 5 cut(s) | 15, 101, 194, 400, 438 |
| CaiI | CAGNNNCTG | 2 cut(s) | 150, 518 |
| CfoI | GCGC | 2 cut(s) | 328, 491 |
| Cfr10I | RCCGGY | 1 cut(s) | 95 |
| Cfr13I | GGNCC | 6 cut(s) | 88, 111, 147, 321, 366, 424 |
| CpoI | CGGWCCG | 1 cut(s) | 321 |
| CspI | CGGWCCG | 1 cut(s) | 321 |
| CviAII | CATG | 2 cut(s) | 257, 530 |
| DdeI | CTNAG | 2 cut(s) | 71, 358 |
| DpnI | GATC | 2 cut(s) | 380, 503 |
| DpnII | GATC | 2 cut(s) | 378, 501 |
| Eco47I | GGWCC | 3 cut(s) | 88, 321, 424 |
| Eco88I | CYCGRG | 1 cut(s) | 201 |
| EcoO109I | RGGNCCY | 2 cut(s) | 147, 366 |
| EcoRII | CCWGG | 1 cut(s) | 149 |
| FaeI | CATG | 2 cut(s) | 260, 533 |
| FaiI | YATR | 3 cut(s) | 258, 434, 531 |
| FatI | CATG | 2 cut(s) | 256, 529 |
| FbaI | TGATCA | 1 cut(s) | 501 |
| Fnu4HI | GCNGC | 4 cut(s) | 104, 396, 450, 471 |
| Fsp4HI | GCNGC | 4 cut(s) | 104, 396, 450, 471 |
| FspBI | CTAG | 2 cut(s) | 207, 541 |
| GlaI | GCGC | 2 cut(s) | 327, 490 |
| GluI | GCNGC | 4 cut(s) | 104, 396, 450, 471 |
| GsaI | CCCAGC | 1 cut(s) | 495 |
| HaeII | RGCGCY | 1 cut(s) | 492 |
| HaeIII | GGCC | 5 cut(s) | 50, 113, 149, 278, 368 |
| HapII | CCGG | 2 cut(s) | 96, 319 |
| HhaI | GCGC | 2 cut(s) | 328, 491 |
| Hin1II | CATG | 2 cut(s) | 260, 533 |
| Hin6I | GCGC | 2 cut(s) | 326, 489 |
| HinP1I | GCGC | 2 cut(s) | 326, 489 |
| HincII | GTYRAC | 1 cut(s) | 262 |
| HindII | GTYRAC | 1 cut(s) | 262 |
| HinfI | GANTC | 2 cut(s) | 32, 199 |
| HpaII | CCGG | 2 cut(s) | 96, 319 |
| Hpy166II | GTNNAC | 2 cut(s) | 262, 295 |
| Hpy188I | TCNGA | 1 cut(s) | 361 |
| Hpy188III | TCNNGA | 5 cut(s) | 44, 86, 271, 335, 413 |
| Hpy8I | GTNNAC | 2 cut(s) | 262, 295 |
| HpyAV | CCTTC | 5 cut(s) | 121, 239, 268, 364, 439 |
| HpyCH4IV | ACGT | 1 cut(s) | 238 |
| HpyCH4V | TGCA | 7 cut(s) | 23, 106, 178, 373, 436, 473, 521 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 446 |
| HpyF3I | CTNAG | 2 cut(s) | 71, 358 |
| HpySE526I | ACGT | 1 cut(s) | 238 |
| Hsp92II | CATG | 2 cut(s) | 260, 533 |
| HspAI | GCGC | 2 cut(s) | 326, 489 |
| Ksp22I | TGATCA | 1 cut(s) | 501 |
| Kzo9I | GATC | 2 cut(s) | 378, 501 |
| LmnI | GCTCC | 2 cut(s) | 10, 136 |
| Lsp1109I | GCAGC | 3 cut(s) | 90, 457, 461 |
| LweI | GCATC | 1 cut(s) | 181 |
| MaeI | CTAG | 2 cut(s) | 207, 541 |
| MaeII | ACGT | 1 cut(s) | 238 |
| MaeIII | GTNAC | 1 cut(s) | 209 |
| MalI | GATC | 2 cut(s) | 380, 503 |
| MboI | GATC | 2 cut(s) | 378, 501 |
| MboII | GAAGA | 2 cut(s) | 430, 454 |
| MhlI | GDGCHC | 1 cut(s) | 19 |
| MlyI | GAGTC | 2 cut(s) | 41, 193 |
| MmeI | TCCRAC | 1 cut(s) | 165 |
| MnlI | CCTC | 6 cut(s) | 22, 40, 66, 102, 109, 154 |
| MspA1I | CMGCKG | 2 cut(s) | 196, 398 |
| MspI | CCGG | 2 cut(s) | 96, 319 |
| MspR9I | CCNGG | 1 cut(s) | 151 |
| MvaI | CCWGG | 1 cut(s) | 151 |
| MvnI | CGCG | 3 cut(s) | 326, 384, 429 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 446 |
| NdeII | GATC | 2 cut(s) | 378, 501 |
| NlaIII | CATG | 2 cut(s) | 260, 533 |
| NlaIV | GGNNCC | 1 cut(s) | 367 |
| NmeAIII | GCCGAG | 3 cut(s) | 76, 139, 274 |
| NmuCI | GTSAC | 1 cut(s) | 209 |
| NspI | RCATGY | 2 cut(s) | 260, 533 |
| PciI | ACATGT | 2 cut(s) | 256, 529 |
| PkrI | GCNGC | 4 cut(s) | 105, 397, 451, 472 |
| PleI | GAGTC | 2 cut(s) | 40, 193 |
| PpsI | GAGTC | 2 cut(s) | 40, 193 |
| Ppu21I | YACGTR | 1 cut(s) | 239 |
| PscI | ACATGT | 2 cut(s) | 256, 529 |
| Psp6I | CCWGG | 1 cut(s) | 149 |
| PspFI | CCCAGC | 1 cut(s) | 491 |
| PspGI | CCWGG | 1 cut(s) | 149 |
| PspN4I | GGNNCC | 1 cut(s) | 367 |
| PspPI | GGNCC | 6 cut(s) | 88, 111, 147, 321, 366, 424 |
| PstI | CTGCAG | 1 cut(s) | 108 |
| PstNI | CAGNNNCTG | 2 cut(s) | 150, 518 |
| Rsr2I | CGGWCCG | 1 cut(s) | 321 |
| RsrII | CGGWCCG | 1 cut(s) | 321 |
| SatI | GCNGC | 4 cut(s) | 104, 396, 450, 471 |
| Sau3AI | GATC | 2 cut(s) | 378, 501 |
| Sau96I | GGNCC | 6 cut(s) | 88, 111, 147, 321, 366, 424 |
| SchI | GAGTC | 2 cut(s) | 41, 193 |
| ScrFI | CCNGG | 1 cut(s) | 151 |
| SduI | GDGCHC | 1 cut(s) | 19 |
| SetI | ASST | 7 cut(s) | 93, 105, 120, 144, 241, 270, 517 |
| SfaNI | GCATC | 1 cut(s) | 181 |
| SfcI | CTRYAG | 1 cut(s) | 104 |
| SinI | GGWCC | 3 cut(s) | 88, 321, 424 |
| SmlI | CTYRAG | 1 cut(s) | 269 |
| SmoI | CTYRAG | 1 cut(s) | 269 |
| SsiI | CCGC | 6 cut(s) | 196, 302, 324, 382, 396, 427 |
| SspMI | CTAG | 2 cut(s) | 207, 541 |
| StyD4I | CCNGG | 1 cut(s) | 149 |
| TaiI | ACGT | 1 cut(s) | 241 |
| TaqI | TCGA | 1 cut(s) | 377 |
| TauI | GCSGC | 1 cut(s) | 398 |
| TscAI | CASTG | 2 cut(s) | 30, 250 |
| TseFI | GTSAC | 1 cut(s) | 209 |
| TseI | GCWGC | 3 cut(s) | 103, 449, 470 |
| Tsp45I | GTSAC | 1 cut(s) | 209 |
| TspDTI | ATGAA | 1 cut(s) | 359 |
| TspRI | CASTG | 2 cut(s) | 30, 250 |
| VpaK11BI | GGWCC | 3 cut(s) | 88, 321, 424 |
| XceI | RCATGY | 2 cut(s) | 260, 533 |
| XspI | CTAG | 2 cut(s) | 207, 541 |