Rroxscaffold_4G00308330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000075
Physical Location & Seq
Reverse (-)
29863479 .. 29866777
3299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00308330.1

Sequence Viewer

Length: 1326 bp
ATGCTCGTTGCTCGTAGAGGTGTATCTAAGGTTTCCGCATATCGTGTCTTGGAGTATCTCAACCGCCGAGCCGAGGAAGAAGCTGGTGTTGAGGGGCATGATGCTCGGGATGCTCGGGAACCGGCGCGATATCCCCGGGGGCCGCAATGTAGGGTGGATCTTTGTGACGTGGCTCGGGCCTCGGAGCCCACGGTTGAAGTGGAGATTTCCATTGAGGAGTTGTTGGAAGAAGTGGAGCGATGTCGGAGCGATACCGGTGCTTGTGCTCGGCCGGTGCAAGATGCGGTGTTGGAACGACTAGATGTCTTTGACCGTCGAAGCTCCCGAGGTGCAACCCGAGTCCGGAGAGGCGTGGTTGGGGTTGCCCACGTGACCAAGATGAGAACCCATGGCCGGGATGGTGAAGGGGATGGAATCCGAGTGTCCGACACGTGCGCCCGTACGGATGGGGTTGGGTCGAAGAAGAGGACCGCCTCGCAGCTGCGTCTCGGGAGTCCCCTAGTTGGTATCGGCATCGATACTAGCCGTAGCAAGAGGTCTCGGGTTGATAGTGTATCGGGCTCGAGATCTACGGGCGAGATTGGAATTACGGTGGTGCCATCCTTCATATGGTTGCTAACTCGCGGAATTGTCATTGTGACGGCGAGCCGCGTGAATGCCGAAGACCCTTCGCCGGGGTATCGGGAGGCTCGGGAGAGGTTGATGAGGCCCTACCGGGGGGAGTTGGATGCCGAGAGGGAGCAGCGCGCGAGCTTCGAGTGCGGTGGACCAAGTCCAGTGGAGTGCAAGGATATGAGGCGAGTAATTGATGAAGGGATTGCAAGGAGGATGGAGATGGAGCGATCACTTGCCATAGAGAAGAGGGAGGTGGATCGCTTGAGAGATGTTGAGCTTGAGGCAAGCGAGAGGGAGGCGAGATGGAGCGGCTCGGGGAAGGAGTTAGCGGAGCAACGAGGCTTGGGCCGCAACTTTGCCGAGGATTGCATTTGCTTGCGTGCCGCCGCCGAGACACATTTTGACAAGCTCCATAAGGCTAAGCGGGATAGCGCGGACAAGGCGGTGGATCTCTATCTCCGGTCATTAAGGAAAAGTGACGATTGGTTGTCCGGAGACGGTTGGTGGCGGTGGCATTCGCCTATAAATAGCGAGTGGCAAACTTTTGGCATTGAGAGATGGCATTTGGAGTGGCATCTCATCCGCGTTAGCCGTCATCGCCTTACATGTGAGGGGCCTATGGATGGCGATGTGCCTCGTGGTGAGAACTGTGATCGCTGTGATGTATTGGCCACCATTTATTCGGTTGCGTCATGGCGAAGTATTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

441

Amino Acids

49.75

Weight (kDa)

7.97

Isoelectric Point (pI)

55.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000075)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0348161 RchiOBHm_Chr1g0367481 RchiOBHm_Chr1g0368431 RchiOBHm_Chr2g0116021 RchiOBHm_Chr2g0133961 RchiOBHm_Chr4g0390151 RchiOBHm_Chr4g0402771 RchiOBHm_Chr4g0419581 RchiOBHm_Chr5g0054351 RchiOBHm_Chr6g0278891 RchiOBHm_Chr7g0201941 RchiOBHm_Chr7g0242761
rosa_laevigata RLG00000002487 RLG00000002488 RLG00000003412 RLG00000003415 RLG00000013607 RLG00000018981 RLG00000018982 RLG00000034520 RLG00000034521
rosa_multiflora Rmu_co8024510.1_g000001 Rmu_co8121892.1_g000001 Rmu_co8133046.1_g000001 Rmu_co8158032.1_g000001 Rmu_co8181114.1_g000001 Rmu_co8202532.1_g000001 Rmu_co8331471.1_g000001 Rmu_co8340209.1_g000001 Rmu_co8359899.1_g000001 Rmu_co8433657.1_g000002 Rmu_co8436419.1_g000002 Rmu_co8458211.1_g000002 Rmu_co8458731.1_g000002 Rmu_co8466361.1_g000001 Rmu_co8474565.1_g000001 Rmu_co8474565.1_g000002 Rmu_co8482201.1_g000001 Rmu_co8491967.1_g000003 Rmu_co8498095.1_g000001 Rmu_co8513217.1_g000002 Rmu_co8518257.1_g000001 Rmu_co8520425.1_g000003 Rmu_co8521283.1_g000003 Rmu_sc0000029.1_g000029 Rmu_sc0000082.1_g000019 Rmu_sc0000147.1_g000107 Rmu_sc0000212.1_g000005 Rmu_sc0000247.1_g000030 Rmu_sc0000367.1_g000175 Rmu_sc0000433.1_g000035 Rmu_sc0000538.1_g000038 Rmu_sc0000550.1_g000010 Rmu_sc0000635.1_g000007 Rmu_sc0000650.1_g000012 Rmu_sc0000652.1_g000009 Rmu_sc0000652.1_g000010 Rmu_sc0000742.1_g000010 Rmu_sc0000750.1_g000007 Rmu_sc0000750.1_g000008 Rmu_sc0000772.1_g000018 Rmu_sc0000830.1_g000026 Rmu_sc0000859.1_g000006 Rmu_sc0001190.1_g000039 Rmu_sc0001190.1_g000050 Rmu_sc0001190.1_g000051 Rmu_sc0001205.1_g000008 Rmu_sc0001294.1_g000025 Rmu_sc0001366.1_g000010 Rmu_sc0001373.1_g000036 Rmu_sc0001423.1_g000046 Rmu_sc0001788.1_g000014 Rmu_sc0001801.1_g000016 Rmu_sc0001849.1_g000032 Rmu_sc0001967.1_g000002 Rmu_sc0002082.1_g000066 Rmu_sc0002250.1_g000013 Rmu_sc0002322.1_g000039 Rmu_sc0002371.1_g000002 Rmu_sc0002522.1_g000036 Rmu_sc0002532.1_g000048 Rmu_sc0002669.1_g000065 Rmu_sc0002669.1_g000067 Rmu_sc0002669.1_g000069 Rmu_sc0002834.1_g000007 Rmu_sc0003226.1_g000070 Rmu_sc0003260.1_g000018 Rmu_sc0003313.1_g000007 Rmu_sc0003441.1_g000018 Rmu_sc0003490.1_g000008 Rmu_sc0003705.1_g000011 Rmu_sc0003737.1_g000013 Rmu_sc0003748.1_g000020 Rmu_sc0003910.1_g000015 Rmu_sc0003919.1_g000029 Rmu_sc0003919.1_g000031 Rmu_sc0004037.1_g000012 Rmu_sc0004099.1_g000003 Rmu_sc0004122.1_g000013 Rmu_sc0004402.1_g000013 Rmu_sc0004646.1_g000035 Rmu_sc0004688.1_g000024 Rmu_sc0004823.1_g000046 Rmu_sc0004869.1_g000003 Rmu_sc0004869.1_g000004 Rmu_sc0005132.1_g000035 Rmu_sc0005190.1_g000001 Rmu_sc0005229.1_g000005 Rmu_sc0005229.1_g000023 Rmu_sc0005363.1_g000034 Rmu_sc0005537.1_g000006 Rmu_sc0005657.1_g000024 Rmu_sc0005856.1_g000011 Rmu_sc0005856.1_g000012 Rmu_sc0005953.1_g000007 Rmu_sc0005971.1_g000015 Rmu_sc0006287.1_g000004 Rmu_sc0006315.1_g000014 Rmu_sc0006518.1_g000003 Rmu_sc0006695.1_g000066 Rmu_sc0006803.1_g000056 Rmu_sc0006822.1_g000002 Rmu_sc0006926.1_g000011 Rmu_sc0007560.1_g000008 Rmu_sc0007582.1_g000005 Rmu_sc0007618.1_g000025 Rmu_sc0007647.1_g000004 Rmu_sc0007656.1_g000013 Rmu_sc0007877.1_g000011 Rmu_sc0008528.1_g000005 Rmu_sc0008528.1_g000006 Rmu_sc0008749.1_g000004 Rmu_sc0008989.1_g000003 Rmu_sc0009120.1_g000010 Rmu_sc0009663.1_g000009 Rmu_sc0010035.1_g000001 Rmu_sc0010160.1_g000010 Rmu_sc0010160.1_g000011 Rmu_sc0010953.1_g000004 Rmu_sc0011008.1_g000006 Rmu_sc0011452.1_g000009 Rmu_sc0012746.1_g000014 Rmu_sc0013612.1_g000017 Rmu_sc0013951.1_g000011 Rmu_sc0014162.1_g000009 Rmu_sc0014162.1_g000010 Rmu_sc0016149.1_g000003 Rmu_sc0016418.1_g000008 Rmu_sc0016418.1_g000009 Rmu_sc0017353.1_g000001 Rmu_sc0017353.1_g000002 Rmu_sc0018537.1_g000012 Rmu_sc0019739.1_g000003 Rmu_sc0019739.1_g000004 Rmu_sc0020186.1_g000016 Rmu_sc0021611.1_g000001 Rmu_sc0022755.1_g000003 Rmu_sc0024226.1_g000006 Rmu_sc0025769.1_g000004 Rmu_sc0025769.1_g000005 Rmu_sc0030235.1_g000004 Rmu_sc0035508.1_g000007 Rmu_sc0036413.1_g000001 Rmu_sc0037646.1_g000001 Rmu_sc0037646.1_g000002 Rmu_sc0037647.1_g000001 Rmu_sc0037647.1_g000002 Rmu_sc0037678.1_g000001 Rmu_ssc0000072.1_g000010 Rmu_ssc0000116.1_g000041 Rmu_ssc0000127.1_g000018 Rmu_ssc0000175.1_g000018 Rmu_ssc0000175.1_g000019 Rmu_ssc0000175.1_g000020 Rmu_ssc0000197.1_g000037 Rmu_ssc0000213.1_g000051 Rmu_ssc0000359.1_g000008 Rmu_ssc0000392.1_g000019
rosa_roxburghii Rroxscaffold_154G00447930 Rroxscaffold_1G00000570 Rroxscaffold_1G00009890 Rroxscaffold_1G00012210 Rroxscaffold_1G00012960 Rroxscaffold_1G00014650 Rroxscaffold_1G00014660 Rroxscaffold_1G00014670 Rroxscaffold_1G00022880 Rroxscaffold_1G00024640 Rroxscaffold_1G00024650 Rroxscaffold_1G00025670 Rroxscaffold_1G00025680 Rroxscaffold_1G00025690 Rroxscaffold_1G00030660 Rroxscaffold_1G00031340 Rroxscaffold_1G00031350 Rroxscaffold_2G00103100 Rroxscaffold_2G00103120 Rroxscaffold_2G00107390 Rroxscaffold_2G00108940 Rroxscaffold_2G00110610 Rroxscaffold_2G00110620 Rroxscaffold_2G00110710 Rroxscaffold_2G00110720 Rroxscaffold_2G00110730 Rroxscaffold_2G00111170 Rroxscaffold_2G00111510 Rroxscaffold_2G00114750 Rroxscaffold_2G00114760 Rroxscaffold_2G00114770 Rroxscaffold_2G00116270 Rroxscaffold_2G00121090 Rroxscaffold_2G00129350 Rroxscaffold_2G00130410 Rroxscaffold_2G00155930 Rroxscaffold_3G00218120 Rroxscaffold_3G00218330 Rroxscaffold_3G00218340 Rroxscaffold_3G00227530 Rroxscaffold_3G00233140 Rroxscaffold_3G00236800 Rroxscaffold_3G00242370 Rroxscaffold_3G00242380 Rroxscaffold_3G00242410 Rroxscaffold_3G00248720 Rroxscaffold_3G00248730 Rroxscaffold_3G00248770 Rroxscaffold_3G00258550 Rroxscaffold_3G00258560 Rroxscaffold_4G00287000 Rroxscaffold_4G00289070 Rroxscaffold_4G00289080 Rroxscaffold_4G00289100 Rroxscaffold_4G00295600 Rroxscaffold_4G00298090 Rroxscaffold_4G00308330 Rroxscaffold_4G00310570 Rroxscaffold_4G00310580 Rroxscaffold_4G00310620 Rroxscaffold_4G00315750 Rroxscaffold_4G00319620 Rroxscaffold_4G00319630 Rroxscaffold_4G00328870 Rroxscaffold_4G00328880 Rroxscaffold_4G00332120 Rroxscaffold_4G00332310 Rroxscaffold_5G00332660 Rroxscaffold_5G00332710 Rroxscaffold_5G00332970 Rroxscaffold_5G00344920 Rroxscaffold_5G00345540 Rroxscaffold_5G00346760 Rroxscaffold_5G00346770 Rroxscaffold_5G00347420 Rroxscaffold_5G00350360 Rroxscaffold_5G00350370 Rroxscaffold_5G00354490 Rroxscaffold_5G00370760 Rroxscaffold_5G00370770 Rroxscaffold_5G00374010 Rroxscaffold_5G00374020 Rroxscaffold_5G00374490 Rroxscaffold_5G00374510 Rroxscaffold_5G00387640 Rroxscaffold_5G00387650 Rroxscaffold_6G00387870 Rroxscaffold_6G00388560 Rroxscaffold_6G00388570 Rroxscaffold_6G00388670 Rroxscaffold_6G00388680 Rroxscaffold_6G00391960 Rroxscaffold_6G00393010 Rroxscaffold_6G00395010 Rroxscaffold_6G00395020 Rroxscaffold_6G00397990 Rroxscaffold_6G00401460 Rroxscaffold_6G00407850 Rroxscaffold_6G00423090 Rroxscaffold_6G00423100 Rroxscaffold_6G00423110 Rroxscaffold_7G00165960 Rroxscaffold_7G00165970 Rroxscaffold_7G00176270 Rroxscaffold_7G00176280 Rroxscaffold_7G00176600 Rroxscaffold_7G00176610 Rroxscaffold_7G00176620 Rroxscaffold_7G00176660 Rroxscaffold_7G00195710
rosa_rugosa Rorug03G0209000 Rorug05G0468000 Rorug05G0468000
rosa_samantha Rh3AG250900 Rh3AG257700 Rh3BG294700 Rh3CG284700 Rh3CG284800 Rh3DG280200 Rh3DG280300 Rh3DG280500 Rh3DG287600 Rh3DG287700 Rh4BG408500 Rh4DG402700 Rh6CG194400 Rh6CG194600 Rh6DG186400 Rh6DG186500 Rh7AG218100 Rh7AG278800 Rh7BG224200 Rh7CG231300 Rh7CG231400 Rh7DG225400
rosa_wichuraiana Rw3G022640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 595
AccBSI CCGCTC 1 cut(s) 924
AccII CGCG 7 cut(s) 127, 624, 651, 747, 749, 1049, 1200
AccIII TCCGGA 2 cut(s) 342, 1106
AclWI GGATC 3 cut(s) 165, 879, 1071
AcoI YGGCCR 3 cut(s) 269, 391, 1284
AcvI CACGTG 2 cut(s) 370, 432
AfaI GTAC 1 cut(s) 442
AflIII ACRYGT 2 cut(s) 429, 1220
AgeI ACCGGT 1 cut(s) 254
AgsI TTSAA 1 cut(s) 197
AhdI GACNNNNNGTC 1 cut(s) 302
AjiI CACGTC 1 cut(s) 169
AluBI AGCT 6 cut(s) 83, 321, 481, 753, 892, 1024
AluI AGCT 6 cut(s) 83, 321, 481, 753, 892, 1024
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 4 cut(s) 491, 543, 1001, 1104
AlwI GGATC 3 cut(s) 165, 879, 1071
Aor13HI TCCGGA 2 cut(s) 342, 1106
AoxI GGCC 8 cut(s) 140, 177, 269, 391, 707, 961, 1229, 1284
ApeKI GCWGC 3 cut(s) 478, 481, 742
AsiGI ACCGGT 1 cut(s) 254
AspLEI GCGC 5 cut(s) 127, 437, 747, 749, 1049
AspS9I GGNCC 7 cut(s) 140, 177, 468, 708, 767, 961, 1229
AsuC2I CCSGG 5 cut(s) 136, 137, 395, 675, 716
AsuHPI GGTGA 2 cut(s) 413, 1268
AvaII GGWCC 2 cut(s) 468, 767
BalI TGGCCA 1 cut(s) 1286
BanI GGYRCC 1 cut(s) 595
BanII GRGCYC 2 cut(s) 189, 563
BauI CACGAG 1 cut(s) 1251
BbrPI CACGTG 2 cut(s) 370, 432
BbsI GAAGAC 1 cut(s) 669
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 3 cut(s) 468, 490, 754
BccI CCATC 9 cut(s) 392, 404, 440, 607, 823, 829, 912, 1167, 1232
BceAI ACGGC 3 cut(s) 510, 657, 1191
BcgI CGANNNNNNTGC 4 cut(s) 86, 120, 239, 273
BcnI CCSGG 5 cut(s) 136, 137, 395, 675, 716
BcoDI GTCTC 4 cut(s) 491, 543, 1001, 1104
BfaI CTAG 3 cut(s) 299, 500, 522
BglII AGATCT 1 cut(s) 566
BisI GCNGC 9 cut(s) 143, 479, 482, 649, 743, 925, 964, 999, 1002
BlpI GCTNAGC 1 cut(s) 1035
BlsI GCNGC 9 cut(s) 144, 480, 483, 650, 744, 926, 965, 1000, 1003
Bme1390I CCNGG 5 cut(s) 136, 137, 395, 675, 716
Bme18I GGWCC 2 cut(s) 468, 767
BmeRI GACNNNNNGTC 1 cut(s) 302
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 7 cut(s) 140, 177, 468, 708, 767, 961, 1229
BmiI GGNNCC 5 cut(s) 120, 141, 186, 597, 1230
BmrFI CCNGG 5 cut(s) 136, 137, 395, 675, 716
BmsI GCATC 6 cut(s) 91, 100, 271, 522, 718, 1198
BpiI GAAGAC 1 cut(s) 669
Bpu1102I GCTNAGC 1 cut(s) 1035
BpuEI CTTGAG 2 cut(s) 898, 914
BpuMI CCSGG 5 cut(s) 136, 137, 395, 675, 716
Bsa29I ATCGAT 1 cut(s) 516
BsaAI YACGTR 2 cut(s) 370, 432
BsaBI GATNNNNATC 1 cut(s) 1068
BsaI GGTCTC 1 cut(s) 543
BsaWI WCCGGW 4 cut(s) 254, 342, 1074, 1106
Bse118I RCCGGY 3 cut(s) 121, 254, 271
Bse1I ACTGG 1 cut(s) 776
Bse3DI GCAATG 1 cut(s) 152
Bse8I GATNNNNATC 1 cut(s) 1068
BseAI TCCGGA 2 cut(s) 342, 1106
BseCI ATCGAT 1 cut(s) 516
BseGI GGATG 9 cut(s) 115, 403, 415, 451, 599, 733, 834, 1194, 1243
BseJI GATNNNNATC 1 cut(s) 1068
BseMI GCAATG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 776
BsePI GCGCGC 1 cut(s) 745
BseRI GAGGAG 1 cut(s) 230
BseX3I CGGCCG 1 cut(s) 269
BseXI GCAGC 3 cut(s) 468, 490, 754
Bsh1236I CGCG 7 cut(s) 127, 624, 651, 747, 749, 1049, 1200
Bsh1285I CGRYCG 1 cut(s) 272
BshFI GGCC 8 cut(s) 142, 179, 271, 393, 709, 963, 1231, 1286
BshNI GGYRCC 1 cut(s) 595
BshTI ACCGGT 1 cut(s) 254
BshVI ATCGAT 1 cut(s) 516
BsiEI CGRYCG 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 268
BsiWI CGTACG 1 cut(s) 440
BslFI GGGAC 1 cut(s) 480
BsmAI GTCTC 4 cut(s) 491, 543, 1001, 1104
BsmBI CGTCTC 2 cut(s) 491, 1104
BsmFI GGGAC 1 cut(s) 480
BsmI GAATGC 2 cut(s) 661, 1129
BsnI GGCC 8 cut(s) 142, 179, 271, 393, 709, 963, 1231, 1286
Bso31I GGTCTC 1 cut(s) 543
Bsp1286I GDGCHC 3 cut(s) 189, 268, 563
Bsp13I TCCGGA 2 cut(s) 342, 1106
Bsp143I GATC 6 cut(s) 157, 566, 842, 871, 1063, 1267
Bsp1720I GCTNAGC 1 cut(s) 1035
Bsp19I CCATGG 1 cut(s) 388
BspANI GGCC 8 cut(s) 142, 179, 271, 393, 709, 963, 1231, 1286
BspDI ATCGAT 1 cut(s) 516
BspEI TCCGGA 2 cut(s) 342, 1106
BspFNI CGCG 7 cut(s) 127, 624, 651, 747, 749, 1049, 1200
BspLI GGNNCC 5 cut(s) 120, 141, 186, 597, 1230
BspPI GGATC 3 cut(s) 165, 879, 1071
BspT107I GGYRCC 1 cut(s) 595
BspTNI GGTCTC 1 cut(s) 543
BsrBI CCGCTC 1 cut(s) 924
BsrDI GCAATG 1 cut(s) 152
BsrFI RCCGGY 3 cut(s) 121, 254, 271
BsrI ACTGG 1 cut(s) 776
BssAI RCCGGY 3 cut(s) 121, 254, 271
BssHII GCGCGC 1 cut(s) 745
BssMI GATC 6 cut(s) 157, 566, 842, 871, 1063, 1267
BssSI CACGAG 1 cut(s) 1251
BssT1I CCWWGG 1 cut(s) 388
Bst2BI CACGAG 1 cut(s) 1251
Bst4CI ACNGT 5 cut(s) 193, 314, 592, 1115, 1265
Bst6I CTCTTC 2 cut(s) 458, 854
BstBAI YACGTR 2 cut(s) 370, 432
BstC8I GCNNGC 6 cut(s) 646, 747, 751, 901, 992, 996
BstDEI CTNAG 2 cut(s) 27, 1035
BstDSI CCRYGG 2 cut(s) 189, 388
BstF5I GGATG 9 cut(s) 115, 403, 415, 451, 599, 733, 834, 1194, 1243
BstFNI CGCG 7 cut(s) 127, 624, 651, 747, 749, 1049, 1200
BstHHI GCGC 5 cut(s) 127, 437, 747, 749, 1049
BstKTI GATC 6 cut(s) 160, 569, 845, 874, 1066, 1270
BstMAI GTCTC 4 cut(s) 491, 543, 1001, 1104
BstMBI GATC 6 cut(s) 157, 566, 842, 871, 1063, 1267
BstMCI CGRYCG 1 cut(s) 272
BstMWI GCNNNNNNNGC 5 cut(s) 110, 759, 963, 1055, 1212
BstNSI RCATGY 1 cut(s) 1224
BstSCI CCNGG 5 cut(s) 134, 135, 393, 673, 714
BstUI CGCG 7 cut(s) 127, 624, 651, 747, 749, 1049, 1200
BstV1I GCAGC 3 cut(s) 468, 490, 754
BstV2I GAAGAC 1 cut(s) 669
BstX2I RGATCY 3 cut(s) 157, 566, 1063
BstYI RGATCY 3 cut(s) 157, 566, 1063
BstZI CGGCCG 1 cut(s) 269
Bsu15I ATCGAT 1 cut(s) 516
BsuRI GGCC 8 cut(s) 142, 179, 271, 393, 709, 963, 1231, 1286
BsuTUI ATCGAT 1 cut(s) 516
BtgI CCRYGG 2 cut(s) 189, 388
BtgZI GCGATG 3 cut(s) 253, 1196, 1257
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 9 cut(s) 115, 403, 415, 451, 599, 733, 834, 1194, 1243
BtsIMutI CAGTG 1 cut(s) 783
Cac8I GCNNGC 6 cut(s) 646, 747, 751, 901, 992, 996
CfoI GCGC 5 cut(s) 127, 437, 747, 749, 1049
Cfr10I RCCGGY 3 cut(s) 121, 254, 271
Cfr13I GGNCC 7 cut(s) 140, 177, 468, 708, 767, 961, 1229
Cfr9I CCCGGG 1 cut(s) 135
ClaI ATCGAT 1 cut(s) 516
CseI GACGC 2 cut(s) 473, 1293
Csp6I GTAC 1 cut(s) 441
CspAI ACCGGT 1 cut(s) 254
CspCI CAANNNNNGTGG 2 cut(s) 759, 794
CviAII CATG 4 cut(s) 98, 389, 1221, 1308
CviQI GTAC 1 cut(s) 441
DdeI CTNAG 2 cut(s) 27, 1035
DpnI GATC 6 cut(s) 159, 568, 844, 873, 1065, 1269
DpnII GATC 6 cut(s) 157, 566, 842, 871, 1063, 1267
DriI GACNNNNNGTC 1 cut(s) 302
EaeI YGGCCR 3 cut(s) 269, 391, 1284
EagI CGGCCG 1 cut(s) 269
Eam1104I CTCTTC 2 cut(s) 458, 854
Eam1105I GACNNNNNGTC 1 cut(s) 302
EarI CTCTTC 2 cut(s) 458, 854
EclXI CGGCCG 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 388
Eco24I GRGCYC 2 cut(s) 189, 563
Eco31I GGTCTC 1 cut(s) 543
Eco32I GATATC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 468, 767
Eco52I CGGCCG 1 cut(s) 269
Eco72I CACGTG 2 cut(s) 370, 432
EcoO109I RGGNCCY 2 cut(s) 708, 1229
EcoRV GATATC 1 cut(s) 131
EcoT14I CCWWGG 1 cut(s) 388
EcoT38I GRGCYC 2 cut(s) 189, 563
ErhI CCWWGG 1 cut(s) 388
Esp3I CGTCTC 2 cut(s) 491, 1104
FaeI CATG 4 cut(s) 101, 392, 1224, 1311
FaqI GGGAC 1 cut(s) 480
FatI CATG 4 cut(s) 97, 388, 1220, 1307
FauI CCCGC 1 cut(s) 1032
FauNDI CATATG 1 cut(s) 608
Fnu4HI GCNGC 9 cut(s) 143, 479, 482, 649, 743, 925, 964, 999, 1002
FokI GGATG 9 cut(s) 122, 410, 422, 458, 586, 740, 841, 1181, 1250
FriOI GRGCYC 2 cut(s) 189, 563
Fsp4HI GCNGC 9 cut(s) 143, 479, 482, 649, 743, 925, 964, 999, 1002
FspBI CTAG 3 cut(s) 299, 500, 522
GlaI GCGC 5 cut(s) 126, 436, 746, 748, 1048
GluI GCNGC 9 cut(s) 143, 479, 482, 649, 743, 925, 964, 999, 1002
HaeIII GGCC 8 cut(s) 142, 179, 271, 393, 709, 963, 1231, 1286
HgaI GACGC 2 cut(s) 473, 1293
HhaI GCGC 5 cut(s) 127, 437, 747, 749, 1049
Hin1II CATG 4 cut(s) 101, 392, 1224, 1311
Hin6I GCGC 5 cut(s) 125, 435, 745, 747, 1047
HinP1I GCGC 5 cut(s) 125, 435, 745, 747, 1047
HinfI GANTC 3 cut(s) 339, 414, 493
HphI GGTGA 2 cut(s) 413, 1268
Hpy166II GTNNAC 1 cut(s) 767
Hpy188I TCNGA 4 cut(s) 184, 246, 419, 427
Hpy188III TCNNGA 9 cut(s) 107, 116, 324, 343, 490, 564, 683, 692, 1107
Hpy8I GTNNAC 1 cut(s) 767
Hpy99I CGWCG 1 cut(s) 318
HpyAV CCTTC 5 cut(s) 398, 613, 678, 806, 928
HpyCH4III ACNGT 5 cut(s) 193, 314, 592, 1115, 1265
HpyCH4IV ACGT 3 cut(s) 168, 369, 431
HpyCH4V TGCA 6 cut(s) 277, 332, 786, 821, 984, 1322
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 759, 963, 1055, 1212
HpyF3I CTNAG 2 cut(s) 27, 1035
HpySE526I ACGT 3 cut(s) 168, 369, 431
Hsp92II CATG 4 cut(s) 101, 392, 1224, 1311
HspAI GCGC 5 cut(s) 125, 435, 745, 747, 1047
Kpn2I TCCGGA 2 cut(s) 342, 1106
Kzo9I GATC 6 cut(s) 157, 566, 842, 871, 1063, 1267
LmnI GCTCC 9 cut(s) 184, 235, 246, 326, 739, 838, 921, 946, 1029
Lsp1109I GCAGC 3 cut(s) 468, 490, 754
LweI GCATC 6 cut(s) 91, 100, 271, 522, 718, 1198
MaeI CTAG 3 cut(s) 299, 500, 522
MaeII ACGT 3 cut(s) 168, 369, 431
MaeIII GTNAC 4 cut(s) 164, 370, 637, 1091
MalI GATC 6 cut(s) 159, 568, 844, 873, 1065, 1269
MbiI CCGCTC 1 cut(s) 924
MboI GATC 6 cut(s) 157, 566, 842, 871, 1063, 1267
MboII GAAGA 6 cut(s) 89, 239, 472, 475, 674, 871
MflI RGATCY 3 cut(s) 157, 566, 1063
MhlI GDGCHC 3 cut(s) 189, 268, 563
MlsI TGGCCA 1 cut(s) 1286
MluCI AATT 3 cut(s) 585, 627, 804
MluNI TGGCCA 1 cut(s) 1286
MlyI GAGTC 2 cut(s) 348, 502
MmeI TCCRAC 5 cut(s) 204, 224, 270, 450, 705
Mox20I TGGCCA 1 cut(s) 1286
MroI TCCGGA 2 cut(s) 342, 1106
MscI TGGCCA 1 cut(s) 1286
MseI TTAA 1 cut(s) 1082
Msp20I TGGCCA 1 cut(s) 1286
MspA1I CMGCKG 1 cut(s) 481
MspR9I CCNGG 5 cut(s) 136, 137, 395, 675, 716
Mva1269I GAATGC 2 cut(s) 661, 1129
MvnI CGCG 7 cut(s) 127, 624, 651, 747, 749, 1049, 1200
MwoI GCNNNNNNNGC 5 cut(s) 110, 759, 963, 1055, 1212
NciI CCSGG 5 cut(s) 136, 137, 395, 675, 716
NcoI CCATGG 1 cut(s) 388
NdeI CATATG 1 cut(s) 608
NdeII GATC 6 cut(s) 157, 566, 842, 871, 1063, 1267
NlaIII CATG 4 cut(s) 101, 392, 1224, 1311
NlaIV GGNNCC 5 cut(s) 120, 141, 186, 597, 1230
NmeAIII GCCGAG 6 cut(s) 92, 97, 247, 757, 1000, 1030
NmuCI GTSAC 4 cut(s) 164, 370, 637, 1091
NspI RCATGY 1 cut(s) 1224
PaeR7I CTCGAG 1 cut(s) 562
PauI GCGCGC 1 cut(s) 745
PciI ACATGT 1 cut(s) 1220
PcsI WCGNNNNNNNCGW 1 cut(s) 322
PctI GAATGC 2 cut(s) 661, 1129
PfeI GAWTC 1 cut(s) 414
Pfl23II CGTACG 1 cut(s) 440
PflFI GACNNNGTC 1 cut(s) 771
PinAI ACCGGT 1 cut(s) 254
PkrI GCNGC 9 cut(s) 144, 480, 483, 650, 744, 926, 965, 1000, 1003
PleI GAGTC 2 cut(s) 347, 501
PmaCI CACGTG 2 cut(s) 370, 432
PmlI CACGTG 2 cut(s) 370, 432
PpsI GAGTC 2 cut(s) 347, 501
Ppu21I YACGTR 2 cut(s) 370, 432
PscI ACATGT 1 cut(s) 1220
PspCI CACGTG 2 cut(s) 370, 432
PspLI CGTACG 1 cut(s) 440
PspN4I GGNNCC 5 cut(s) 120, 141, 186, 597, 1230
PspPI GGNCC 7 cut(s) 140, 177, 468, 708, 767, 961, 1229
PsuI RGATCY 3 cut(s) 157, 566, 1063
PsyI GACNNNGTC 1 cut(s) 771
PteI GCGCGC 1 cut(s) 745
PvuII CAGCTG 1 cut(s) 481
RsaI GTAC 1 cut(s) 442
RsaNI GTAC 1 cut(s) 441
SaqAI TTAA 1 cut(s) 1082
SatI GCNGC 9 cut(s) 143, 479, 482, 649, 743, 925, 964, 999, 1002
Sau3AI GATC 6 cut(s) 157, 566, 842, 871, 1063, 1267
Sau96I GGNCC 7 cut(s) 140, 177, 468, 708, 767, 961, 1229
SchI GAGTC 2 cut(s) 348, 502
ScrFI CCNGG 5 cut(s) 136, 137, 395, 675, 716
SduI GDGCHC 3 cut(s) 189, 268, 563
SfaNI GCATC 6 cut(s) 91, 100, 271, 522, 718, 1198
Sfr274I CTCGAG 1 cut(s) 562
SinI GGWCC 2 cut(s) 468, 767
SlaI CTCGAG 1 cut(s) 562
SmaI CCCGGG 1 cut(s) 137
SmlI CTYRAG 3 cut(s) 562, 877, 893
SmoI CTYRAG 3 cut(s) 562, 877, 893
Sse9I AATT 3 cut(s) 585, 627, 804
SspMI CTAG 3 cut(s) 299, 500, 522
StyD4I CCNGG 5 cut(s) 134, 135, 393, 673, 714
StyI CCWWGG 1 cut(s) 388
TaaI ACNGT 5 cut(s) 193, 314, 592, 1115, 1265
TaiI ACGT 3 cut(s) 171, 372, 434
TaqI TCGA 5 cut(s) 316, 458, 516, 563, 756
TasI AATT 3 cut(s) 585, 627, 804
TauI GCSGC 6 cut(s) 145, 651, 927, 966, 1001, 1004
TfiI GAWTC 1 cut(s) 414
Tru1I TTAA 1 cut(s) 1082
Tru9I TTAA 1 cut(s) 1082
TscAI CASTG 1 cut(s) 783
TseFI GTSAC 4 cut(s) 164, 370, 637, 1091
TseI GCWGC 3 cut(s) 478, 481, 742
Tsp45I GTSAC 4 cut(s) 164, 370, 637, 1091
TspDTI ATGAA 2 cut(s) 595, 825
TspGWI ACGGA 1 cut(s) 458
TspMI CCCGGG 1 cut(s) 135
TspRI CASTG 1 cut(s) 783
Tth111I GACNNNGTC 1 cut(s) 771
VpaK11BI GGWCC 2 cut(s) 468, 767
XceI RCATGY 1 cut(s) 1224
XcmI CCANNNNNNNNNTGG 3 cut(s) 196, 395, 606
XhoI CTCGAG 1 cut(s) 562
XmaI CCCGGG 1 cut(s) 135
XspI CTAG 3 cut(s) 299, 500, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.