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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 86, 161 |
| AclWI | GGATC | 1 cut(s) | 313 |
| AgsI | TTSAA | 1 cut(s) | 176 |
| AluBI | AGCT | 3 cut(s) | 197, 281, 425 |
| AluI | AGCT | 3 cut(s) | 197, 281, 425 |
| Alw21I | GWGCWC | 3 cut(s) | 130, 400, 427 |
| Alw44I | GTGCAC | 1 cut(s) | 396 |
| AlwI | GGATC | 1 cut(s) | 313 |
| AoxI | GGCC | 2 cut(s) | 204, 249 |
| ApaLI | GTGCAC | 1 cut(s) | 396 |
| AspLEI | GCGC | 1 cut(s) | 187 |
| BaeGI | GKGCMC | 1 cut(s) | 400 |
| BanII | GRGCYC | 1 cut(s) | 427 |
| Bbv12I | GWGCWC | 3 cut(s) | 130, 400, 427 |
| BccI | CCATC | 2 cut(s) | 129, 280 |
| BclI | TGATCA | 1 cut(s) | 28 |
| BfaI | CTAG | 4 cut(s) | 90, 210, 278, 282 |
| BfmI | CTRYAG | 1 cut(s) | 36 |
| BisI | GCNGC | 1 cut(s) | 87 |
| BlsI | GCNGC | 1 cut(s) | 88 |
| BpmI | CTGGAG | 1 cut(s) | 42 |
| BsaJI | CCNNGG | 1 cut(s) | 348 |
| Bse1I | ACTGG | 2 cut(s) | 338, 380 |
| BseDI | CCNNGG | 1 cut(s) | 348 |
| BseGI | GGATG | 3 cut(s) | 117, 140, 291 |
| BseNI | ACTGG | 2 cut(s) | 338, 380 |
| BseSI | GKGCMC | 1 cut(s) | 400 |
| BshFI | GGCC | 2 cut(s) | 206, 251 |
| BsiHKAI | GWGCWC | 3 cut(s) | 130, 400, 427 |
| BsnI | GGCC | 2 cut(s) | 206, 251 |
| Bsp1286I | GDGCHC | 3 cut(s) | 130, 400, 427 |
| Bsp143I | GATC | 2 cut(s) | 28, 305 |
| BspACI | CCGC | 2 cut(s) | 86, 161 |
| BspANI | GGCC | 2 cut(s) | 206, 251 |
| BspHI | TCATGA | 1 cut(s) | 232 |
| BspPI | GGATC | 1 cut(s) | 313 |
| BspQI | GCTCTTC | 1 cut(s) | 415 |
| BsrI | ACTGG | 2 cut(s) | 338, 380 |
| BssECI | CCNNGG | 1 cut(s) | 348 |
| BssMI | GATC | 2 cut(s) | 28, 305 |
| Bst4CI | ACNGT | 2 cut(s) | 298, 349 |
| Bst6I | CTCTTC | 2 cut(s) | 231, 415 |
| BstC8I | GCNNGC | 1 cut(s) | 321 |
| BstDEI | CTNAG | 1 cut(s) | 426 |
| BstDSI | CCRYGG | 1 cut(s) | 348 |
| BstF5I | GGATG | 3 cut(s) | 117, 140, 291 |
| BstHHI | GCGC | 1 cut(s) | 187 |
| BstKTI | GATC | 2 cut(s) | 31, 308 |
| BstMBI | GATC | 2 cut(s) | 28, 305 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 203, 325, 334 |
| BstSFI | CTRYAG | 1 cut(s) | 36 |
| BstSLI | GKGCMC | 1 cut(s) | 400 |
| BsuRI | GGCC | 2 cut(s) | 206, 251 |
| BtgI | CCRYGG | 1 cut(s) | 348 |
| BtsCI | GGATG | 3 cut(s) | 117, 140, 291 |
| BtsIMutI | CAGTG | 2 cut(s) | 303, 387 |
| Cac8I | GCNNGC | 1 cut(s) | 321 |
| CciI | TCATGA | 1 cut(s) | 232 |
| CfoI | GCGC | 1 cut(s) | 187 |
| CviAII | CATG | 2 cut(s) | 32, 233 |
| DdeI | CTNAG | 1 cut(s) | 426 |
| DpnI | GATC | 2 cut(s) | 30, 307 |
| DpnII | GATC | 2 cut(s) | 28, 305 |
| Eam1104I | CTCTTC | 2 cut(s) | 231, 415 |
| EarI | CTCTTC | 2 cut(s) | 231, 415 |
| EciI | GGCGGA | 1 cut(s) | 176 |
| Ecl136II | GAGCTC | 1 cut(s) | 425 |
| Eco147I | AGGCCT | 1 cut(s) | 206 |
| Eco24I | GRGCYC | 1 cut(s) | 427 |
| Eco53kI | GAGCTC | 1 cut(s) | 425 |
| EcoICRI | GAGCTC | 1 cut(s) | 425 |
| EcoT38I | GRGCYC | 1 cut(s) | 427 |
| FaeI | CATG | 2 cut(s) | 35, 236 |
| FaiI | YATR | 8 cut(s) | 15, 33, 48, 50, 167, 234, 415, 417 |
| FatI | CATG | 2 cut(s) | 31, 232 |
| FauNDI | CATATG | 1 cut(s) | 415 |
| FbaI | TGATCA | 1 cut(s) | 28 |
| Fnu4HI | GCNGC | 1 cut(s) | 87 |
| FokI | GGATG | 3 cut(s) | 124, 147, 298 |
| FriOI | GRGCYC | 1 cut(s) | 427 |
| Fsp4HI | GCNGC | 1 cut(s) | 87 |
| FspBI | CTAG | 4 cut(s) | 90, 210, 278, 282 |
| GlaI | GCGC | 1 cut(s) | 186 |
| GluI | GCNGC | 1 cut(s) | 87 |
| GsuI | CTGGAG | 1 cut(s) | 42 |
| HaeIII | GGCC | 2 cut(s) | 206, 251 |
| HhaI | GCGC | 1 cut(s) | 187 |
| Hin1II | CATG | 2 cut(s) | 35, 236 |
| Hin6I | GCGC | 1 cut(s) | 185 |
| HinP1I | GCGC | 1 cut(s) | 185 |
| Hpy166II | GTNNAC | 1 cut(s) | 398 |
| Hpy188I | TCNGA | 1 cut(s) | 273 |
| Hpy188III | TCNNGA | 2 cut(s) | 59, 233 |
| Hpy8I | GTNNAC | 1 cut(s) | 398 |
| Hpy99I | CGWCG | 1 cut(s) | 394 |
| HpyAV | CCTTC | 1 cut(s) | 239 |
| HpyCH4III | ACNGT | 2 cut(s) | 298, 349 |
| HpyCH4V | TGCA | 1 cut(s) | 398 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 203, 325, 334 |
| HpyF3I | CTNAG | 1 cut(s) | 426 |
| Hsp92II | CATG | 2 cut(s) | 35, 236 |
| HspAI | GCGC | 1 cut(s) | 185 |
| Ksp22I | TGATCA | 1 cut(s) | 28 |
| Kzo9I | GATC | 2 cut(s) | 28, 305 |
| LguI | GCTCTTC | 1 cut(s) | 415 |
| LpnPI | CCDG | 5 cut(s) | 72, 116, 131, 351, 393 |
| MaeI | CTAG | 4 cut(s) | 90, 210, 278, 282 |
| MaeIII | GTNAC | 3 cut(s) | 222, 259, 382 |
| MalI | GATC | 2 cut(s) | 30, 307 |
| MboI | GATC | 2 cut(s) | 28, 305 |
| MboII | GAAGA | 2 cut(s) | 248, 432 |
| MhlI | GDGCHC | 3 cut(s) | 130, 400, 427 |
| MluCI | AATT | 2 cut(s) | 10, 43 |
| MnlI | CCTC | 9 cut(s) | 76, 135, 163, 184, 196, 211, 217, 234, 397 |
| MseI | TTAA | 1 cut(s) | 342 |
| MslI | CAYNNNNRTG | 1 cut(s) | 133 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 203, 325, 334 |
| NdeI | CATATG | 1 cut(s) | 415 |
| NdeII | GATC | 2 cut(s) | 28, 305 |
| NlaIII | CATG | 2 cut(s) | 35, 236 |
| NmeAIII | GCCGAG | 1 cut(s) | 130 |
| NmuCI | GTSAC | 1 cut(s) | 382 |
| PagI | TCATGA | 1 cut(s) | 232 |
| PceI | AGGCCT | 1 cut(s) | 206 |
| PciSI | GCTCTTC | 1 cut(s) | 415 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 398 |
| PkrI | GCNGC | 1 cut(s) | 88 |
| Psp124BI | GAGCTC | 1 cut(s) | 427 |
| RseI | CAYNNNNRTG | 1 cut(s) | 133 |
| SacI | GAGCTC | 1 cut(s) | 427 |
| SapI | GCTCTTC | 1 cut(s) | 415 |
| SaqAI | TTAA | 1 cut(s) | 342 |
| SatI | GCNGC | 1 cut(s) | 87 |
| Sau3AI | GATC | 2 cut(s) | 28, 305 |
| SduI | GDGCHC | 3 cut(s) | 130, 400, 427 |
| SetI | ASST | 9 cut(s) | 8, 174, 195, 199, 279, 283, 389, 409, 427 |
| SfcI | CTRYAG | 1 cut(s) | 36 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 133 |
| Sse9I | AATT | 2 cut(s) | 10, 43 |
| SseBI | AGGCCT | 1 cut(s) | 206 |
| SsiI | CCGC | 2 cut(s) | 86, 161 |
| SspMI | CTAG | 4 cut(s) | 90, 210, 278, 282 |
| SstI | GAGCTC | 1 cut(s) | 427 |
| StuI | AGGCCT | 1 cut(s) | 206 |
| TaaI | ACNGT | 2 cut(s) | 298, 349 |
| TaqI | TCGA | 1 cut(s) | 389 |
| TasI | AATT | 2 cut(s) | 10, 43 |
| TauI | GCSGC | 1 cut(s) | 89 |
| Tru1I | TTAA | 1 cut(s) | 342 |
| Tru9I | TTAA | 1 cut(s) | 342 |
| TscAI | CASTG | 2 cut(s) | 303, 387 |
| TseFI | GTSAC | 1 cut(s) | 382 |
| Tsp45I | GTSAC | 1 cut(s) | 382 |
| TspDTI | ATGAA | 4 cut(s) | 92, 128, 221, 249 |
| TspRI | CASTG | 2 cut(s) | 303, 387 |
| VneI | GTGCAC | 1 cut(s) | 396 |
| XspI | CTAG | 4 cut(s) | 90, 210, 278, 282 |