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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 247, 340 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 148 |
| AccBSI | CCGCTC | 2 cut(s) | 112, 430 |
| AccII | CGCG | 3 cut(s) | 118, 120, 159 |
| AccIII | TCCGGA | 1 cut(s) | 322 |
| AciI | CCGC | 3 cut(s) | 112, 134, 430 |
| AclWI | GGATC | 1 cut(s) | 333 |
| AcoI | YGGCCR | 1 cut(s) | 55 |
| AcvI | CACGTG | 1 cut(s) | 331 |
| AdeI | CACNNNGTG | 2 cut(s) | 20, 334 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 41, 148, 193, 385 |
| AgsI | TTSAA | 2 cut(s) | 128, 250 |
| AjnI | CCWGG | 1 cut(s) | 186 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 336, 368 |
| AluBI | AGCT | 5 cut(s) | 77, 94, 124, 286, 397 |
| AluI | AGCT | 5 cut(s) | 77, 94, 124, 286, 397 |
| AlwI | GGATC | 1 cut(s) | 333 |
| Ama87I | CYCGRG | 2 cut(s) | 41, 213 |
| Aor13HI | TCCGGA | 1 cut(s) | 322 |
| AoxI | GGCC | 3 cut(s) | 55, 184, 225 |
| ApeKI | GCWGC | 4 cut(s) | 11, 82, 293, 296 |
| AspLEI | GCGC | 4 cut(s) | 118, 120, 159, 270 |
| AspS9I | GGNCC | 2 cut(s) | 139, 376 |
| AvaI | CYCGRG | 2 cut(s) | 41, 213 |
| AvaII | GGWCC | 2 cut(s) | 139, 376 |
| BalI | TGGCCA | 1 cut(s) | 57 |
| BanII | GRGCYC | 1 cut(s) | 214 |
| BbrPI | CACGTG | 1 cut(s) | 331 |
| BbvCI | CCTCAGC | 1 cut(s) | 222 |
| BbvI | GCAGC | 3 cut(s) | 69, 280, 283 |
| BccI | CCATC | 2 cut(s) | 176, 418 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 272, 306 |
| BciT130I | CCWGG | 1 cut(s) | 188 |
| BfmI | CTRYAG | 1 cut(s) | 362 |
| BfuAI | ACCTGC | 2 cut(s) | 247, 340 |
| BisI | GCNGC | 5 cut(s) | 12, 83, 294, 297, 431 |
| BlsI | GCNGC | 5 cut(s) | 13, 84, 295, 298, 432 |
| Bme1390I | CCNGG | 1 cut(s) | 188 |
| Bme18I | GGWCC | 2 cut(s) | 139, 376 |
| BmeT110I | CYCGRG | 2 cut(s) | 41, 213 |
| BmgT120I | GGNCC | 2 cut(s) | 139, 376 |
| BmiI | GGNNCC | 1 cut(s) | 315 |
| BmrFI | CCNGG | 1 cut(s) | 188 |
| BoxI | GACNNNNGTC | 1 cut(s) | 144 |
| Bpu10I | CCTNAGC | 2 cut(s) | 222, 434 |
| BsaAI | YACGTR | 1 cut(s) | 331 |
| BsaJI | CCNNGG | 3 cut(s) | 40, 142, 187 |
| BsaWI | WCCGGW | 1 cut(s) | 322 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 41, 148, 193, 385 |
| Bse3DI | GCAATG | 1 cut(s) | 277 |
| BseAI | TCCGGA | 1 cut(s) | 322 |
| BseBI | CCWGG | 1 cut(s) | 188 |
| BseDI | CCNNGG | 3 cut(s) | 40, 142, 187 |
| BseGI | GGATG | 2 cut(s) | 187, 394 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 41, 148, 193, 385 |
| BseMI | GCAATG | 1 cut(s) | 277 |
| BseMII | CTCAG | 1 cut(s) | 213 |
| BsePI | GCGCGC | 1 cut(s) | 116 |
| BseXI | GCAGC | 3 cut(s) | 69, 280, 283 |
| Bsh1236I | CGCG | 3 cut(s) | 118, 120, 159 |
| BshFI | GGCC | 3 cut(s) | 57, 186, 227 |
| BsiHKCI | CYCGRG | 2 cut(s) | 41, 213 |
| BsiSI | CCGG | 1 cut(s) | 323 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 41, 148, 193, 385 |
| BsnI | GGCC | 3 cut(s) | 57, 186, 227 |
| BsoBI | CYCGRG | 2 cut(s) | 41, 213 |
| Bsp1286I | GDGCHC | 1 cut(s) | 214 |
| Bsp13I | TCCGGA | 1 cut(s) | 322 |
| Bsp143I | GATC | 2 cut(s) | 64, 325 |
| BspACI | CCGC | 3 cut(s) | 112, 134, 430 |
| BspANI | GGCC | 3 cut(s) | 57, 186, 227 |
| BspCNI | CTCAG | 2 cut(s) | 214, 447 |
| BspEI | TCCGGA | 1 cut(s) | 322 |
| BspFNI | CGCG | 3 cut(s) | 118, 120, 159 |
| BspLI | GGNNCC | 1 cut(s) | 315 |
| BspMAI | CTGCAG | 1 cut(s) | 366 |
| BspMI | ACCTGC | 2 cut(s) | 247, 340 |
| BspPI | GGATC | 1 cut(s) | 333 |
| BspQI | GCTCTTC | 1 cut(s) | 225 |
| BsrBI | CCGCTC | 2 cut(s) | 112, 430 |
| BsrDI | GCAATG | 1 cut(s) | 277 |
| BssECI | CCNNGG | 3 cut(s) | 40, 142, 187 |
| BssHII | GCGCGC | 1 cut(s) | 116 |
| BssMI | GATC | 2 cut(s) | 64, 325 |
| BssT1I | CCWWGG | 1 cut(s) | 142 |
| Bst2UI | CCWGG | 1 cut(s) | 188 |
| Bst4CI | ACNGT | 1 cut(s) | 380 |
| Bst6I | CTCTTC | 1 cut(s) | 225 |
| BstBAI | YACGTR | 1 cut(s) | 331 |
| BstC8I | GCNNGC | 6 cut(s) | 16, 114, 118, 122, 174, 406 |
| BstDEI | CTNAG | 3 cut(s) | 222, 301, 434 |
| BstF5I | GGATG | 2 cut(s) | 187, 394 |
| BstFNI | CGCG | 3 cut(s) | 118, 120, 159 |
| BstHHI | GCGC | 4 cut(s) | 118, 120, 159, 270 |
| BstKTI | GATC | 2 cut(s) | 67, 328 |
| BstMBI | GATC | 2 cut(s) | 64, 325 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 91, 218 |
| BstNI | CCWGG | 1 cut(s) | 188 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 144 |
| BstSCI | CCNGG | 1 cut(s) | 186 |
| BstSFI | CTRYAG | 1 cut(s) | 362 |
| BstUI | CGCG | 3 cut(s) | 118, 120, 159 |
| BstV1I | GCAGC | 3 cut(s) | 69, 280, 283 |
| BsuRI | GGCC | 3 cut(s) | 57, 186, 227 |
| BtsCI | GGATG | 2 cut(s) | 187, 394 |
| BveI | ACCTGC | 2 cut(s) | 247, 340 |
| Cac8I | GCNNGC | 6 cut(s) | 16, 114, 118, 122, 174, 406 |
| CfoI | GCGC | 4 cut(s) | 118, 120, 159, 270 |
| Cfr13I | GGNCC | 2 cut(s) | 139, 376 |
| CseI | GACGC | 1 cut(s) | 224 |
| CviAII | CATG | 1 cut(s) | 36 |
| DdeI | CTNAG | 3 cut(s) | 222, 301, 434 |
| DpnI | GATC | 2 cut(s) | 66, 327 |
| DpnII | GATC | 2 cut(s) | 64, 325 |
| DraIII | CACNNNGTG | 2 cut(s) | 20, 334 |
| EaeI | YGGCCR | 1 cut(s) | 55 |
| Eam1104I | CTCTTC | 1 cut(s) | 225 |
| EarI | CTCTTC | 1 cut(s) | 225 |
| Eco130I | CCWWGG | 1 cut(s) | 142 |
| Eco24I | GRGCYC | 1 cut(s) | 214 |
| Eco47I | GGWCC | 2 cut(s) | 139, 376 |
| Eco72I | CACGTG | 1 cut(s) | 331 |
| Eco88I | CYCGRG | 2 cut(s) | 41, 213 |
| EcoRII | CCWGG | 1 cut(s) | 186 |
| EcoT14I | CCWWGG | 1 cut(s) | 142 |
| EcoT38I | GRGCYC | 1 cut(s) | 214 |
| ErhI | CCWWGG | 1 cut(s) | 142 |
| FaeI | CATG | 1 cut(s) | 39 |
| FaiI | YATR | 4 cut(s) | 9, 37, 74, 167 |
| FatI | CATG | 1 cut(s) | 35 |
| FauI | CCCGC | 1 cut(s) | 105 |
| Fnu4HI | GCNGC | 5 cut(s) | 12, 83, 294, 297, 431 |
| FokI | GGATG | 2 cut(s) | 194, 401 |
| FriOI | GRGCYC | 1 cut(s) | 214 |
| Fsp4HI | GCNGC | 5 cut(s) | 12, 83, 294, 297, 431 |
| GlaI | GCGC | 4 cut(s) | 117, 119, 158, 269 |
| GluI | GCNGC | 5 cut(s) | 12, 83, 294, 297, 431 |
| HaeIII | GGCC | 3 cut(s) | 57, 186, 227 |
| HapII | CCGG | 1 cut(s) | 323 |
| HgaI | GACGC | 1 cut(s) | 224 |
| HhaI | GCGC | 4 cut(s) | 118, 120, 159, 270 |
| Hin1II | CATG | 1 cut(s) | 39 |
| Hin6I | GCGC | 4 cut(s) | 116, 118, 157, 268 |
| HinP1I | GCGC | 4 cut(s) | 116, 118, 157, 268 |
| HinfI | GANTC | 1 cut(s) | 358 |
| HpaII | CCGG | 1 cut(s) | 323 |
| Hpy166II | GTNNAC | 4 cut(s) | 23, 139, 376, 383 |
| Hpy188III | TCNNGA | 5 cut(s) | 68, 103, 263, 323, 436 |
| Hpy8I | GTNNAC | 4 cut(s) | 23, 139, 376, 383 |
| HpyAV | CCTTC | 1 cut(s) | 338 |
| HpyCH4III | ACNGT | 1 cut(s) | 380 |
| HpyCH4IV | ACGT | 1 cut(s) | 330 |
| HpyCH4V | TGCA | 4 cut(s) | 14, 85, 241, 364 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 91, 218 |
| HpyF3I | CTNAG | 3 cut(s) | 222, 301, 434 |
| HpySE526I | ACGT | 1 cut(s) | 330 |
| Hsp92II | CATG | 1 cut(s) | 39 |
| HspAI | GCGC | 4 cut(s) | 116, 118, 157, 268 |
| Kpn2I | TCCGGA | 1 cut(s) | 322 |
| Kzo9I | GATC | 2 cut(s) | 64, 325 |
| LguI | GCTCTTC | 1 cut(s) | 225 |
| LmnI | GCTCC | 8 cut(s) | 91, 109, 154, 199, 265, 319, 394, 427 |
| Lsp1109I | GCAGC | 3 cut(s) | 69, 280, 283 |
| MaeII | ACGT | 1 cut(s) | 330 |
| MalI | GATC | 2 cut(s) | 66, 327 |
| MbiI | CCGCTC | 2 cut(s) | 112, 430 |
| MboI | GATC | 2 cut(s) | 64, 325 |
| MboII | GAAGA | 1 cut(s) | 242 |
| MhlI | GDGCHC | 1 cut(s) | 214 |
| MlsI | TGGCCA | 1 cut(s) | 57 |
| MluCI | AATT | 1 cut(s) | 29 |
| MluNI | TGGCCA | 1 cut(s) | 57 |
| MnlI | CCTC | 9 cut(s) | 50, 99, 154, 172, 217, 360, 364, 405, 409 |
| Mox20I | TGGCCA | 1 cut(s) | 57 |
| MroI | TCCGGA | 1 cut(s) | 322 |
| MscI | TGGCCA | 1 cut(s) | 57 |
| Msp20I | TGGCCA | 1 cut(s) | 57 |
| MspI | CCGG | 1 cut(s) | 323 |
| MspR9I | CCNGG | 1 cut(s) | 188 |
| MvaI | CCWGG | 1 cut(s) | 188 |
| MvnI | CGCG | 3 cut(s) | 118, 120, 159 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 91, 218 |
| NdeII | GATC | 2 cut(s) | 64, 325 |
| NlaIII | CATG | 1 cut(s) | 39 |
| NlaIV | GGNNCC | 1 cut(s) | 315 |
| PaeR7I | CTCGAG | 1 cut(s) | 213 |
| PauI | GCGCGC | 1 cut(s) | 116 |
| PciSI | GCTCTTC | 1 cut(s) | 225 |
| PfeI | GAWTC | 1 cut(s) | 358 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 148 |
| PkrI | GCNGC | 5 cut(s) | 13, 84, 295, 298, 432 |
| PmaCI | CACGTG | 1 cut(s) | 331 |
| PmlI | CACGTG | 1 cut(s) | 331 |
| Ppu21I | YACGTR | 1 cut(s) | 331 |
| PshAI | GACNNNNGTC | 1 cut(s) | 144 |
| Psp6I | CCWGG | 1 cut(s) | 186 |
| PspCI | CACGTG | 1 cut(s) | 331 |
| PspGI | CCWGG | 1 cut(s) | 186 |
| PspN4I | GGNNCC | 1 cut(s) | 315 |
| PspPI | GGNCC | 2 cut(s) | 139, 376 |
| PspXI | VCTCGAGB | 1 cut(s) | 213 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 15, 47 |
| PstI | CTGCAG | 1 cut(s) | 366 |
| PteI | GCGCGC | 1 cut(s) | 116 |
| SapI | GCTCTTC | 1 cut(s) | 225 |
| SatI | GCNGC | 5 cut(s) | 12, 83, 294, 297, 431 |
| Sau3AI | GATC | 2 cut(s) | 64, 325 |
| Sau96I | GGNCC | 2 cut(s) | 139, 376 |
| ScrFI | CCNGG | 1 cut(s) | 188 |
| SduI | GDGCHC | 1 cut(s) | 214 |
| SfcI | CTRYAG | 1 cut(s) | 362 |
| Sfr274I | CTCGAG | 1 cut(s) | 213 |
| SinI | GGWCC | 2 cut(s) | 139, 376 |
| SlaI | CTCGAG | 1 cut(s) | 213 |
| SmlI | CTYRAG | 1 cut(s) | 213 |
| SmoI | CTYRAG | 1 cut(s) | 213 |
| Sse9I | AATT | 1 cut(s) | 29 |
| SsiI | CCGC | 3 cut(s) | 112, 134, 430 |
| StyD4I | CCNGG | 1 cut(s) | 186 |
| StyI | CCWWGG | 1 cut(s) | 142 |
| TaaI | ACNGT | 1 cut(s) | 380 |
| TaiI | ACGT | 1 cut(s) | 333 |
| TaqI | TCGA | 3 cut(s) | 102, 214, 282 |
| TasI | AATT | 1 cut(s) | 29 |
| TauI | GCSGC | 1 cut(s) | 433 |
| TfiI | GAWTC | 1 cut(s) | 358 |
| TseI | GCWGC | 4 cut(s) | 11, 82, 293, 296 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 148 |
| VpaK11BI | GGWCC | 2 cut(s) | 139, 376 |
| XhoI | CTCGAG | 1 cut(s) | 213 |