Rroxscaffold_7G00176660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000075
Physical Location & Seq
Reverse (-)
16317862 .. 16321918
4057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176660.1

Sequence Viewer

Length: 1719 bp
ATGGCACGTGAGAACCGCGGCCGCGGTAGGAGAGAGGGTTCCTCTCGAGGAGGGGAAGGAACCTCCCGTGGTGGCTTCGGTGCTTCCGGTGGAGGGGCGAGGGTGCTTCTAGCGGTCCACGGTGGAGGTGGCCCCGCGGGTTGTTCCCGGGGAGTTGGCGAGGAGCTTCCTAGGAGGTGGTGGGGGAGCTCCTCGCGCGGAGTATCGTGGGGACTTCCCGAGGAAGTGGCGAGGGTTCATCTCGTGGAGTTCCGAGATGAGTTTGACCACGCCGGAGCGAAGCGTGTGGCAAGGGTGATGGGTGCTTTTCCCAAGGGGATGAGGGGGTTCTATCGTCCGTGTAGACTTTCAATATACGAGAGATTTGAGTCGGGGAGGTTTCGGTTTCCCGATGCCGTGCCGGAGTATCTCAACCGGCGGGCCGAGGAAGAAGCCGGTGCCGAGGGGCATGAGGTTCGTGGTGTTCGGGAGTCGACTCAAGATGCCCAGAGCCGCCCACGCAGGTCCGGAGGTGAGGATCCGGGTGATGTGGCTCGTGCCTCAGGAGTCCACGGTGGAGGTGGAGATCTCCATCGAGGAGCGGTTGGAGGAGGTGGAGCGGCGTCGTCGAGCGATACTAGTGCTCGTGCTCGCCCGGTGCGGATGCTCGTTCGGGATAATTTGGAAACAGTTTTTGGTGATGAGATTGGCGATCCCGTCTCGCGGGAGTGCGGTGGACCAAGGCCGGTGGAGCGCGAGGATATGAGGCAAGTAATTGATGAAGGGATCACGAGGAGGATGGAGCTGGAACGAGCACTTGCCATAGAGGAGGCTCGTAGTCAAGAGGCCGAGGGTGCTATCGCTCTTCCGAGGGAGGCAAACCCGGATCTAACCAGGAAGCCGCAGCAGGCGGAGGATGGCCCGAGGTTGGTGGAGCAAGTTAAGGCCCGGTCGCCGAGGCCGGCGGCGTCTACGTGGACTTGGAAAGCGCGTGTCCGAGAGCTCGATGCCGAGTCGGGAGCTTCGGCCACCGCCTTGGAGAGTTTGGCTCCTTATCCCGACCCCGTGGTGGATTTAGAGGCAAGCGAGAGGAGGCGAGATGGAGCGACTCGGGGAAGGAGTTGGCCGAGCAACAGTGCTCGATCGAGTAATTTTGCCGAGGAGTGCATTTGCTTGCGATATGCCGCCGAGACGCATCGGGACAAGCTCGCCAAGGCTAGGCGAGATGATGGTATAGCTCGGTTGGATCGACCAAGAGAAGATGGTTCGGGATATGCAGGCAAGAAGGCGGCGAGATCGCAAGCCGTCGTAAGTGGTGGTCGAGGTATTGGGGTTGTGATCCGGGAGCAGCGCATCGGAGCATGCTTCGGGCCGAGCCGGATATCTCGAGGCGAAGGTGCTACTAGCGAGCGGGGGCCCGTGGCTAAGATGGCAAGGTGCAAGGCGAGGATGTCGGGGAGCGAGATGGGGTGGAGGAGCGAGATTGAGTCATTAAGGCAACGCGACGACCGGTTGTCCGGACCTAATCTCACAAGGACTCGGCTTCATCACCGCTTGGGGATTGCGCAATTTGTGCTCTTGAACCGAAAACTTGTCCAAGTGAGAAACCCAAGGACCAAGATTGTTGGTGGTGCGGCGGGCTACAATGATGGAGATCTGGTGGTGATATGGAGGAGAGTGGTGAGCCGCATCGCCCCCGCCTTTCCCACCATTGCCCGGCCAGCCTATCAATCCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

572

Amino Acids

62.16

Weight (kDa)

10.21

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000075)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0348161 RchiOBHm_Chr1g0367481 RchiOBHm_Chr1g0368431 RchiOBHm_Chr2g0116021 RchiOBHm_Chr2g0133961 RchiOBHm_Chr4g0390151 RchiOBHm_Chr4g0402771 RchiOBHm_Chr4g0419581 RchiOBHm_Chr5g0054351 RchiOBHm_Chr6g0278891 RchiOBHm_Chr7g0201941 RchiOBHm_Chr7g0242761
rosa_laevigata RLG00000002487 RLG00000002488 RLG00000003412 RLG00000003415 RLG00000013607 RLG00000018981 RLG00000018982 RLG00000034520 RLG00000034521
rosa_multiflora Rmu_co8024510.1_g000001 Rmu_co8121892.1_g000001 Rmu_co8133046.1_g000001 Rmu_co8158032.1_g000001 Rmu_co8181114.1_g000001 Rmu_co8202532.1_g000001 Rmu_co8331471.1_g000001 Rmu_co8340209.1_g000001 Rmu_co8359899.1_g000001 Rmu_co8433657.1_g000002 Rmu_co8436419.1_g000002 Rmu_co8458211.1_g000002 Rmu_co8458731.1_g000002 Rmu_co8466361.1_g000001 Rmu_co8474565.1_g000001 Rmu_co8474565.1_g000002 Rmu_co8482201.1_g000001 Rmu_co8491967.1_g000003 Rmu_co8498095.1_g000001 Rmu_co8513217.1_g000002 Rmu_co8518257.1_g000001 Rmu_co8520425.1_g000003 Rmu_co8521283.1_g000003 Rmu_sc0000029.1_g000029 Rmu_sc0000082.1_g000019 Rmu_sc0000147.1_g000107 Rmu_sc0000212.1_g000005 Rmu_sc0000247.1_g000030 Rmu_sc0000367.1_g000175 Rmu_sc0000433.1_g000035 Rmu_sc0000538.1_g000038 Rmu_sc0000550.1_g000010 Rmu_sc0000635.1_g000007 Rmu_sc0000650.1_g000012 Rmu_sc0000652.1_g000009 Rmu_sc0000652.1_g000010 Rmu_sc0000742.1_g000010 Rmu_sc0000750.1_g000007 Rmu_sc0000750.1_g000008 Rmu_sc0000772.1_g000018 Rmu_sc0000830.1_g000026 Rmu_sc0000859.1_g000006 Rmu_sc0001190.1_g000039 Rmu_sc0001190.1_g000050 Rmu_sc0001190.1_g000051 Rmu_sc0001205.1_g000008 Rmu_sc0001294.1_g000025 Rmu_sc0001366.1_g000010 Rmu_sc0001373.1_g000036 Rmu_sc0001423.1_g000046 Rmu_sc0001788.1_g000014 Rmu_sc0001801.1_g000016 Rmu_sc0001849.1_g000032 Rmu_sc0001967.1_g000002 Rmu_sc0002082.1_g000066 Rmu_sc0002250.1_g000013 Rmu_sc0002322.1_g000039 Rmu_sc0002371.1_g000002 Rmu_sc0002522.1_g000036 Rmu_sc0002532.1_g000048 Rmu_sc0002669.1_g000065 Rmu_sc0002669.1_g000067 Rmu_sc0002669.1_g000069 Rmu_sc0002834.1_g000007 Rmu_sc0003226.1_g000070 Rmu_sc0003260.1_g000018 Rmu_sc0003313.1_g000007 Rmu_sc0003441.1_g000018 Rmu_sc0003490.1_g000008 Rmu_sc0003705.1_g000011 Rmu_sc0003737.1_g000013 Rmu_sc0003748.1_g000020 Rmu_sc0003910.1_g000015 Rmu_sc0003919.1_g000029 Rmu_sc0003919.1_g000031 Rmu_sc0004037.1_g000012 Rmu_sc0004099.1_g000003 Rmu_sc0004122.1_g000013 Rmu_sc0004402.1_g000013 Rmu_sc0004646.1_g000035 Rmu_sc0004688.1_g000024 Rmu_sc0004823.1_g000046 Rmu_sc0004869.1_g000003 Rmu_sc0004869.1_g000004 Rmu_sc0005132.1_g000035 Rmu_sc0005190.1_g000001 Rmu_sc0005229.1_g000005 Rmu_sc0005229.1_g000023 Rmu_sc0005363.1_g000034 Rmu_sc0005537.1_g000006 Rmu_sc0005657.1_g000024 Rmu_sc0005856.1_g000011 Rmu_sc0005856.1_g000012 Rmu_sc0005953.1_g000007 Rmu_sc0005971.1_g000015 Rmu_sc0006287.1_g000004 Rmu_sc0006315.1_g000014 Rmu_sc0006518.1_g000003 Rmu_sc0006695.1_g000066 Rmu_sc0006803.1_g000056 Rmu_sc0006822.1_g000002 Rmu_sc0006926.1_g000011 Rmu_sc0007560.1_g000008 Rmu_sc0007582.1_g000005 Rmu_sc0007618.1_g000025 Rmu_sc0007647.1_g000004 Rmu_sc0007656.1_g000013 Rmu_sc0007877.1_g000011 Rmu_sc0008528.1_g000005 Rmu_sc0008528.1_g000006 Rmu_sc0008749.1_g000004 Rmu_sc0008989.1_g000003 Rmu_sc0009120.1_g000010 Rmu_sc0009663.1_g000009 Rmu_sc0010035.1_g000001 Rmu_sc0010160.1_g000010 Rmu_sc0010160.1_g000011 Rmu_sc0010953.1_g000004 Rmu_sc0011008.1_g000006 Rmu_sc0011452.1_g000009 Rmu_sc0012746.1_g000014 Rmu_sc0013612.1_g000017 Rmu_sc0013951.1_g000011 Rmu_sc0014162.1_g000009 Rmu_sc0014162.1_g000010 Rmu_sc0016149.1_g000003 Rmu_sc0016418.1_g000008 Rmu_sc0016418.1_g000009 Rmu_sc0017353.1_g000001 Rmu_sc0017353.1_g000002 Rmu_sc0018537.1_g000012 Rmu_sc0019739.1_g000003 Rmu_sc0019739.1_g000004 Rmu_sc0020186.1_g000016 Rmu_sc0021611.1_g000001 Rmu_sc0022755.1_g000003 Rmu_sc0024226.1_g000006 Rmu_sc0025769.1_g000004 Rmu_sc0025769.1_g000005 Rmu_sc0030235.1_g000004 Rmu_sc0035508.1_g000007 Rmu_sc0036413.1_g000001 Rmu_sc0037646.1_g000001 Rmu_sc0037646.1_g000002 Rmu_sc0037647.1_g000001 Rmu_sc0037647.1_g000002 Rmu_sc0037678.1_g000001 Rmu_ssc0000072.1_g000010 Rmu_ssc0000116.1_g000041 Rmu_ssc0000127.1_g000018 Rmu_ssc0000175.1_g000018 Rmu_ssc0000175.1_g000019 Rmu_ssc0000175.1_g000020 Rmu_ssc0000197.1_g000037 Rmu_ssc0000213.1_g000051 Rmu_ssc0000359.1_g000008 Rmu_ssc0000392.1_g000019
rosa_roxburghii Rroxscaffold_154G00447930 Rroxscaffold_1G00000570 Rroxscaffold_1G00009890 Rroxscaffold_1G00012210 Rroxscaffold_1G00012960 Rroxscaffold_1G00014650 Rroxscaffold_1G00014660 Rroxscaffold_1G00014670 Rroxscaffold_1G00022880 Rroxscaffold_1G00024640 Rroxscaffold_1G00024650 Rroxscaffold_1G00025670 Rroxscaffold_1G00025680 Rroxscaffold_1G00025690 Rroxscaffold_1G00030660 Rroxscaffold_1G00031340 Rroxscaffold_1G00031350 Rroxscaffold_2G00103100 Rroxscaffold_2G00103120 Rroxscaffold_2G00107390 Rroxscaffold_2G00108940 Rroxscaffold_2G00110610 Rroxscaffold_2G00110620 Rroxscaffold_2G00110710 Rroxscaffold_2G00110720 Rroxscaffold_2G00110730 Rroxscaffold_2G00111170 Rroxscaffold_2G00111510 Rroxscaffold_2G00114750 Rroxscaffold_2G00114760 Rroxscaffold_2G00114770 Rroxscaffold_2G00116270 Rroxscaffold_2G00121090 Rroxscaffold_2G00129350 Rroxscaffold_2G00130410 Rroxscaffold_2G00155930 Rroxscaffold_3G00218120 Rroxscaffold_3G00218330 Rroxscaffold_3G00218340 Rroxscaffold_3G00227530 Rroxscaffold_3G00233140 Rroxscaffold_3G00236800 Rroxscaffold_3G00242370 Rroxscaffold_3G00242380 Rroxscaffold_3G00242410 Rroxscaffold_3G00248720 Rroxscaffold_3G00248730 Rroxscaffold_3G00248770 Rroxscaffold_3G00258550 Rroxscaffold_3G00258560 Rroxscaffold_4G00287000 Rroxscaffold_4G00289070 Rroxscaffold_4G00289080 Rroxscaffold_4G00289100 Rroxscaffold_4G00295600 Rroxscaffold_4G00298090 Rroxscaffold_4G00308330 Rroxscaffold_4G00310570 Rroxscaffold_4G00310580 Rroxscaffold_4G00310620 Rroxscaffold_4G00315750 Rroxscaffold_4G00319620 Rroxscaffold_4G00319630 Rroxscaffold_4G00328870 Rroxscaffold_4G00328880 Rroxscaffold_4G00332120 Rroxscaffold_4G00332310 Rroxscaffold_5G00332660 Rroxscaffold_5G00332710 Rroxscaffold_5G00332970 Rroxscaffold_5G00344920 Rroxscaffold_5G00345540 Rroxscaffold_5G00346760 Rroxscaffold_5G00346770 Rroxscaffold_5G00347420 Rroxscaffold_5G00350360 Rroxscaffold_5G00350370 Rroxscaffold_5G00354490 Rroxscaffold_5G00370760 Rroxscaffold_5G00370770 Rroxscaffold_5G00374010 Rroxscaffold_5G00374020 Rroxscaffold_5G00374490 Rroxscaffold_5G00374510 Rroxscaffold_5G00387640 Rroxscaffold_5G00387650 Rroxscaffold_6G00387870 Rroxscaffold_6G00388560 Rroxscaffold_6G00388570 Rroxscaffold_6G00388670 Rroxscaffold_6G00388680 Rroxscaffold_6G00391960 Rroxscaffold_6G00393010 Rroxscaffold_6G00395010 Rroxscaffold_6G00395020 Rroxscaffold_6G00397990 Rroxscaffold_6G00401460 Rroxscaffold_6G00407850 Rroxscaffold_6G00423090 Rroxscaffold_6G00423100 Rroxscaffold_6G00423110 Rroxscaffold_7G00165960 Rroxscaffold_7G00165970 Rroxscaffold_7G00176270 Rroxscaffold_7G00176280 Rroxscaffold_7G00176600 Rroxscaffold_7G00176610 Rroxscaffold_7G00176620 Rroxscaffold_7G00176660 Rroxscaffold_7G00195710
rosa_rugosa Rorug03G0209000 Rorug05G0468000 Rorug05G0468000
rosa_samantha Rh3AG250900 Rh3AG257700 Rh3BG294700 Rh3CG284700 Rh3CG284800 Rh3DG280200 Rh3DG280300 Rh3DG280500 Rh3DG287600 Rh3DG287700 Rh4BG408500 Rh4DG402700 Rh6CG194400 Rh6CG194600 Rh6DG186400 Rh6DG186500 Rh7AG218100 Rh7AG278800 Rh7BG224200 Rh7CG231300 Rh7CG231400 Rh7DG225400
rosa_wichuraiana Rw3G022640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1545
Acc36I ACCTGC 1 cut(s) 492
AccB1I GGYRCC 1 cut(s) 437
AccBSI CCGCTC 3 cut(s) 581, 599, 1390
AccI GTMKAC 3 cut(s) 343, 473, 950
AccII CGCG 9 cut(s) 18, 24, 137, 196, 198, 703, 735, 970, 1482
AccIII TCCGGA 2 cut(s) 506, 1496
AclWI GGATC 7 cut(s) 512, 525, 686, 773, 873, 1233, 1312
AcoI YGGCCR 4 cut(s) 19, 1005, 1103, 1697
AcvI CACGTG 1 cut(s) 8
AcyI GRCGYC 2 cut(s) 602, 947
AfiI CCNNNNNNNGG 6 cut(s) 93, 702, 907, 1048, 1197, 1695
AgeI ACCGGT 1 cut(s) 1488
AgsI TTSAA 2 cut(s) 351, 1561
AhdI GACNNNNNGTC 1 cut(s) 1492
AhlI ACTAGT 1 cut(s) 617
AjnI CCWGG 1 cut(s) 872
AjuI GAANNNNNNNTTGG 2 cut(s) 657, 689
AloI GAACNNNNNNTCC 2 cut(s) 22, 54
AluBI AGCT 7 cut(s) 166, 189, 784, 982, 1001, 1186, 1217
AluI AGCT 7 cut(s) 166, 189, 784, 982, 1001, 1186, 1217
Alw21I GWGCWC 7 cut(s) 191, 625, 631, 796, 984, 1120, 1557
Alw26I GTCTC 2 cut(s) 703, 1163
AlwI GGATC 7 cut(s) 512, 525, 686, 773, 873, 1233, 1312
Ama87I CYCGRG 6 cut(s) 45, 147, 218, 901, 1089, 1365
Aor13HI TCCGGA 2 cut(s) 506, 1496
ApaI GGGCCC 1 cut(s) 1398
ApeKI GCWGC 2 cut(s) 883, 1327
AsiGI ACCGGT 1 cut(s) 1488
AspA2I CCTAGG 1 cut(s) 170
AspLEI GCGC 5 cut(s) 198, 735, 970, 1332, 1546
AsuC2I CCSGG 8 cut(s) 148, 149, 522, 635, 863, 928, 1322, 1696
AsuHPI GGTGA 7 cut(s) 307, 524, 536, 689, 1520, 1654, 1672
AvaI CYCGRG 6 cut(s) 45, 147, 218, 901, 1089, 1365
AvaII GGWCC 5 cut(s) 115, 504, 716, 1499, 1593
AvrII CCTAGG 1 cut(s) 170
AxyI CCTNAGG 1 cut(s) 541
BaeGI GKGCMC 1 cut(s) 1398
BamHI GGATCC 1 cut(s) 517
BanI GGYRCC 1 cut(s) 437
BanII GRGCYC 3 cut(s) 191, 984, 1398
BauI CACGAG 4 cut(s) 242, 534, 624, 769
BbrPI CACGTG 1 cut(s) 8
Bbv12I GWGCWC 7 cut(s) 191, 625, 631, 796, 984, 1120, 1557
BbvI GCAGC 2 cut(s) 895, 1339
BceAI ACGGC 2 cut(s) 380, 1268
BcgI CGANNNNNNTGC 4 cut(s) 437, 471, 602, 636
BciT130I CCWGG 1 cut(s) 874
BcnI CCSGG 8 cut(s) 148, 149, 522, 635, 863, 928, 1322, 1696
BcoDI GTCTC 2 cut(s) 703, 1163
BcuI ACTAGT 1 cut(s) 617
BfaI CTAG 5 cut(s) 110, 171, 618, 1197, 1383
BfuAI ACCTGC 1 cut(s) 492
BglII AGATCT 2 cut(s) 565, 1633
BlnI CCTAGG 1 cut(s) 170
Bme1390I CCNGG 9 cut(s) 148, 149, 522, 635, 863, 874, 928, 1322, 1696
Bme18I GGWCC 5 cut(s) 115, 504, 716, 1499, 1593
BmeRI GACNNNNNGTC 1 cut(s) 1492
BmeT110I CYCGRG 6 cut(s) 45, 147, 218, 901, 1089, 1365
BmiI GGNNCC 8 cut(s) 40, 61, 133, 439, 519, 1029, 1395, 1396
BmrFI CCNGG 9 cut(s) 148, 149, 522, 635, 863, 874, 928, 1322, 1696
BmsI GCATC 7 cut(s) 382, 472, 633, 976, 1183, 1341, 1677
BplI GAGNNNNNCTC 4 cut(s) 26, 58, 1012, 1044
BpuEI CTTGAG 1 cut(s) 462
BpuMI CCSGG 8 cut(s) 148, 149, 522, 635, 863, 928, 1322, 1696
BsaAI YACGTR 2 cut(s) 8, 954
BsaBI GATNNNNATC 2 cut(s) 570, 1632
BsaHI GRCGYC 2 cut(s) 602, 947
BsaWI WCCGGW 4 cut(s) 86, 506, 1488, 1496
BsaXI ACNNNNNCTCC 4 cut(s) 22, 52, 1623, 1653
Bsc4I CCNNNNNNNGG 6 cut(s) 93, 702, 907, 1048, 1197, 1695
Bse118I RCCGGY 5 cut(s) 414, 434, 724, 940, 1488
Bse21I CCTNAGG 1 cut(s) 541
Bse3DI GCAATG 1 cut(s) 1689
Bse8I GATNNNNATC 2 cut(s) 570, 1632
BseAI TCCGGA 2 cut(s) 506, 1496
BseBI CCWGG 1 cut(s) 874
BseGI GGATG 5 cut(s) 324, 648, 783, 901, 1434
BseJI GATNNNNATC 2 cut(s) 570, 1632
BseLI CCNNNNNNNGG 6 cut(s) 93, 702, 907, 1048, 1197, 1695
BseMI GCAATG 1 cut(s) 1689
BseMII CTCAG 1 cut(s) 555
BseSI GKGCMC 1 cut(s) 1398
BseX3I CGGCCG 1 cut(s) 19
BseXI GCAGC 2 cut(s) 895, 1339
Bsh1236I CGCG 9 cut(s) 18, 24, 137, 196, 198, 703, 735, 970, 1482
Bsh1285I CGRYCG 4 cut(s) 22, 932, 1124, 1489
BshNI GGYRCC 1 cut(s) 437
BshTI ACCGGT 1 cut(s) 1488
BsiEI CGRYCG 4 cut(s) 22, 932, 1124, 1489
BsiHKAI GWGCWC 7 cut(s) 191, 625, 631, 796, 984, 1120, 1557
BsiHKCI CYCGRG 6 cut(s) 45, 147, 218, 901, 1089, 1365
BslFI GGGAC 2 cut(s) 225, 1193
BslI CCNNNNNNNGG 6 cut(s) 93, 702, 907, 1048, 1197, 1695
BsmAI GTCTC 2 cut(s) 703, 1163
BsmBI CGTCTC 2 cut(s) 703, 1163
BsmFI GGGAC 2 cut(s) 225, 1193
BsoBI CYCGRG 6 cut(s) 45, 147, 218, 901, 1089, 1365
Bsp120I GGGCCC 1 cut(s) 1394
Bsp1286I GDGCHC 8 cut(s) 191, 625, 631, 796, 984, 1120, 1398, 1557
Bsp13I TCCGGA 2 cut(s) 506, 1496
BspCNI CTCAG 1 cut(s) 554
BspEI TCCGGA 2 cut(s) 506, 1496
BspFNI CGCG 9 cut(s) 18, 24, 137, 196, 198, 703, 735, 970, 1482
BspLI GGNNCC 8 cut(s) 40, 61, 133, 439, 519, 1029, 1395, 1396
BspMI ACCTGC 1 cut(s) 492
BspPI GGATC 7 cut(s) 512, 525, 686, 773, 873, 1233, 1312
BspQI GCTCTTC 1 cut(s) 849
BspT107I GGYRCC 1 cut(s) 437
BsrBI CCGCTC 3 cut(s) 581, 599, 1390
BsrDI GCAATG 1 cut(s) 1689
BsrFI RCCGGY 5 cut(s) 414, 434, 724, 940, 1488
BssAI RCCGGY 5 cut(s) 414, 434, 724, 940, 1488
BssNI GRCGYC 2 cut(s) 602, 947
BssSI CACGAG 4 cut(s) 242, 534, 624, 769
BssT1I CCWWGG 6 cut(s) 170, 312, 719, 1014, 1191, 1589
Bst2BI CACGAG 4 cut(s) 242, 534, 624, 769
Bst2UI CCWGG 1 cut(s) 874
Bst4CI ACNGT 4 cut(s) 122, 554, 670, 1115
Bst6I CTCTTC 1 cut(s) 849
BstACI GRCGYC 2 cut(s) 602, 947
BstAPI GCANNNNNTGC 1 cut(s) 1552
BstBAI YACGTR 2 cut(s) 8, 954
BstDEI CTNAG 2 cut(s) 541, 1404
BstDSI CCRYGG 8 cut(s) 16, 22, 67, 118, 135, 550, 1044, 1398
BstF5I GGATG 5 cut(s) 324, 648, 783, 901, 1434
BstFNI CGCG 9 cut(s) 18, 24, 137, 196, 198, 703, 735, 970, 1482
BstHHI GCGC 5 cut(s) 198, 735, 970, 1332, 1546
BstMAI GTCTC 2 cut(s) 703, 1163
BstMCI CGRYCG 4 cut(s) 22, 932, 1124, 1489
BstMWI GCNNNNNNNGC 7 cut(s) 195, 498, 730, 833, 1409, 1552, 1700
BstNI CCWGG 1 cut(s) 874
BstNSI RCATGY 1 cut(s) 1344
BstSCI CCNGG 9 cut(s) 146, 147, 520, 633, 861, 872, 926, 1320, 1694
BstSLI GKGCMC 1 cut(s) 1398
BstUI CGCG 9 cut(s) 18, 24, 137, 196, 198, 703, 735, 970, 1482
BstV1I GCAGC 2 cut(s) 895, 1339
BstX2I RGATCY 4 cut(s) 517, 565, 865, 1633
BstXI CCANNNNNNTGG 1 cut(s) 1015
BstYI RGATCY 4 cut(s) 517, 565, 865, 1633
BstZI CGGCCG 1 cut(s) 19
Bsu36I CCTNAGG 1 cut(s) 541
BtgI CCRYGG 8 cut(s) 16, 22, 67, 118, 135, 550, 1044, 1398
BtgZI GCGATG 1 cut(s) 1654
BtsCI GGATG 5 cut(s) 324, 648, 783, 901, 1434
BtsIMutI CAGTG 1 cut(s) 1120
BveI ACCTGC 1 cut(s) 492
CciNI GCGGCCGC 1 cut(s) 19
CfoI GCGC 5 cut(s) 198, 735, 970, 1332, 1546
Cfr10I RCCGGY 5 cut(s) 414, 434, 724, 940, 1488
Cfr42I CCGCGG 3 cut(s) 19, 25, 138
Cfr9I CCCGGG 1 cut(s) 147
CseI GACGC 3 cut(s) 591, 936, 1180
CspAI ACCGGT 1 cut(s) 1488
CspCI CAANNNNNGTGG 2 cut(s) 708, 743
CviAII CATG 2 cut(s) 449, 1341
DdeI CTNAG 2 cut(s) 541, 1404
DriI GACNNNNNGTC 1 cut(s) 1492
EaeI YGGCCR 4 cut(s) 19, 1005, 1103, 1697
EagI CGGCCG 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 849
Eam1105I GACNNNNNGTC 1 cut(s) 1492
EarI CTCTTC 1 cut(s) 849
EciI GGCGGA 1 cut(s) 905
Ecl136II GAGCTC 2 cut(s) 189, 982
EclXI CGGCCG 1 cut(s) 19
Eco130I CCWWGG 6 cut(s) 170, 312, 719, 1014, 1191, 1589
Eco24I GRGCYC 3 cut(s) 191, 984, 1398
Eco32I GATATC 1 cut(s) 1362
Eco47I GGWCC 5 cut(s) 115, 504, 716, 1499, 1593
Eco52I CGGCCG 1 cut(s) 19
Eco53kI GAGCTC 2 cut(s) 189, 982
Eco72I CACGTG 1 cut(s) 8
Eco81I CCTNAGG 1 cut(s) 541
Eco88I CYCGRG 6 cut(s) 45, 147, 218, 901, 1089, 1365
EcoICRI GAGCTC 2 cut(s) 189, 982
EcoO109I RGGNCCY 1 cut(s) 1394
EcoRII CCWGG 1 cut(s) 872
EcoRV GATATC 1 cut(s) 1362
EcoT14I CCWWGG 6 cut(s) 170, 312, 719, 1014, 1191, 1589
EcoT38I GRGCYC 3 cut(s) 191, 984, 1398
ErhI CCWWGG 6 cut(s) 170, 312, 719, 1014, 1191, 1589
Esp3I CGTCTC 2 cut(s) 703, 1163
FaeI CATG 2 cut(s) 452, 1344
FaiI YATR 9 cut(s) 355, 450, 743, 803, 1161, 1214, 1254, 1342, 1648
FaqI GGGAC 2 cut(s) 225, 1193
FatI CATG 2 cut(s) 448, 1340
FauI CCCGC 7 cut(s) 130, 142, 411, 696, 1383, 1609, 1684
FblI GTMKAC 3 cut(s) 343, 473, 950
FokI GGATG 5 cut(s) 331, 655, 790, 908, 1441
FriOI GRGCYC 3 cut(s) 191, 984, 1398
FspBI CTAG 5 cut(s) 110, 171, 618, 1197, 1383
FspI TGCGCA 1 cut(s) 1545
GlaI GCGC 5 cut(s) 197, 734, 969, 1331, 1545
HgaI GACGC 3 cut(s) 591, 936, 1180
HhaI GCGC 5 cut(s) 198, 735, 970, 1332, 1546
Hin1I GRCGYC 2 cut(s) 602, 947
Hin1II CATG 2 cut(s) 452, 1344
Hin6I GCGC 5 cut(s) 196, 733, 968, 1330, 1544
HinP1I GCGC 5 cut(s) 196, 733, 968, 1330, 1544
HincII GTYRAC 1 cut(s) 474
HindII GTYRAC 1 cut(s) 474
HinfI GANTC 8 cut(s) 368, 470, 475, 546, 992, 1087, 1466, 1516
HphI GGTGA 7 cut(s) 307, 524, 536, 689, 1520, 1654, 1672
Hpy166II GTNNAC 7 cut(s) 118, 344, 474, 550, 716, 951, 957
Hpy188I TCNGA 4 cut(s) 254, 849, 977, 1337
Hpy8I GTNNAC 7 cut(s) 118, 344, 474, 550, 716, 951, 957
Hpy99I CGWCG 4 cut(s) 607, 610, 1289, 1487
HpyAV CCTTC 5 cut(s) 50, 755, 1089, 1258, 1367
HpyCH4III ACNGT 4 cut(s) 122, 554, 670, 1115
HpyCH4IV ACGT 2 cut(s) 7, 953
HpyCH4V TGCA 3 cut(s) 1146, 1256, 1419
HpyF10VI GCNNNNNNNGC 7 cut(s) 195, 498, 730, 833, 1409, 1552, 1700
HpyF3I CTNAG 2 cut(s) 541, 1404
HpySE526I ACGT 2 cut(s) 7, 953
Hsp92I GRCGYC 2 cut(s) 602, 947
Hsp92II CATG 2 cut(s) 452, 1344
HspAI GCGC 5 cut(s) 196, 733, 968, 1330, 1544
Kpn2I TCCGGA 2 cut(s) 506, 1496
KroI GCCGGC 1 cut(s) 940
KroNI GCCGGC 1 cut(s) 942
KspI CCGCGG 3 cut(s) 19, 25, 138
LguI GCTCTTC 1 cut(s) 849
Lsp1109I GCAGC 2 cut(s) 895, 1339
LweI GCATC 7 cut(s) 382, 472, 633, 976, 1183, 1341, 1677
MaeI CTAG 5 cut(s) 110, 171, 618, 1197, 1383
MaeII ACGT 2 cut(s) 7, 953
MbiI CCGCTC 3 cut(s) 581, 599, 1390
MboII GAAGA 3 cut(s) 440, 836, 1250
MflI RGATCY 4 cut(s) 517, 565, 865, 1633
MhlI GDGCHC 8 cut(s) 191, 625, 631, 796, 984, 1120, 1398, 1557
MluCI AATT 4 cut(s) 658, 753, 1129, 1547
MlyI GAGTC 8 cut(s) 377, 469, 479, 555, 1001, 1081, 1475, 1510
MmeI TCCRAC 2 cut(s) 565, 1203
MroI TCCGGA 2 cut(s) 506, 1496
MroNI GCCGGC 1 cut(s) 940
MseI TTAA 3 cut(s) 921, 1472, 1717
MspA1I CMGCKG 3 cut(s) 18, 24, 137
MspR9I CCNGG 9 cut(s) 148, 149, 522, 635, 863, 874, 928, 1322, 1696
MvaI CCWGG 1 cut(s) 874
MvnI CGCG 9 cut(s) 18, 24, 137, 196, 198, 703, 735, 970, 1482
MwoI GCNNNNNNNGC 7 cut(s) 195, 498, 730, 833, 1409, 1552, 1700
NaeI GCCGGC 1 cut(s) 942
NciI CCSGG 8 cut(s) 148, 149, 522, 635, 863, 928, 1322, 1696
NgoMIV GCCGGC 1 cut(s) 940
NlaIII CATG 2 cut(s) 452, 1344
NlaIV GGNNCC 8 cut(s) 40, 61, 133, 439, 519, 1029, 1395, 1396
NotI GCGGCCGC 1 cut(s) 19
NsbI TGCGCA 1 cut(s) 1545
NspI RCATGY 1 cut(s) 1344
PaeI GCATGC 1 cut(s) 1344
PaeR7I CTCGAG 2 cut(s) 45, 1365
PciSI GCTCTTC 1 cut(s) 849
PcsI WCGNNNNNNNCGW 1 cut(s) 1225
PdiI GCCGGC 1 cut(s) 942
PfoI TCCNGGA 1 cut(s) 1320
PinAI ACCGGT 1 cut(s) 1488
Ple19I CGATCG 1 cut(s) 1124
PleI GAGTC 8 cut(s) 376, 469, 478, 554, 1000, 1081, 1474, 1510
PmaCI CACGTG 1 cut(s) 8
PmlI CACGTG 1 cut(s) 8
PpsI GAGTC 8 cut(s) 376, 469, 478, 554, 1000, 1081, 1474, 1510
Ppu21I YACGTR 2 cut(s) 8, 954
Psp124BI GAGCTC 2 cut(s) 191, 984
Psp6I CCWGG 1 cut(s) 872
PspCI CACGTG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 872
PspN4I GGNNCC 8 cut(s) 40, 61, 133, 439, 519, 1029, 1395, 1396
PspOMI GGGCCC 1 cut(s) 1394
PsuI RGATCY 4 cut(s) 517, 565, 865, 1633
PvuI CGATCG 1 cut(s) 1124
SacI GAGCTC 2 cut(s) 191, 984
SacII CCGCGG 3 cut(s) 19, 25, 138
SalI GTCGAC 1 cut(s) 472
SapI GCTCTTC 1 cut(s) 849
SaqAI TTAA 3 cut(s) 921, 1472, 1717
SchI GAGTC 8 cut(s) 377, 469, 479, 555, 1001, 1081, 1475, 1510
ScrFI CCNGG 9 cut(s) 148, 149, 522, 635, 863, 874, 928, 1322, 1696
SduI GDGCHC 8 cut(s) 191, 625, 631, 796, 984, 1120, 1398, 1557
SfaNI GCATC 7 cut(s) 382, 472, 633, 976, 1183, 1341, 1677
Sfr274I CTCGAG 2 cut(s) 45, 1365
Sfr303I CCGCGG 3 cut(s) 19, 25, 138
SgrBI CCGCGG 3 cut(s) 19, 25, 138
SinI GGWCC 5 cut(s) 115, 504, 716, 1499, 1593
SlaI CTCGAG 2 cut(s) 45, 1365
SmaI CCCGGG 1 cut(s) 149
SmlI CTYRAG 3 cut(s) 45, 477, 1365
SmoI CTYRAG 3 cut(s) 45, 477, 1365
SpeI ACTAGT 1 cut(s) 617
SphI GCATGC 1 cut(s) 1344
Sse9I AATT 4 cut(s) 658, 753, 1129, 1547
SspMI CTAG 5 cut(s) 110, 171, 618, 1197, 1383
SstI GAGCTC 2 cut(s) 191, 984
StyD4I CCNGG 9 cut(s) 146, 147, 520, 633, 861, 872, 926, 1320, 1694
StyI CCWWGG 6 cut(s) 170, 312, 719, 1014, 1191, 1589
TaaI ACNGT 4 cut(s) 122, 554, 670, 1115
TaiI ACGT 2 cut(s) 10, 956
TasI AATT 4 cut(s) 658, 753, 1129, 1547
Tru1I TTAA 3 cut(s) 921, 1472, 1717
Tru9I TTAA 3 cut(s) 921, 1472, 1717
TscAI CASTG 1 cut(s) 1120
TseI GCWGC 2 cut(s) 883, 1327
TspDTI ATGAA 3 cut(s) 227, 774, 1514
TspGWI ACGGA 1 cut(s) 327
TspMI CCCGGG 1 cut(s) 147
TspRI CASTG 1 cut(s) 1120
VpaK11BI GGWCC 5 cut(s) 115, 504, 716, 1499, 1593
XceI RCATGY 1 cut(s) 1344
XcmI CCANNNNNNNNNTGG 2 cut(s) 125, 557
XhoI CTCGAG 2 cut(s) 45, 1365
XmaI CCCGGG 1 cut(s) 147
XmaJI CCTAGG 1 cut(s) 170
XmiI GTMKAC 3 cut(s) 343, 473, 950
XspI CTAG 5 cut(s) 110, 171, 618, 1197, 1383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.