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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 359 |
| AccII | CGCG | 7 cut(s) | 3, 265, 292, 326, 328, 433, 576 |
| AciI | CCGC | 3 cut(s) | 32, 388, 406 |
| AcoI | YGGCCR | 1 cut(s) | 97 |
| AcuI | CTGAAG | 1 cut(s) | 444 |
| AcvI | CACGTG | 1 cut(s) | 607 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 209, 373, 387, 541 |
| AflIII | ACRYGT | 1 cut(s) | 137 |
| AjnI | CCWGG | 3 cut(s) | 99, 333, 435 |
| AluBI | AGCT | 3 cut(s) | 187, 512, 580 |
| AluI | AGCT | 3 cut(s) | 187, 512, 580 |
| Alw21I | GWGCWC | 1 cut(s) | 145 |
| Alw26I | GTCTC | 4 cut(s) | 53, 249, 326, 454 |
| Ama87I | CYCGRG | 2 cut(s) | 123, 268 |
| AoxI | GGCC | 3 cut(s) | 65, 97, 601 |
| ApeKI | GCWGC | 2 cut(s) | 184, 580 |
| AspLEI | GCGC | 4 cut(s) | 267, 328, 330, 435 |
| AspS9I | GGNCC | 3 cut(s) | 65, 90, 595 |
| AsuHPI | GGTGA | 2 cut(s) | 49, 68 |
| AvaI | CYCGRG | 2 cut(s) | 123, 268 |
| AvaII | GGWCC | 2 cut(s) | 90, 595 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 111, 144, 162, 195 |
| BalI | TGGCCA | 1 cut(s) | 99 |
| BanI | GGYRCC | 1 cut(s) | 359 |
| BbrPI | CACGTG | 1 cut(s) | 607 |
| Bbv12I | GWGCWC | 1 cut(s) | 145 |
| BbvI | GCAGC | 2 cut(s) | 196, 567 |
| BccI | CCATC | 3 cut(s) | 110, 350, 371 |
| BciT130I | CCWGG | 3 cut(s) | 101, 335, 437 |
| BcoDI | GTCTC | 4 cut(s) | 53, 249, 326, 454 |
| BfaI | CTAG | 1 cut(s) | 315 |
| BfmI | CTRYAG | 2 cut(s) | 539, 581 |
| BisI | GCNGC | 2 cut(s) | 185, 581 |
| BlsI | GCNGC | 2 cut(s) | 186, 582 |
| Bme1390I | CCNGG | 3 cut(s) | 101, 335, 437 |
| Bme18I | GGWCC | 2 cut(s) | 90, 595 |
| BmeT110I | CYCGRG | 2 cut(s) | 123, 268 |
| BmgT120I | GGNCC | 3 cut(s) | 65, 90, 595 |
| BmiI | GGNNCC | 3 cut(s) | 91, 121, 361 |
| BmrFI | CCNGG | 3 cut(s) | 101, 335, 437 |
| BmrI | ACTGGG | 1 cut(s) | 200 |
| BmsI | GCATC | 1 cut(s) | 544 |
| BmuI | ACTGGG | 1 cut(s) | 200 |
| Bpu10I | CCTNAGC | 2 cut(s) | 194, 453 |
| BpuEI | CTTGAG | 1 cut(s) | 65 |
| BsaAI | YACGTR | 2 cut(s) | 138, 607 |
| BsaI | GGTCTC | 2 cut(s) | 249, 326 |
| BsaJI | CCNNGG | 4 cut(s) | 333, 334, 436, 598 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 209, 373, 387, 541 |
| Bse118I | RCCGGY | 1 cut(s) | 67 |
| Bse1I | ACTGG | 1 cut(s) | 206 |
| BseBI | CCWGG | 3 cut(s) | 101, 335, 437 |
| BseDI | CCNNGG | 4 cut(s) | 333, 334, 436, 598 |
| BseGI | GGATG | 3 cut(s) | 121, 363, 559 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 209, 373, 387, 541 |
| BseMII | CTCAG | 4 cut(s) | 208, 243, 467, 492 |
| BseNI | ACTGG | 1 cut(s) | 206 |
| BsePI | GCGCGC | 1 cut(s) | 326 |
| BseXI | GCAGC | 2 cut(s) | 196, 567 |
| Bsh1236I | CGCG | 7 cut(s) | 3, 265, 292, 326, 328, 433, 576 |
| BshFI | GGCC | 3 cut(s) | 67, 99, 603 |
| BshNI | GGYRCC | 1 cut(s) | 359 |
| BsiHKAI | GWGCWC | 1 cut(s) | 145 |
| BsiHKCI | CYCGRG | 2 cut(s) | 123, 268 |
| BsiSI | CCGG | 1 cut(s) | 68 |
| BslFI | GGGAC | 3 cut(s) | 103, 186, 299 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 209, 373, 387, 541 |
| BsmAI | GTCTC | 4 cut(s) | 53, 249, 326, 454 |
| BsmFI | GGGAC | 3 cut(s) | 103, 186, 299 |
| BsmI | GAATGC | 1 cut(s) | 617 |
| BsnI | GGCC | 3 cut(s) | 67, 99, 603 |
| Bso31I | GGTCTC | 2 cut(s) | 249, 326 |
| BsoBI | CYCGRG | 2 cut(s) | 123, 268 |
| Bsp1286I | GDGCHC | 1 cut(s) | 145 |
| Bsp143I | GATC | 1 cut(s) | 520 |
| BspACI | CCGC | 3 cut(s) | 32, 388, 406 |
| BspANI | GGCC | 3 cut(s) | 67, 99, 603 |
| BspCNI | CTCAG | 4 cut(s) | 207, 244, 466, 493 |
| BspFNI | CGCG | 7 cut(s) | 3, 265, 292, 326, 328, 433, 576 |
| BspLI | GGNNCC | 3 cut(s) | 91, 121, 361 |
| BspMAI | CTGCAG | 2 cut(s) | 543, 585 |
| BspT107I | GGYRCC | 1 cut(s) | 359 |
| BspTNI | GGTCTC | 2 cut(s) | 249, 326 |
| BsrFI | RCCGGY | 1 cut(s) | 67 |
| BsrI | ACTGG | 1 cut(s) | 206 |
| BssAI | RCCGGY | 1 cut(s) | 67 |
| BssECI | CCNNGG | 4 cut(s) | 333, 334, 436, 598 |
| BssHII | GCGCGC | 1 cut(s) | 326 |
| BssMI | GATC | 1 cut(s) | 520 |
| BssT1I | CCWWGG | 1 cut(s) | 598 |
| Bst2UI | CCWGG | 3 cut(s) | 101, 335, 437 |
| Bst4CI | ACNGT | 2 cut(s) | 16, 178 |
| BstBAI | YACGTR | 2 cut(s) | 138, 607 |
| BstC8I | GCNNGC | 5 cut(s) | 145, 328, 570, 574, 578 |
| BstDEI | CTNAG | 5 cut(s) | 165, 194, 252, 453, 501 |
| BstEII | GGTNACC | 1 cut(s) | 37 |
| BstF5I | GGATG | 3 cut(s) | 121, 363, 559 |
| BstFNI | CGCG | 7 cut(s) | 3, 265, 292, 326, 328, 433, 576 |
| BstHHI | GCGC | 4 cut(s) | 267, 328, 330, 435 |
| BstKTI | GATC | 1 cut(s) | 523 |
| BstMAI | GTCTC | 4 cut(s) | 53, 249, 326, 454 |
| BstMBI | GATC | 1 cut(s) | 520 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 105, 190, 336 |
| BstNI | CCWGG | 3 cut(s) | 101, 335, 437 |
| BstPI | GGTNACC | 1 cut(s) | 37 |
| BstSCI | CCNGG | 3 cut(s) | 99, 333, 435 |
| BstSFI | CTRYAG | 2 cut(s) | 539, 581 |
| BstUI | CGCG | 7 cut(s) | 3, 265, 292, 326, 328, 433, 576 |
| BstV1I | GCAGC | 2 cut(s) | 196, 567 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 53 |
| BsuRI | GGCC | 3 cut(s) | 67, 99, 603 |
| BtgZI | GCGATG | 1 cut(s) | 383 |
| BtsCI | GGATG | 3 cut(s) | 121, 363, 559 |
| BtsIMutI | CAGTG | 2 cut(s) | 147, 351 |
| Cac8I | GCNNGC | 5 cut(s) | 145, 328, 570, 574, 578 |
| CfoI | GCGC | 4 cut(s) | 267, 328, 330, 435 |
| Cfr10I | RCCGGY | 1 cut(s) | 67 |
| Cfr13I | GGNCC | 3 cut(s) | 65, 90, 595 |
| CviAII | CATG | 2 cut(s) | 481, 491 |
| DdeI | CTNAG | 5 cut(s) | 165, 194, 252, 453, 501 |
| DpnI | GATC | 1 cut(s) | 522 |
| DpnII | GATC | 1 cut(s) | 520 |
| EaeI | YGGCCR | 1 cut(s) | 97 |
| EciI | GGCGGA | 1 cut(s) | 47 |
| Eco130I | CCWWGG | 1 cut(s) | 598 |
| Eco31I | GGTCTC | 2 cut(s) | 249, 326 |
| Eco47I | GGWCC | 2 cut(s) | 90, 595 |
| Eco57I | CTGAAG | 1 cut(s) | 444 |
| Eco72I | CACGTG | 1 cut(s) | 607 |
| Eco88I | CYCGRG | 2 cut(s) | 123, 268 |
| Eco91I | GGTNACC | 1 cut(s) | 37 |
| EcoO109I | RGGNCCY | 1 cut(s) | 90 |
| EcoO65I | GGTNACC | 1 cut(s) | 37 |
| EcoRII | CCWGG | 3 cut(s) | 99, 333, 435 |
| EcoT14I | CCWWGG | 1 cut(s) | 598 |
| ErhI | CCWWGG | 1 cut(s) | 598 |
| FaeI | CATG | 2 cut(s) | 484, 494 |
| FaiI | YATR | 6 cut(s) | 96, 372, 374, 482, 492, 623 |
| FaqI | GGGAC | 3 cut(s) | 103, 186, 299 |
| FatI | CATG | 2 cut(s) | 480, 490 |
| FauNDI | CATATG | 1 cut(s) | 372 |
| Fnu4HI | GCNGC | 2 cut(s) | 185, 581 |
| FokI | GGATG | 3 cut(s) | 128, 350, 566 |
| Fsp4HI | GCNGC | 2 cut(s) | 185, 581 |
| FspBI | CTAG | 1 cut(s) | 315 |
| GlaI | GCGC | 4 cut(s) | 266, 327, 329, 434 |
| GluI | GCNGC | 2 cut(s) | 185, 581 |
| HaeIII | GGCC | 3 cut(s) | 67, 99, 603 |
| HapII | CCGG | 1 cut(s) | 68 |
| HhaI | GCGC | 4 cut(s) | 267, 328, 330, 435 |
| Hin1II | CATG | 2 cut(s) | 484, 494 |
| Hin6I | GCGC | 4 cut(s) | 265, 326, 328, 433 |
| HinP1I | GCGC | 4 cut(s) | 265, 326, 328, 433 |
| HinfI | GANTC | 4 cut(s) | 199, 287, 348, 428 |
| HpaII | CCGG | 1 cut(s) | 68 |
| HphI | GGTGA | 2 cut(s) | 49, 68 |
| Hpy166II | GTNNAC | 1 cut(s) | 478 |
| Hpy188III | TCNNGA | 5 cut(s) | 196, 270, 446, 455, 524 |
| Hpy8I | GTNNAC | 1 cut(s) | 478 |
| HpyAV | CCTTC | 1 cut(s) | 377 |
| HpyCH4III | ACNGT | 2 cut(s) | 16, 178 |
| HpyCH4IV | ACGT | 2 cut(s) | 137, 606 |
| HpyCH4V | TGCA | 4 cut(s) | 416, 541, 583, 590 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 105, 190, 336 |
| HpyF3I | CTNAG | 5 cut(s) | 165, 194, 252, 453, 501 |
| HpySE526I | ACGT | 2 cut(s) | 137, 606 |
| Hsp92II | CATG | 2 cut(s) | 484, 494 |
| HspAI | GCGC | 4 cut(s) | 265, 326, 328, 433 |
| Kzo9I | GATC | 1 cut(s) | 520 |
| LmnI | GCTCC | 1 cut(s) | 565 |
| Lsp1109I | GCAGC | 2 cut(s) | 196, 567 |
| LweI | GCATC | 1 cut(s) | 544 |
| MaeI | CTAG | 1 cut(s) | 315 |
| MaeII | ACGT | 2 cut(s) | 137, 606 |
| MaeIII | GTNAC | 2 cut(s) | 37, 349 |
| MalI | GATC | 1 cut(s) | 522 |
| MboI | GATC | 1 cut(s) | 520 |
| MboII | GAAGA | 1 cut(s) | 437 |
| MhlI | GDGCHC | 1 cut(s) | 145 |
| MlsI | TGGCCA | 1 cut(s) | 99 |
| MluCI | AATT | 2 cut(s) | 391, 484 |
| MluNI | TGGCCA | 1 cut(s) | 99 |
| MlyI | GAGTC | 3 cut(s) | 208, 281, 357 |
| MmeI | TCCRAC | 1 cut(s) | 531 |
| Mox20I | TGGCCA | 1 cut(s) | 99 |
| MscI | TGGCCA | 1 cut(s) | 99 |
| Msp20I | TGGCCA | 1 cut(s) | 99 |
| MspI | CCGG | 1 cut(s) | 68 |
| MspR9I | CCNGG | 3 cut(s) | 101, 335, 437 |
| Mva1269I | GAATGC | 1 cut(s) | 617 |
| MvaI | CCWGG | 3 cut(s) | 101, 335, 437 |
| MvnI | CGCG | 7 cut(s) | 3, 265, 292, 326, 328, 433, 576 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 105, 190, 336 |
| NdeI | CATATG | 1 cut(s) | 372 |
| NdeII | GATC | 1 cut(s) | 520 |
| NlaIII | CATG | 2 cut(s) | 484, 494 |
| NlaIV | GGNNCC | 3 cut(s) | 91, 121, 361 |
| NmuCI | GTSAC | 2 cut(s) | 37, 349 |
| PaeR7I | CTCGAG | 1 cut(s) | 268 |
| PasI | CCCWGGG | 1 cut(s) | 334 |
| PauI | GCGCGC | 1 cut(s) | 326 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 296, 612 |
| PctI | GAATGC | 1 cut(s) | 617 |
| PfeI | GAWTC | 1 cut(s) | 428 |
| PflFI | GACNNNGTC | 1 cut(s) | 155 |
| PkrI | GCNGC | 2 cut(s) | 186, 582 |
| PleI | GAGTC | 3 cut(s) | 207, 281, 356 |
| PmaCI | CACGTG | 1 cut(s) | 607 |
| PmlI | CACGTG | 1 cut(s) | 607 |
| PpsI | GAGTC | 3 cut(s) | 207, 281, 356 |
| Ppu21I | YACGTR | 2 cut(s) | 138, 607 |
| PpuMI | RGGWCCY | 1 cut(s) | 90 |
| Psp5II | RGGWCCY | 1 cut(s) | 90 |
| Psp6I | CCWGG | 3 cut(s) | 99, 333, 435 |
| PspCI | CACGTG | 1 cut(s) | 607 |
| PspEI | GGTNACC | 1 cut(s) | 37 |
| PspGI | CCWGG | 3 cut(s) | 99, 333, 435 |
| PspN4I | GGNNCC | 3 cut(s) | 91, 121, 361 |
| PspPI | GGNCC | 3 cut(s) | 65, 90, 595 |
| PspPPI | RGGWCCY | 1 cut(s) | 90 |
| PstI | CTGCAG | 2 cut(s) | 543, 585 |
| PsyI | GACNNNGTC | 1 cut(s) | 155 |
| PteI | GCGCGC | 1 cut(s) | 326 |
| SatI | GCNGC | 2 cut(s) | 185, 581 |
| Sau3AI | GATC | 1 cut(s) | 520 |
| Sau96I | GGNCC | 3 cut(s) | 65, 90, 595 |
| SchI | GAGTC | 3 cut(s) | 208, 281, 357 |
| ScrFI | CCNGG | 3 cut(s) | 101, 335, 437 |
| SduI | GDGCHC | 1 cut(s) | 145 |
| SfaNI | GCATC | 1 cut(s) | 544 |
| SfcI | CTRYAG | 2 cut(s) | 539, 581 |
| Sfr274I | CTCGAG | 1 cut(s) | 268 |
| SinI | GGWCC | 2 cut(s) | 90, 595 |
| SlaI | CTCGAG | 1 cut(s) | 268 |
| SmlI | CTYRAG | 2 cut(s) | 80, 268 |
| SmoI | CTYRAG | 2 cut(s) | 80, 268 |
| Sse9I | AATT | 2 cut(s) | 391, 484 |
| SsiI | CCGC | 3 cut(s) | 32, 388, 406 |
| SspMI | CTAG | 1 cut(s) | 315 |
| StyD4I | CCNGG | 3 cut(s) | 99, 333, 435 |
| StyI | CCWWGG | 1 cut(s) | 598 |
| TaaI | ACNGT | 2 cut(s) | 16, 178 |
| TaiI | ACGT | 2 cut(s) | 140, 609 |
| TaqI | TCGA | 3 cut(s) | 131, 222, 269 |
| TasI | AATT | 2 cut(s) | 391, 484 |
| TfiI | GAWTC | 1 cut(s) | 428 |
| TscAI | CASTG | 2 cut(s) | 154, 358 |
| TseFI | GTSAC | 2 cut(s) | 37, 349 |
| TseI | GCWGC | 2 cut(s) | 184, 580 |
| Tsp45I | GTSAC | 2 cut(s) | 37, 349 |
| TspDTI | ATGAA | 2 cut(s) | 359, 497 |
| TspRI | CASTG | 2 cut(s) | 154, 358 |
| Tth111I | GACNNNGTC | 1 cut(s) | 155 |
| VpaK11BI | GGWCC | 2 cut(s) | 90, 595 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 370 |
| XhoI | CTCGAG | 1 cut(s) | 268 |
| XspI | CTAG | 1 cut(s) | 315 |