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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 101 |
| AccII | CGCG | 3 cut(s) | 45, 124, 399 |
| AciI | CCGC | 9 cut(s) | 226, 238, 241, 245, 266, 326, 363, 366, 392 |
| AclWI | GGATC | 2 cut(s) | 127, 414 |
| AcoI | YGGCCR | 1 cut(s) | 153 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 115, 455 |
| AluBI | AGCT | 3 cut(s) | 306, 355, 468 |
| AluI | AGCT | 3 cut(s) | 306, 355, 468 |
| Alw21I | GWGCWC | 1 cut(s) | 151 |
| AlwI | GGATC | 2 cut(s) | 127, 414 |
| AoxI | GGCC | 5 cut(s) | 153, 178, 280, 296, 415 |
| ApeKI | GCWGC | 1 cut(s) | 235 |
| AspS9I | GGNCC | 4 cut(s) | 280, 328, 415, 446 |
| AsuC2I | CCSGG | 1 cut(s) | 419 |
| AvaII | GGWCC | 2 cut(s) | 328, 446 |
| BanI | GGYRCC | 1 cut(s) | 101 |
| BauI | CACGAG | 1 cut(s) | 256 |
| Bbv12I | GWGCWC | 1 cut(s) | 151 |
| BbvI | GCAGC | 1 cut(s) | 222 |
| BccI | CCATC | 4 cut(s) | 92, 113, 126, 245 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 35, 69 |
| BcnI | CCSGG | 1 cut(s) | 419 |
| BfaI | CTAG | 2 cut(s) | 410, 469 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 288 |
| BglII | AGATCT | 1 cut(s) | 14 |
| BisI | GCNGC | 4 cut(s) | 236, 239, 363, 366 |
| BlsI | GCNGC | 4 cut(s) | 237, 240, 364, 367 |
| Bme1390I | CCNGG | 1 cut(s) | 419 |
| Bme18I | GGWCC | 2 cut(s) | 328, 446 |
| BmgT120I | GGNCC | 4 cut(s) | 280, 328, 415, 446 |
| BmiI | GGNNCC | 3 cut(s) | 103, 281, 384 |
| BmrFI | CCNGG | 1 cut(s) | 419 |
| BmsI | GCATC | 2 cut(s) | 331, 403 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 367, 399 |
| Bpu10I | CCTNAGC | 1 cut(s) | 57 |
| BpuMI | CCSGG | 1 cut(s) | 419 |
| BsaJI | CCNNGG | 5 cut(s) | 181, 201, 283, 299, 369 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 115, 455 |
| Bse118I | RCCGGY | 1 cut(s) | 151 |
| BseDI | CCNNGG | 5 cut(s) | 181, 201, 283, 299, 369 |
| BseGI | GGATG | 4 cut(s) | 105, 137, 256, 465 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 115, 455 |
| BseRI | GAGGAG | 4 cut(s) | 141, 176, 187, 316 |
| BseXI | GCAGC | 1 cut(s) | 222 |
| Bsh1236I | CGCG | 3 cut(s) | 45, 124, 399 |
| BshFI | GGCC | 5 cut(s) | 155, 180, 282, 298, 417 |
| BshNI | GGYRCC | 1 cut(s) | 101 |
| BsiHKAI | GWGCWC | 1 cut(s) | 151 |
| BsiSI | CCGG | 2 cut(s) | 152, 418 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 115, 455 |
| BsnI | GGCC | 5 cut(s) | 155, 180, 282, 298, 417 |
| Bsp1286I | GDGCHC | 1 cut(s) | 151 |
| Bsp143I | GATC | 3 cut(s) | 14, 119, 406 |
| Bsp19I | CCATGG | 1 cut(s) | 369 |
| Bsp68I | TCGCGA | 1 cut(s) | 124 |
| BspACI | CCGC | 9 cut(s) | 226, 238, 241, 245, 266, 326, 363, 366, 392 |
| BspANI | GGCC | 5 cut(s) | 155, 180, 282, 298, 417 |
| BspFNI | CGCG | 3 cut(s) | 45, 124, 399 |
| BspLI | GGNNCC | 3 cut(s) | 103, 281, 384 |
| BspPI | GGATC | 2 cut(s) | 127, 414 |
| BspT107I | GGYRCC | 1 cut(s) | 101 |
| BsrFI | RCCGGY | 1 cut(s) | 151 |
| BssAI | RCCGGY | 1 cut(s) | 151 |
| BssECI | CCNNGG | 5 cut(s) | 181, 201, 283, 299, 369 |
| BssMI | GATC | 3 cut(s) | 14, 119, 406 |
| BssSI | CACGAG | 1 cut(s) | 256 |
| BssT1I | CCWWGG | 1 cut(s) | 369 |
| Bst2BI | CACGAG | 1 cut(s) | 256 |
| Bst4CI | ACNGT | 2 cut(s) | 287, 450 |
| BstC8I | GCNNGC | 3 cut(s) | 70, 147, 243 |
| BstDEI | CTNAG | 1 cut(s) | 57 |
| BstDSI | CCRYGG | 2 cut(s) | 283, 369 |
| BstF5I | GGATG | 4 cut(s) | 105, 137, 256, 465 |
| BstFNI | CGCG | 3 cut(s) | 45, 124, 399 |
| BstKTI | GATC | 3 cut(s) | 17, 122, 409 |
| BstMBI | GATC | 3 cut(s) | 14, 119, 406 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 186, 232, 288 |
| BstSCI | CCNGG | 1 cut(s) | 417 |
| BstUI | CGCG | 3 cut(s) | 45, 124, 399 |
| BstV1I | GCAGC | 1 cut(s) | 222 |
| BstX2I | RGATCY | 2 cut(s) | 14, 406 |
| BstYI | RGATCY | 2 cut(s) | 14, 406 |
| BsuRI | GGCC | 5 cut(s) | 155, 180, 282, 298, 417 |
| BtgI | CCRYGG | 2 cut(s) | 283, 369 |
| BtgZI | GCGATG | 2 cut(s) | 60, 380 |
| BtsCI | GGATG | 4 cut(s) | 105, 137, 256, 465 |
| BtuMI | TCGCGA | 1 cut(s) | 124 |
| Cac8I | GCNNGC | 3 cut(s) | 70, 147, 243 |
| Cfr10I | RCCGGY | 1 cut(s) | 151 |
| Cfr13I | GGNCC | 4 cut(s) | 280, 328, 415, 446 |
| CpoI | CGGWCCG | 1 cut(s) | 328 |
| CspI | CGGWCCG | 1 cut(s) | 328 |
| CviAII | CATG | 1 cut(s) | 370 |
| DdeI | CTNAG | 1 cut(s) | 57 |
| DpnI | GATC | 3 cut(s) | 16, 121, 408 |
| DpnII | GATC | 3 cut(s) | 14, 119, 406 |
| EaeI | YGGCCR | 1 cut(s) | 153 |
| EciI | GGCGGA | 1 cut(s) | 260 |
| Eco130I | CCWWGG | 1 cut(s) | 369 |
| Eco47I | GGWCC | 2 cut(s) | 328, 446 |
| EcoT14I | CCWWGG | 1 cut(s) | 369 |
| ErhI | CCWWGG | 1 cut(s) | 369 |
| FaeI | CATG | 1 cut(s) | 373 |
| FaiI | YATR | 4 cut(s) | 114, 116, 158, 371 |
| FatI | CATG | 1 cut(s) | 369 |
| FauI | CCCGC | 2 cut(s) | 219, 234 |
| FauNDI | CATATG | 1 cut(s) | 114 |
| Fnu4HI | GCNGC | 4 cut(s) | 236, 239, 363, 366 |
| FokI | GGATG | 3 cut(s) | 92, 144, 263 |
| Fsp4HI | GCNGC | 4 cut(s) | 236, 239, 363, 366 |
| FspBI | CTAG | 2 cut(s) | 410, 469 |
| GluI | GCNGC | 4 cut(s) | 236, 239, 363, 366 |
| HaeIII | GGCC | 5 cut(s) | 155, 180, 282, 298, 417 |
| HapII | CCGG | 2 cut(s) | 152, 418 |
| Hin1II | CATG | 1 cut(s) | 373 |
| HinfI | GANTC | 1 cut(s) | 427 |
| HpaII | CCGG | 2 cut(s) | 152, 418 |
| Hpy166II | GTNNAC | 4 cut(s) | 32, 41, 446, 453 |
| Hpy188I | TCNGA | 3 cut(s) | 202, 332, 352 |
| Hpy188III | TCNNGA | 3 cut(s) | 12, 123, 410 |
| Hpy8I | GTNNAC | 4 cut(s) | 32, 41, 446, 453 |
| Hpy99I | CGWCG | 2 cut(s) | 174, 177 |
| HpyAV | CCTTC | 2 cut(s) | 119, 224 |
| HpyCH4III | ACNGT | 2 cut(s) | 287, 450 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 186, 232, 288 |
| HpyF3I | CTNAG | 1 cut(s) | 57 |
| Hsp92II | CATG | 1 cut(s) | 373 |
| Kzo9I | GATC | 3 cut(s) | 14, 119, 406 |
| LmnI | GCTCC | 7 cut(s) | 142, 200, 268, 303, 352, 388, 465 |
| LpnPI | CCDG | 2 cut(s) | 165, 431 |
| Lsp1109I | GCAGC | 1 cut(s) | 222 |
| LweI | GCATC | 2 cut(s) | 331, 403 |
| MaeI | CTAG | 2 cut(s) | 410, 469 |
| MalI | GATC | 3 cut(s) | 16, 121, 408 |
| MboI | GATC | 3 cut(s) | 14, 119, 406 |
| MflI | RGATCY | 2 cut(s) | 14, 406 |
| MhlI | GDGCHC | 1 cut(s) | 151 |
| MmeI | TCCRAC | 1 cut(s) | 330 |
| MseI | TTAA | 1 cut(s) | 222 |
| MspI | CCGG | 2 cut(s) | 152, 418 |
| MspR9I | CCNGG | 1 cut(s) | 419 |
| MvnI | CGCG | 3 cut(s) | 45, 124, 399 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 186, 232, 288 |
| NciI | CCSGG | 1 cut(s) | 419 |
| NcoI | CCATGG | 1 cut(s) | 369 |
| NdeI | CATATG | 1 cut(s) | 114 |
| NdeII | GATC | 3 cut(s) | 14, 119, 406 |
| NlaIII | CATG | 1 cut(s) | 373 |
| NlaIV | GGNNCC | 3 cut(s) | 103, 281, 384 |
| NmeAIII | GCCGAG | 2 cut(s) | 206, 324 |
| NruI | TCGCGA | 1 cut(s) | 124 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 178 |
| PfeI | GAWTC | 1 cut(s) | 427 |
| PkrI | GCNGC | 4 cut(s) | 237, 240, 364, 367 |
| PspN4I | GGNNCC | 3 cut(s) | 103, 281, 384 |
| PspPI | GGNCC | 4 cut(s) | 280, 328, 415, 446 |
| PsuI | RGATCY | 2 cut(s) | 14, 406 |
| RruI | TCGCGA | 1 cut(s) | 124 |
| Rsr2I | CGGWCCG | 1 cut(s) | 328 |
| RsrII | CGGWCCG | 1 cut(s) | 328 |
| SaqAI | TTAA | 1 cut(s) | 222 |
| SatI | GCNGC | 4 cut(s) | 236, 239, 363, 366 |
| Sau3AI | GATC | 3 cut(s) | 14, 119, 406 |
| Sau96I | GGNCC | 4 cut(s) | 280, 328, 415, 446 |
| ScrFI | CCNGG | 1 cut(s) | 419 |
| SduI | GDGCHC | 1 cut(s) | 151 |
| SetI | ASST | 6 cut(s) | 31, 54, 308, 357, 445, 470 |
| SfaNI | GCATC | 2 cut(s) | 331, 403 |
| SinI | GGWCC | 2 cut(s) | 328, 446 |
| SmlI | CTYRAG | 1 cut(s) | 10 |
| SmoI | CTYRAG | 1 cut(s) | 10 |
| SsiI | CCGC | 9 cut(s) | 226, 238, 241, 245, 266, 326, 363, 366, 392 |
| SspMI | CTAG | 2 cut(s) | 410, 469 |
| StyD4I | CCNGG | 1 cut(s) | 417 |
| StyI | CCWWGG | 1 cut(s) | 369 |
| TaaI | ACNGT | 2 cut(s) | 287, 450 |
| TaqI | TCGA | 1 cut(s) | 175 |
| TauI | GCSGC | 3 cut(s) | 241, 365, 368 |
| TfiI | GAWTC | 1 cut(s) | 427 |
| Tru1I | TTAA | 1 cut(s) | 222 |
| Tru9I | TTAA | 1 cut(s) | 222 |
| TseI | GCWGC | 1 cut(s) | 235 |
| TspDTI | ATGAA | 1 cut(s) | 101 |
| TspGWI | ACGGA | 1 cut(s) | 231 |
| VpaK11BI | GGWCC | 2 cut(s) | 328, 446 |
| XbaI | TCTAGA | 1 cut(s) | 409 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 112, 376 |
| XspI | CTAG | 2 cut(s) | 410, 469 |