Rroxscaffold_2G00110710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000075
Physical Location & Seq
Reverse (-)
35195870 .. 35196569
700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00110710.1

Sequence Viewer

Length: 669 bp
ATGGTACGAAGGTTGTGGATCGGTCTAGGGCCGGGTTGGCGAGGGCGAGGAGCGCCGCAAGAATTGGAGAGGCAAGTCGGGGAACGCAATGCCGAGTTGGAGCTTAGTCTTGCTGCATTGGAGAGTTTGGCTCCTTATCCCGACCTCGTGGTGGAGTTGGAGGGGCAGGTTGGTATGCTTGCAAAAGGGAGCGGGCGAGAGGGAGCGAGAGATGGAGTGACTAAAGAGGAGTTAGCCGAGCAGCGGTCTCGGGCCGGTACCTTTTGCGGGGACTATATTCGCTTTGCGCGCCGTTCTTTGAGACATACTGCGGCAAACTCCATAAGGGCTAAGCAAGATGGCGTGGATAAGGCGGTGGATCTCTACCTCGGTCGAGATCATTTTCAAAAGAAGATGAACAAGGCTTTCTCGGATGGGGCCTTACACTCAATCCGAGACGGTATCGCCGCGGCTTGGATTGACCGGGAGAAGATGGTGCAAGATATGCGAGGCCAAGCGGGCGGCGAGATCGCAAGCCGATCTTTGCAAGTGGTGGTCGAGGTGCGGGATCGTGATCTGGAGCGAGGGCGTGCAGGAGCATGTATCGAGCCAAGGCGGCGATTGCGAGACGAGAGGGTGCTACGGTGGCGGGGAGGCCCACGTGGATATCGAGGGCGAGGTGCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.82

Weight (kDa)

10.23

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000075)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0348161 RchiOBHm_Chr1g0367481 RchiOBHm_Chr1g0368431 RchiOBHm_Chr2g0116021 RchiOBHm_Chr2g0133961 RchiOBHm_Chr4g0390151 RchiOBHm_Chr4g0402771 RchiOBHm_Chr4g0419581 RchiOBHm_Chr5g0054351 RchiOBHm_Chr6g0278891 RchiOBHm_Chr7g0201941 RchiOBHm_Chr7g0242761
rosa_laevigata RLG00000002487 RLG00000002488 RLG00000003412 RLG00000003415 RLG00000013607 RLG00000018981 RLG00000018982 RLG00000034520 RLG00000034521
rosa_multiflora Rmu_co8024510.1_g000001 Rmu_co8121892.1_g000001 Rmu_co8133046.1_g000001 Rmu_co8158032.1_g000001 Rmu_co8181114.1_g000001 Rmu_co8202532.1_g000001 Rmu_co8331471.1_g000001 Rmu_co8340209.1_g000001 Rmu_co8359899.1_g000001 Rmu_co8433657.1_g000002 Rmu_co8436419.1_g000002 Rmu_co8458211.1_g000002 Rmu_co8458731.1_g000002 Rmu_co8466361.1_g000001 Rmu_co8474565.1_g000001 Rmu_co8474565.1_g000002 Rmu_co8482201.1_g000001 Rmu_co8491967.1_g000003 Rmu_co8498095.1_g000001 Rmu_co8513217.1_g000002 Rmu_co8518257.1_g000001 Rmu_co8520425.1_g000003 Rmu_co8521283.1_g000003 Rmu_sc0000029.1_g000029 Rmu_sc0000082.1_g000019 Rmu_sc0000147.1_g000107 Rmu_sc0000212.1_g000005 Rmu_sc0000247.1_g000030 Rmu_sc0000367.1_g000175 Rmu_sc0000433.1_g000035 Rmu_sc0000538.1_g000038 Rmu_sc0000550.1_g000010 Rmu_sc0000635.1_g000007 Rmu_sc0000650.1_g000012 Rmu_sc0000652.1_g000009 Rmu_sc0000652.1_g000010 Rmu_sc0000742.1_g000010 Rmu_sc0000750.1_g000007 Rmu_sc0000750.1_g000008 Rmu_sc0000772.1_g000018 Rmu_sc0000830.1_g000026 Rmu_sc0000859.1_g000006 Rmu_sc0001190.1_g000039 Rmu_sc0001190.1_g000050 Rmu_sc0001190.1_g000051 Rmu_sc0001205.1_g000008 Rmu_sc0001294.1_g000025 Rmu_sc0001366.1_g000010 Rmu_sc0001373.1_g000036 Rmu_sc0001423.1_g000046 Rmu_sc0001788.1_g000014 Rmu_sc0001801.1_g000016 Rmu_sc0001849.1_g000032 Rmu_sc0001967.1_g000002 Rmu_sc0002082.1_g000066 Rmu_sc0002250.1_g000013 Rmu_sc0002322.1_g000039 Rmu_sc0002371.1_g000002 Rmu_sc0002522.1_g000036 Rmu_sc0002532.1_g000048 Rmu_sc0002669.1_g000065 Rmu_sc0002669.1_g000067 Rmu_sc0002669.1_g000069 Rmu_sc0002834.1_g000007 Rmu_sc0003226.1_g000070 Rmu_sc0003260.1_g000018 Rmu_sc0003313.1_g000007 Rmu_sc0003441.1_g000018 Rmu_sc0003490.1_g000008 Rmu_sc0003705.1_g000011 Rmu_sc0003737.1_g000013 Rmu_sc0003748.1_g000020 Rmu_sc0003910.1_g000015 Rmu_sc0003919.1_g000029 Rmu_sc0003919.1_g000031 Rmu_sc0004037.1_g000012 Rmu_sc0004099.1_g000003 Rmu_sc0004122.1_g000013 Rmu_sc0004402.1_g000013 Rmu_sc0004646.1_g000035 Rmu_sc0004688.1_g000024 Rmu_sc0004823.1_g000046 Rmu_sc0004869.1_g000003 Rmu_sc0004869.1_g000004 Rmu_sc0005132.1_g000035 Rmu_sc0005190.1_g000001 Rmu_sc0005229.1_g000005 Rmu_sc0005229.1_g000023 Rmu_sc0005363.1_g000034 Rmu_sc0005537.1_g000006 Rmu_sc0005657.1_g000024 Rmu_sc0005856.1_g000011 Rmu_sc0005856.1_g000012 Rmu_sc0005953.1_g000007 Rmu_sc0005971.1_g000015 Rmu_sc0006287.1_g000004 Rmu_sc0006315.1_g000014 Rmu_sc0006518.1_g000003 Rmu_sc0006695.1_g000066 Rmu_sc0006803.1_g000056 Rmu_sc0006822.1_g000002 Rmu_sc0006926.1_g000011 Rmu_sc0007560.1_g000008 Rmu_sc0007582.1_g000005 Rmu_sc0007618.1_g000025 Rmu_sc0007647.1_g000004 Rmu_sc0007656.1_g000013 Rmu_sc0007877.1_g000011 Rmu_sc0008528.1_g000005 Rmu_sc0008528.1_g000006 Rmu_sc0008749.1_g000004 Rmu_sc0008989.1_g000003 Rmu_sc0009120.1_g000010 Rmu_sc0009663.1_g000009 Rmu_sc0010035.1_g000001 Rmu_sc0010160.1_g000010 Rmu_sc0010160.1_g000011 Rmu_sc0010953.1_g000004 Rmu_sc0011008.1_g000006 Rmu_sc0011452.1_g000009 Rmu_sc0012746.1_g000014 Rmu_sc0013612.1_g000017 Rmu_sc0013951.1_g000011 Rmu_sc0014162.1_g000009 Rmu_sc0014162.1_g000010 Rmu_sc0016149.1_g000003 Rmu_sc0016418.1_g000008 Rmu_sc0016418.1_g000009 Rmu_sc0017353.1_g000001 Rmu_sc0017353.1_g000002 Rmu_sc0018537.1_g000012 Rmu_sc0019739.1_g000003 Rmu_sc0019739.1_g000004 Rmu_sc0020186.1_g000016 Rmu_sc0021611.1_g000001 Rmu_sc0022755.1_g000003 Rmu_sc0024226.1_g000006 Rmu_sc0025769.1_g000004 Rmu_sc0025769.1_g000005 Rmu_sc0030235.1_g000004 Rmu_sc0035508.1_g000007 Rmu_sc0036413.1_g000001 Rmu_sc0037646.1_g000001 Rmu_sc0037646.1_g000002 Rmu_sc0037647.1_g000001 Rmu_sc0037647.1_g000002 Rmu_sc0037678.1_g000001 Rmu_ssc0000072.1_g000010 Rmu_ssc0000116.1_g000041 Rmu_ssc0000127.1_g000018 Rmu_ssc0000175.1_g000018 Rmu_ssc0000175.1_g000019 Rmu_ssc0000175.1_g000020 Rmu_ssc0000197.1_g000037 Rmu_ssc0000213.1_g000051 Rmu_ssc0000359.1_g000008 Rmu_ssc0000392.1_g000019
rosa_roxburghii Rroxscaffold_154G00447930 Rroxscaffold_1G00000570 Rroxscaffold_1G00009890 Rroxscaffold_1G00012210 Rroxscaffold_1G00012960 Rroxscaffold_1G00014650 Rroxscaffold_1G00014660 Rroxscaffold_1G00014670 Rroxscaffold_1G00022880 Rroxscaffold_1G00024640 Rroxscaffold_1G00024650 Rroxscaffold_1G00025670 Rroxscaffold_1G00025680 Rroxscaffold_1G00025690 Rroxscaffold_1G00030660 Rroxscaffold_1G00031340 Rroxscaffold_1G00031350 Rroxscaffold_2G00103100 Rroxscaffold_2G00103120 Rroxscaffold_2G00107390 Rroxscaffold_2G00108940 Rroxscaffold_2G00110610 Rroxscaffold_2G00110620 Rroxscaffold_2G00110710 Rroxscaffold_2G00110720 Rroxscaffold_2G00110730 Rroxscaffold_2G00111170 Rroxscaffold_2G00111510 Rroxscaffold_2G00114750 Rroxscaffold_2G00114760 Rroxscaffold_2G00114770 Rroxscaffold_2G00116270 Rroxscaffold_2G00121090 Rroxscaffold_2G00129350 Rroxscaffold_2G00130410 Rroxscaffold_2G00155930 Rroxscaffold_3G00218120 Rroxscaffold_3G00218330 Rroxscaffold_3G00218340 Rroxscaffold_3G00227530 Rroxscaffold_3G00233140 Rroxscaffold_3G00236800 Rroxscaffold_3G00242370 Rroxscaffold_3G00242380 Rroxscaffold_3G00242410 Rroxscaffold_3G00248720 Rroxscaffold_3G00248730 Rroxscaffold_3G00248770 Rroxscaffold_3G00258550 Rroxscaffold_3G00258560 Rroxscaffold_4G00287000 Rroxscaffold_4G00289070 Rroxscaffold_4G00289080 Rroxscaffold_4G00289100 Rroxscaffold_4G00295600 Rroxscaffold_4G00298090 Rroxscaffold_4G00308330 Rroxscaffold_4G00310570 Rroxscaffold_4G00310580 Rroxscaffold_4G00310620 Rroxscaffold_4G00315750 Rroxscaffold_4G00319620 Rroxscaffold_4G00319630 Rroxscaffold_4G00328870 Rroxscaffold_4G00328880 Rroxscaffold_4G00332120 Rroxscaffold_4G00332310 Rroxscaffold_5G00332660 Rroxscaffold_5G00332710 Rroxscaffold_5G00332970 Rroxscaffold_5G00344920 Rroxscaffold_5G00345540 Rroxscaffold_5G00346760 Rroxscaffold_5G00346770 Rroxscaffold_5G00347420 Rroxscaffold_5G00350360 Rroxscaffold_5G00350370 Rroxscaffold_5G00354490 Rroxscaffold_5G00370760 Rroxscaffold_5G00370770 Rroxscaffold_5G00374010 Rroxscaffold_5G00374020 Rroxscaffold_5G00374490 Rroxscaffold_5G00374510 Rroxscaffold_5G00387640 Rroxscaffold_5G00387650 Rroxscaffold_6G00387870 Rroxscaffold_6G00388560 Rroxscaffold_6G00388570 Rroxscaffold_6G00388670 Rroxscaffold_6G00388680 Rroxscaffold_6G00391960 Rroxscaffold_6G00393010 Rroxscaffold_6G00395010 Rroxscaffold_6G00395020 Rroxscaffold_6G00397990 Rroxscaffold_6G00401460 Rroxscaffold_6G00407850 Rroxscaffold_6G00423090 Rroxscaffold_6G00423100 Rroxscaffold_6G00423110 Rroxscaffold_7G00165960 Rroxscaffold_7G00165970 Rroxscaffold_7G00176270 Rroxscaffold_7G00176280 Rroxscaffold_7G00176600 Rroxscaffold_7G00176610 Rroxscaffold_7G00176620 Rroxscaffold_7G00176660 Rroxscaffold_7G00195710
rosa_rugosa Rorug03G0209000 Rorug05G0468000 Rorug05G0468000
rosa_samantha Rh3AG250900 Rh3AG257700 Rh3BG294700 Rh3CG284700 Rh3CG284800 Rh3DG280200 Rh3DG280300 Rh3DG280500 Rh3DG287600 Rh3DG287700 Rh4BG408500 Rh4DG402700 Rh6CG194400 Rh6CG194600 Rh6DG186400 Rh6DG186500 Rh7AG218100 Rh7AG278800 Rh7BG224200 Rh7CG231300 Rh7CG231400 Rh7DG225400
rosa_wichuraiana Rw3G022640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 157
Acc65I GGTACC 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 257
AccBSI CCGCTC 1 cut(s) 192
AccII CGCG 2 cut(s) 289, 449
AclWI GGATC 3 cut(s) 26, 366, 555
AcvI CACGTG 1 cut(s) 641
AfaI GTAC 2 cut(s) 6, 259
AfiI CCNNNNNNNGG 4 cut(s) 151, 243, 267, 453
AgsI TTSAA 1 cut(s) 386
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw26I GTCTC 4 cut(s) 252, 295, 429, 600
AlwI GGATC 3 cut(s) 26, 366, 555
Ama87I CYCGRG 1 cut(s) 249
AoxI GGCC 5 cut(s) 29, 252, 417, 490, 634
ApeKI GCWGC 2 cut(s) 113, 241
Asp718I GGTACC 1 cut(s) 257
AspLEI GCGC 3 cut(s) 55, 289, 291
AspS9I GGNCC 4 cut(s) 29, 252, 417, 635
AsuC2I CCSGG 2 cut(s) 33, 464
AvaI CYCGRG 1 cut(s) 249
BaeI ACNNNNGTAYC 1 cut(s) 29
BanI GGYRCC 1 cut(s) 257
BauI CACGAG 1 cut(s) 146
BbrPI CACGTG 1 cut(s) 641
BbvI GCAGC 2 cut(s) 100, 253
BccI CCATC 4 cut(s) 206, 332, 407, 466
BceAI ACGGC 1 cut(s) 276
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BcnI CCSGG 2 cut(s) 33, 464
BcoDI GTCTC 4 cut(s) 252, 295, 429, 600
BfaI CTAG 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 157
BglI GCCNNNNNGGC 3 cut(s) 37, 498, 595
BisI GCNGC 8 cut(s) 56, 114, 242, 312, 447, 450, 502, 596
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 8 cut(s) 57, 115, 243, 313, 448, 451, 503, 597
Bme1390I CCNGG 2 cut(s) 33, 464
BmeT110I CYCGRG 1 cut(s) 249
BmgT120I GGNCC 4 cut(s) 29, 252, 417, 635
BmiI GGNNCC 3 cut(s) 132, 259, 418
BmrFI CCNGG 2 cut(s) 33, 464
BplI GAGNNNNNCTC 2 cut(s) 115, 147
BpmI CTGGAG 1 cut(s) 578
Bpu1102I GCTNAGC 1 cut(s) 330
BpuMI CCSGG 2 cut(s) 33, 464
BsaAI YACGTR 1 cut(s) 641
BsaBI GATNNNNATC 1 cut(s) 552
BsaI GGTCTC 1 cut(s) 252
BsaJI CCNNGG 3 cut(s) 367, 447, 590
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 243, 267, 453
Bse118I RCCGGY 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 94
Bse8I GATNNNNATC 1 cut(s) 552
BseDI CCNNGG 3 cut(s) 367, 447, 590
BseGI GGATG 1 cut(s) 418
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 4 cut(s) 151, 243, 267, 453
BseMI GCAATG 1 cut(s) 94
BsePI GCGCGC 1 cut(s) 287
BseRI GAGGAG 2 cut(s) 63, 242
BseXI GCAGC 2 cut(s) 100, 253
BsgI GTGCAG 1 cut(s) 591
Bsh1236I CGCG 2 cut(s) 289, 449
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 5 cut(s) 31, 254, 419, 492, 636
BshNI GGYRCC 1 cut(s) 257
BsiEI CGRYCG 1 cut(s) 373
BsiHKCI CYCGRG 1 cut(s) 249
BsiSI CCGG 3 cut(s) 32, 255, 463
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 4 cut(s) 151, 243, 267, 453
BsmAI GTCTC 4 cut(s) 252, 295, 429, 600
BsmBI CGTCTC 2 cut(s) 429, 600
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 5 cut(s) 31, 254, 419, 492, 636
Bso31I GGTCTC 1 cut(s) 252
BsoBI CYCGRG 1 cut(s) 249
Bsp143I GATC 7 cut(s) 18, 358, 376, 507, 518, 547, 553
Bsp1720I GCTNAGC 1 cut(s) 330
BspANI GGCC 5 cut(s) 31, 254, 419, 492, 636
BspFNI CGCG 2 cut(s) 289, 449
BspLI GGNNCC 3 cut(s) 132, 259, 418
BspMI ACCTGC 1 cut(s) 157
BspPI GGATC 3 cut(s) 26, 366, 555
BspT107I GGYRCC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 252
BsrBI CCGCTC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 254
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 3 cut(s) 367, 447, 590
BssHII GCGCGC 1 cut(s) 287
BssMI GATC 7 cut(s) 18, 358, 376, 507, 518, 547, 553
BssSI CACGAG 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 590
Bst2BI CACGAG 1 cut(s) 146
Bst4CI ACNGT 2 cut(s) 440, 624
BstAPI GCANNNNNTGC 1 cut(s) 484
BstBAI YACGTR 1 cut(s) 641
BstC8I GCNNGC 6 cut(s) 180, 194, 289, 499, 514, 570
BstDEI CTNAG 2 cut(s) 104, 330
BstDSI CCRYGG 1 cut(s) 447
BstF5I GGATG 1 cut(s) 418
BstFNI CGCG 2 cut(s) 289, 449
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 3 cut(s) 55, 289, 291
BstKTI GATC 7 cut(s) 21, 361, 379, 510, 521, 550, 556
BstMAI GTCTC 4 cut(s) 252, 295, 429, 600
BstMBI GATC 7 cut(s) 18, 358, 376, 507, 518, 547, 553
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 8 cut(s) 37, 52, 288, 484, 498, 595, 601, 625
BstNSI RCATGY 1 cut(s) 582
BstSCI CCNGG 2 cut(s) 31, 462
BstUI CGCG 2 cut(s) 289, 449
BstV1I GCAGC 2 cut(s) 100, 253
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 5 cut(s) 31, 254, 419, 492, 636
BtgI CCRYGG 1 cut(s) 447
BtsCI GGATG 1 cut(s) 418
BveI ACCTGC 1 cut(s) 157
Cac8I GCNNGC 6 cut(s) 180, 194, 289, 499, 514, 570
CfoI GCGC 3 cut(s) 55, 289, 291
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 4 cut(s) 29, 252, 417, 635
Cfr42I CCGCGG 1 cut(s) 450
Csp6I GTAC 2 cut(s) 5, 258
CviAII CATG 1 cut(s) 579
CviQI GTAC 2 cut(s) 5, 258
DdeI CTNAG 2 cut(s) 104, 330
DpnI GATC 7 cut(s) 20, 360, 378, 509, 520, 549, 555
DpnII GATC 7 cut(s) 18, 358, 376, 507, 518, 547, 553
Eco130I CCWWGG 1 cut(s) 590
Eco31I GGTCTC 1 cut(s) 252
Eco32I GATATC 1 cut(s) 647
Eco72I CACGTG 1 cut(s) 641
Eco88I CYCGRG 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 417
EcoRV GATATC 1 cut(s) 647
EcoT14I CCWWGG 1 cut(s) 590
ErhI CCWWGG 1 cut(s) 590
Esp3I CGTCTC 2 cut(s) 429, 600
FaeI CATG 1 cut(s) 582
FaiI YATR 6 cut(s) 176, 276, 306, 323, 485, 580
FalI AAGNNNNNCTT 2 cut(s) 505, 537
FaqI GGGAC 1 cut(s) 284
FatI CATG 1 cut(s) 578
FauI CCCGC 5 cut(s) 185, 260, 490, 537, 621
Fnu4HI GCNGC 8 cut(s) 56, 114, 242, 312, 447, 450, 502, 596
FokI GGATG 1 cut(s) 425
Fsp4HI GCNGC 8 cut(s) 56, 114, 242, 312, 447, 450, 502, 596
FspBI CTAG 1 cut(s) 26
GlaI GCGC 3 cut(s) 54, 288, 290
GluI GCNGC 8 cut(s) 56, 114, 242, 312, 447, 450, 502, 596
GsuI CTGGAG 1 cut(s) 578
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 5 cut(s) 31, 254, 419, 492, 636
HapII CCGG 3 cut(s) 32, 255, 463
HhaI GCGC 3 cut(s) 55, 289, 291
Hin1II CATG 1 cut(s) 582
Hin6I GCGC 3 cut(s) 53, 287, 289
HinP1I GCGC 3 cut(s) 53, 287, 289
HpaII CCGG 3 cut(s) 32, 255, 463
Hpy188I TCNGA 2 cut(s) 412, 434
Hpy188III TCNNGA 4 cut(s) 140, 374, 551, 557
HpyAV CCTTC 1 cut(s) 3
HpyCH4III ACNGT 2 cut(s) 440, 624
HpyCH4IV ACGT 1 cut(s) 640
HpyCH4V TGCA 6 cut(s) 116, 182, 478, 526, 572, 662
HpyF10VI GCNNNNNNNGC 8 cut(s) 37, 52, 288, 484, 498, 595, 601, 625
HpyF3I CTNAG 2 cut(s) 104, 330
HpySE526I ACGT 1 cut(s) 640
Hsp92II CATG 1 cut(s) 582
HspAI GCGC 3 cut(s) 53, 287, 289
KpnI GGTACC 1 cut(s) 261
KspI CCGCGG 1 cut(s) 450
Kzo9I GATC 7 cut(s) 18, 358, 376, 507, 518, 547, 553
LmnI GCTCC 7 cut(s) 50, 100, 136, 189, 203, 559, 575
LpnPI CCDG 6 cut(s) 45, 152, 268, 476, 542, 558
Lsp1109I GCAGC 2 cut(s) 100, 253
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 640
MaeIII GTNAC 1 cut(s) 217
MalI GATC 7 cut(s) 20, 360, 378, 509, 520, 549, 555
MbiI CCGCTC 1 cut(s) 192
MboI GATC 7 cut(s) 18, 358, 376, 507, 518, 547, 553
MboII GAAGA 2 cut(s) 403, 481
MflI RGATCY 1 cut(s) 358
MluCI AATT 1 cut(s) 62
MmeI TCCRAC 2 cut(s) 78, 138
MspA1I CMGCKG 2 cut(s) 244, 449
MspI CCGG 3 cut(s) 32, 255, 463
MspR9I CCNGG 2 cut(s) 33, 464
MvnI CGCG 2 cut(s) 289, 449
MwoI GCNNNNNNNGC 8 cut(s) 37, 52, 288, 484, 498, 595, 601, 625
NciI CCSGG 2 cut(s) 33, 464
NdeII GATC 7 cut(s) 18, 358, 376, 507, 518, 547, 553
NlaIII CATG 1 cut(s) 582
NlaIV GGNNCC 3 cut(s) 132, 259, 418
NmeAIII GCCGAG 2 cut(s) 118, 262
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 1 cut(s) 582
PauI GCGCGC 1 cut(s) 287
PcsI WCGNNNNNNNCGW 1 cut(s) 646
PkrI GCNGC 8 cut(s) 57, 115, 243, 313, 448, 451, 503, 597
PmaCI CACGTG 1 cut(s) 641
PmlI CACGTG 1 cut(s) 641
Ppu21I YACGTR 1 cut(s) 641
PspCI CACGTG 1 cut(s) 641
PspN4I GGNNCC 3 cut(s) 132, 259, 418
PspPI GGNCC 4 cut(s) 29, 252, 417, 635
PsuI RGATCY 1 cut(s) 358
PteI GCGCGC 1 cut(s) 287
RsaI GTAC 2 cut(s) 6, 259
RsaNI GTAC 2 cut(s) 5, 258
SacII CCGCGG 1 cut(s) 450
SatI GCNGC 8 cut(s) 56, 114, 242, 312, 447, 450, 502, 596
Sau3AI GATC 7 cut(s) 18, 358, 376, 507, 518, 547, 553
Sau96I GGNCC 4 cut(s) 29, 252, 417, 635
ScrFI CCNGG 2 cut(s) 33, 464
Sfr303I CCGCGG 1 cut(s) 450
SgrBI CCGCGG 1 cut(s) 450
Sse9I AATT 1 cut(s) 62
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 31, 462
StyI CCWWGG 1 cut(s) 590
TaaI ACNGT 2 cut(s) 440, 624
TaiI ACGT 1 cut(s) 643
TaqI TCGA 4 cut(s) 373, 537, 585, 649
TaqII GACCGA 2 cut(s) 11, 359
TasI AATT 1 cut(s) 62
TauI GCSGC 6 cut(s) 58, 314, 449, 452, 504, 598
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 2 cut(s) 113, 241
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 1 cut(s) 410
XceI RCATGY 1 cut(s) 582
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.