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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcyI | GRCGYC | 1 cut(s) | 30 |
| AfaI | GTAC | 2 cut(s) | 281, 335 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 195, 201, 261 |
| AgsI | TTSAA | 1 cut(s) | 358 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 338, 370 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 117, 149 |
| AluBI | AGCT | 1 cut(s) | 153 |
| AluI | AGCT | 1 cut(s) | 153 |
| Ama87I | CYCGRG | 1 cut(s) | 194 |
| AoxI | GGCC | 3 cut(s) | 186, 197, 256 |
| AspS9I | GGNCC | 2 cut(s) | 197, 257 |
| AsuC2I | CCSGG | 4 cut(s) | 6, 120, 195, 196 |
| AsuHPI | GGTGA | 2 cut(s) | 58, 226 |
| AsuNHI | GCTAGC | 1 cut(s) | 17 |
| AvaI | CYCGRG | 1 cut(s) | 194 |
| BccI | CCATC | 2 cut(s) | 68, 168 |
| BcnI | CCSGG | 4 cut(s) | 6, 120, 195, 196 |
| BfaI | CTAG | 4 cut(s) | 18, 210, 327, 409 |
| BglII | AGATCT | 1 cut(s) | 288 |
| Bme1390I | CCNGG | 4 cut(s) | 6, 120, 195, 196 |
| BmeT110I | CYCGRG | 1 cut(s) | 194 |
| BmgT120I | GGNCC | 2 cut(s) | 197, 257 |
| BmrFI | CCNGG | 4 cut(s) | 6, 120, 195, 196 |
| BmsI | GCATC | 2 cut(s) | 46, 131 |
| BmtI | GCTAGC | 1 cut(s) | 21 |
| BpuMI | CCSGG | 4 cut(s) | 6, 120, 195, 196 |
| BsaHI | GRCGYC | 1 cut(s) | 30 |
| BsaJI | CCNNGG | 5 cut(s) | 42, 194, 200, 237, 260 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 117, 147 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 195, 201, 261 |
| Bse118I | RCCGGY | 2 cut(s) | 184, 254 |
| BseDI | CCNNGG | 5 cut(s) | 42, 194, 200, 237, 260 |
| BseGI | GGATG | 2 cut(s) | 61, 218 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 195, 201, 261 |
| BseRI | GAGGAG | 1 cut(s) | 83 |
| BshFI | GGCC | 3 cut(s) | 188, 199, 258 |
| BsiHKCI | CYCGRG | 1 cut(s) | 194 |
| BsiSI | CCGG | 5 cut(s) | 6, 119, 185, 195, 255 |
| BslFI | GGGAC | 2 cut(s) | 325, 390 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 195, 201, 261 |
| BsmFI | GGGAC | 2 cut(s) | 325, 390 |
| BsnI | GGCC | 3 cut(s) | 188, 199, 258 |
| BsoBI | CYCGRG | 1 cut(s) | 194 |
| Bsp1407I | TGTACA | 1 cut(s) | 333 |
| Bsp143I | GATC | 1 cut(s) | 288 |
| Bsp19I | CCATGG | 2 cut(s) | 237, 260 |
| BspANI | GGCC | 3 cut(s) | 188, 199, 258 |
| BspOI | GCTAGC | 1 cut(s) | 21 |
| BsrFI | RCCGGY | 2 cut(s) | 184, 254 |
| BsrGI | TGTACA | 1 cut(s) | 333 |
| BssAI | RCCGGY | 2 cut(s) | 184, 254 |
| BssECI | CCNNGG | 5 cut(s) | 42, 194, 200, 237, 260 |
| BssMI | GATC | 1 cut(s) | 288 |
| BssNI | GRCGYC | 1 cut(s) | 30 |
| BssT1I | CCWWGG | 3 cut(s) | 200, 237, 260 |
| BstACI | GRCGYC | 1 cut(s) | 30 |
| BstAUI | TGTACA | 1 cut(s) | 333 |
| BstC8I | GCNNGC | 3 cut(s) | 19, 186, 256 |
| BstDEI | CTNAG | 1 cut(s) | 311 |
| BstDSI | CCRYGG | 2 cut(s) | 237, 260 |
| BstF5I | GGATG | 2 cut(s) | 61, 218 |
| BstKTI | GATC | 1 cut(s) | 291 |
| BstMBI | GATC | 1 cut(s) | 288 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 38, 150, 190 |
| BstSCI | CCNGG | 4 cut(s) | 4, 118, 193, 194 |
| BstX2I | RGATCY | 1 cut(s) | 288 |
| BstYI | RGATCY | 1 cut(s) | 288 |
| BsuRI | GGCC | 3 cut(s) | 188, 199, 258 |
| BtgI | CCRYGG | 2 cut(s) | 237, 260 |
| BtsCI | GGATG | 2 cut(s) | 61, 218 |
| Cac8I | GCNNGC | 3 cut(s) | 19, 186, 256 |
| Cfr10I | RCCGGY | 2 cut(s) | 184, 254 |
| Cfr13I | GGNCC | 2 cut(s) | 197, 257 |
| Cfr9I | CCCGGG | 1 cut(s) | 194 |
| CseI | GACGC | 1 cut(s) | 38 |
| Csp6I | GTAC | 2 cut(s) | 280, 334 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 295, 330 |
| CviAII | CATG | 2 cut(s) | 238, 261 |
| CviJI | RGCY | 6 cut(s) | 153, 188, 199, 209, 254, 258 |
| CviKI_1 | RGCY | 6 cut(s) | 153, 188, 199, 209, 254, 258 |
| CviQI | GTAC | 2 cut(s) | 280, 334 |
| DdeI | CTNAG | 1 cut(s) | 311 |
| DpnI | GATC | 1 cut(s) | 290 |
| DpnII | GATC | 1 cut(s) | 288 |
| Eco130I | CCWWGG | 3 cut(s) | 200, 237, 260 |
| Eco88I | CYCGRG | 1 cut(s) | 194 |
| EcoT14I | CCWWGG | 3 cut(s) | 200, 237, 260 |
| ErhI | CCWWGG | 3 cut(s) | 200, 237, 260 |
| FaeI | CATG | 2 cut(s) | 241, 264 |
| FaiI | YATR | 8 cut(s) | 37, 39, 147, 225, 239, 262, 267, 332 |
| FaqI | GGGAC | 2 cut(s) | 325, 390 |
| FatI | CATG | 2 cut(s) | 237, 260 |
| FauNDI | CATATG | 1 cut(s) | 37 |
| FokI | GGATG | 2 cut(s) | 68, 205 |
| FspBI | CTAG | 4 cut(s) | 18, 210, 327, 409 |
| HaeIII | GGCC | 3 cut(s) | 188, 199, 258 |
| HapII | CCGG | 5 cut(s) | 6, 119, 185, 195, 255 |
| HgaI | GACGC | 1 cut(s) | 38 |
| Hin1I | GRCGYC | 1 cut(s) | 30 |
| Hin1II | CATG | 2 cut(s) | 241, 264 |
| HinfI | GANTC | 2 cut(s) | 83, 229 |
| HpaII | CCGG | 5 cut(s) | 6, 119, 185, 195, 255 |
| HphI | GGTGA | 2 cut(s) | 58, 226 |
| Hpy188I | TCNGA | 1 cut(s) | 88 |
| Hpy188III | TCNNGA | 2 cut(s) | 248, 358 |
| HpyCH4IV | ACGT | 1 cut(s) | 108 |
| HpyCH4V | TGCA | 1 cut(s) | 105 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 38, 150, 190 |
| HpyF3I | CTNAG | 1 cut(s) | 311 |
| HpySE526I | ACGT | 1 cut(s) | 108 |
| Hsp92I | GRCGYC | 1 cut(s) | 30 |
| Hsp92II | CATG | 2 cut(s) | 241, 264 |
| KroI | GCCGGC | 2 cut(s) | 184, 254 |
| KroNI | GCCGGC | 2 cut(s) | 186, 256 |
| Kzo9I | GATC | 1 cut(s) | 288 |
| LpnPI | CCDG | 6 cut(s) | 19, 132, 198, 208, 246, 268 |
| LweI | GCATC | 2 cut(s) | 46, 131 |
| MaeI | CTAG | 4 cut(s) | 18, 210, 327, 409 |
| MaeII | ACGT | 1 cut(s) | 108 |
| MaeIII | GTNAC | 3 cut(s) | 26, 214, 392 |
| MalI | GATC | 1 cut(s) | 290 |
| MboI | GATC | 1 cut(s) | 288 |
| MboII | GAAGA | 1 cut(s) | 128 |
| MflI | RGATCY | 1 cut(s) | 288 |
| MluCI | AATT | 2 cut(s) | 168, 294 |
| MlyI | GAGTC | 2 cut(s) | 77, 238 |
| MnlI | CCTC | 5 cut(s) | 4, 37, 61, 82, 121 |
| MroNI | GCCGGC | 2 cut(s) | 184, 254 |
| MseI | TTAA | 2 cut(s) | 293, 381 |
| MspI | CCGG | 5 cut(s) | 6, 119, 185, 195, 255 |
| MspR9I | CCNGG | 4 cut(s) | 6, 120, 195, 196 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 38, 150, 190 |
| NaeI | GCCGGC | 2 cut(s) | 186, 256 |
| NciI | CCSGG | 4 cut(s) | 6, 120, 195, 196 |
| NcoI | CCATGG | 2 cut(s) | 237, 260 |
| NdeI | CATATG | 1 cut(s) | 37 |
| NdeII | GATC | 1 cut(s) | 288 |
| NgoMIV | GCCGGC | 2 cut(s) | 184, 254 |
| NheI | GCTAGC | 1 cut(s) | 17 |
| NlaIII | CATG | 2 cut(s) | 241, 264 |
| NmeAIII | GCCGAG | 1 cut(s) | 67 |
| NmuCI | GTSAC | 3 cut(s) | 26, 214, 392 |
| PdiI | GCCGGC | 2 cut(s) | 186, 256 |
| PleI | GAGTC | 2 cut(s) | 77, 237 |
| PpsI | GAGTC | 2 cut(s) | 77, 237 |
| PspPI | GGNCC | 2 cut(s) | 197, 257 |
| PsuI | RGATCY | 1 cut(s) | 288 |
| RsaI | GTAC | 2 cut(s) | 281, 335 |
| RsaNI | GTAC | 2 cut(s) | 280, 334 |
| SaqAI | TTAA | 2 cut(s) | 293, 381 |
| Sau3AI | GATC | 1 cut(s) | 288 |
| Sau96I | GGNCC | 2 cut(s) | 197, 257 |
| SchI | GAGTC | 2 cut(s) | 77, 238 |
| ScrFI | CCNGG | 4 cut(s) | 6, 120, 195, 196 |
| SetI | ASST | 7 cut(s) | 15, 48, 93, 111, 132, 155, 402 |
| SfaNI | GCATC | 2 cut(s) | 46, 131 |
| SmaI | CCCGGG | 1 cut(s) | 196 |
| SrfI | GCCCGGGC | 1 cut(s) | 196 |
| Sse9I | AATT | 2 cut(s) | 168, 294 |
| SspI | AATATT | 1 cut(s) | 387 |
| SspMI | CTAG | 4 cut(s) | 18, 210, 327, 409 |
| StyD4I | CCNGG | 4 cut(s) | 4, 118, 193, 194 |
| StyI | CCWWGG | 3 cut(s) | 200, 237, 260 |
| TaiI | ACGT | 1 cut(s) | 111 |
| TaqI | TCGA | 1 cut(s) | 139 |
| TasI | AATT | 2 cut(s) | 168, 294 |
| TatI | WGTACW | 1 cut(s) | 333 |
| Tru1I | TTAA | 2 cut(s) | 293, 381 |
| Tru9I | TTAA | 2 cut(s) | 293, 381 |
| TseFI | GTSAC | 3 cut(s) | 26, 214, 392 |
| Tsp45I | GTSAC | 3 cut(s) | 26, 214, 392 |
| TspGWI | ACGGA | 1 cut(s) | 68 |
| TspMI | CCCGGG | 1 cut(s) | 194 |
| XmaI | CCCGGG | 1 cut(s) | 194 |
| XspI | CTAG | 4 cut(s) | 18, 210, 327, 409 |