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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 277 |
| AccBSI | CCGCTC | 1 cut(s) | 366 |
| AccII | CGCG | 1 cut(s) | 459 |
| AciI | CCGC | 4 cut(s) | 230, 366, 449, 464 |
| AclWI | GGATC | 2 cut(s) | 403, 410 |
| AcoI | YGGCCR | 2 cut(s) | 231, 496 |
| AcuI | CTGAAG | 2 cut(s) | 186, 209 |
| AfaI | GTAC | 2 cut(s) | 475, 513 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 418 |
| AgsI | TTSAA | 2 cut(s) | 314, 337 |
| AluBI | AGCT | 3 cut(s) | 103, 223, 333 |
| AluI | AGCT | 3 cut(s) | 103, 223, 333 |
| Alw21I | GWGCWC | 1 cut(s) | 19 |
| Alw26I | GTCTC | 1 cut(s) | 323 |
| AlwI | GGATC | 2 cut(s) | 403, 410 |
| Ama87I | CYCGRG | 2 cut(s) | 150, 320 |
| AoxI | GGCC | 4 cut(s) | 147, 231, 489, 496 |
| ApaI | GGGCCC | 1 cut(s) | 151 |
| ApeKI | GCWGC | 1 cut(s) | 103 |
| AspS9I | GGNCC | 3 cut(s) | 147, 148, 490 |
| AsuC2I | CCSGG | 2 cut(s) | 151, 152 |
| AsuHPI | GGTGA | 2 cut(s) | 166, 464 |
| AvaI | CYCGRG | 2 cut(s) | 150, 320 |
| BaeGI | GKGCMC | 1 cut(s) | 151 |
| BalI | TGGCCA | 1 cut(s) | 498 |
| BanII | GRGCYC | 1 cut(s) | 151 |
| Bbv12I | GWGCWC | 1 cut(s) | 19 |
| BbvCI | CCTCAGC | 1 cut(s) | 51 |
| BbvI | GCAGC | 1 cut(s) | 90 |
| BccI | CCATC | 2 cut(s) | 113, 354 |
| BcnI | CCSGG | 2 cut(s) | 151, 152 |
| BcoDI | GTCTC | 1 cut(s) | 323 |
| BfaI | CTAG | 2 cut(s) | 86, 345 |
| BfuAI | ACCTGC | 1 cut(s) | 277 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 504 |
| BisI | GCNGC | 3 cut(s) | 104, 231, 367 |
| BlsI | GCNGC | 3 cut(s) | 105, 232, 368 |
| Bme1390I | CCNGG | 2 cut(s) | 151, 152 |
| BmeT110I | CYCGRG | 2 cut(s) | 150, 320 |
| BmgT120I | GGNCC | 3 cut(s) | 147, 148, 490 |
| BmiI | GGNNCC | 2 cut(s) | 149, 252 |
| BmrFI | CCNGG | 2 cut(s) | 151, 152 |
| BmsI | GCATC | 2 cut(s) | 46, 446 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 235, 267 |
| BpmI | CTGGAG | 1 cut(s) | 449 |
| Bpu10I | CCTNAGC | 1 cut(s) | 51 |
| BpuEI | CTTGAG | 1 cut(s) | 355 |
| BpuMI | CCSGG | 2 cut(s) | 151, 152 |
| BsaBI | GATNNNNATC | 1 cut(s) | 407 |
| BsaJI | CCNNGG | 3 cut(s) | 150, 237, 493 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 418 |
| Bse8I | GATNNNNATC | 1 cut(s) | 407 |
| BseDI | CCNNGG | 3 cut(s) | 150, 237, 493 |
| BseGI | GGATG | 3 cut(s) | 61, 124, 384 |
| BseJI | GATNNNNATC | 1 cut(s) | 407 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 418 |
| BseMII | CTCAG | 1 cut(s) | 42 |
| BseRI | GAGGAG | 1 cut(s) | 44 |
| BseSI | GKGCMC | 1 cut(s) | 151 |
| BseXI | GCAGC | 1 cut(s) | 90 |
| BsgI | GTGCAG | 1 cut(s) | 197 |
| Bsh1236I | CGCG | 1 cut(s) | 459 |
| Bsh1285I | CGRYCG | 1 cut(s) | 265 |
| BshFI | GGCC | 4 cut(s) | 149, 233, 491, 498 |
| BsiEI | CGRYCG | 1 cut(s) | 265 |
| BsiHKAI | GWGCWC | 1 cut(s) | 19 |
| BsiHKCI | CYCGRG | 2 cut(s) | 150, 320 |
| BsiSI | CCGG | 1 cut(s) | 151 |
| BslFI | GGGAC | 1 cut(s) | 456 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 418 |
| BsmAI | GTCTC | 1 cut(s) | 323 |
| BsmFI | GGGAC | 1 cut(s) | 456 |
| BsmI | GAATGC | 1 cut(s) | 209 |
| BsnI | GGCC | 4 cut(s) | 149, 233, 491, 498 |
| BsoBI | CYCGRG | 2 cut(s) | 150, 320 |
| Bsp120I | GGGCCC | 1 cut(s) | 147 |
| Bsp1286I | GDGCHC | 2 cut(s) | 19, 151 |
| Bsp143I | GATC | 5 cut(s) | 136, 262, 402, 408, 454 |
| Bsp68I | TCGCGA | 1 cut(s) | 459 |
| BspACI | CCGC | 4 cut(s) | 230, 366, 449, 464 |
| BspANI | GGCC | 4 cut(s) | 149, 233, 491, 498 |
| BspCNI | CTCAG | 1 cut(s) | 43 |
| BspFNI | CGCG | 1 cut(s) | 459 |
| BspLI | GGNNCC | 2 cut(s) | 149, 252 |
| BspMI | ACCTGC | 1 cut(s) | 277 |
| BspPI | GGATC | 2 cut(s) | 403, 410 |
| BspQI | GCTCTTC | 1 cut(s) | 162 |
| BsrBI | CCGCTC | 1 cut(s) | 366 |
| BssECI | CCNNGG | 3 cut(s) | 150, 237, 493 |
| BssMI | GATC | 5 cut(s) | 136, 262, 402, 408, 454 |
| BssT1I | CCWWGG | 1 cut(s) | 237 |
| Bst6I | CTCTTC | 1 cut(s) | 162 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 424 |
| BstC8I | GCNNGC | 3 cut(s) | 15, 342, 420 |
| BstDEI | CTNAG | 1 cut(s) | 51 |
| BstDSI | CCRYGG | 1 cut(s) | 493 |
| BstF5I | GGATG | 3 cut(s) | 61, 124, 384 |
| BstFNI | CGCG | 1 cut(s) | 459 |
| BstKTI | GATC | 5 cut(s) | 139, 265, 405, 411, 457 |
| BstMAI | GTCTC | 1 cut(s) | 323 |
| BstMBI | GATC | 5 cut(s) | 136, 262, 402, 408, 454 |
| BstMCI | CGRYCG | 1 cut(s) | 265 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 56, 424, 504 |
| BstSCI | CCNGG | 2 cut(s) | 149, 150 |
| BstSLI | GKGCMC | 1 cut(s) | 151 |
| BstUI | CGCG | 1 cut(s) | 459 |
| BstV1I | GCAGC | 1 cut(s) | 90 |
| BsuRI | GGCC | 4 cut(s) | 149, 233, 491, 498 |
| BtgI | CCRYGG | 1 cut(s) | 493 |
| BtgZI | GCGATG | 1 cut(s) | 222 |
| BtsCI | GGATG | 3 cut(s) | 61, 124, 384 |
| BtuMI | TCGCGA | 1 cut(s) | 459 |
| BveI | ACCTGC | 1 cut(s) | 277 |
| Cac8I | GCNNGC | 3 cut(s) | 15, 342, 420 |
| Cfr13I | GGNCC | 3 cut(s) | 147, 148, 490 |
| Cfr9I | CCCGGG | 1 cut(s) | 150 |
| Csp6I | GTAC | 2 cut(s) | 474, 512 |
| CviAII | CATG | 1 cut(s) | 485 |
| CviQI | GTAC | 2 cut(s) | 474, 512 |
| DdeI | CTNAG | 1 cut(s) | 51 |
| DpnI | GATC | 5 cut(s) | 138, 264, 404, 410, 456 |
| DpnII | GATC | 5 cut(s) | 136, 262, 402, 408, 454 |
| EaeI | YGGCCR | 2 cut(s) | 231, 496 |
| Eam1104I | CTCTTC | 1 cut(s) | 162 |
| EarI | CTCTTC | 1 cut(s) | 162 |
| EciI | GGCGGA | 1 cut(s) | 479 |
| Eco130I | CCWWGG | 1 cut(s) | 237 |
| Eco24I | GRGCYC | 1 cut(s) | 151 |
| Eco57I | CTGAAG | 2 cut(s) | 186, 209 |
| Eco88I | CYCGRG | 2 cut(s) | 150, 320 |
| EcoO109I | RGGNCCY | 1 cut(s) | 147 |
| EcoT14I | CCWWGG | 1 cut(s) | 237 |
| EcoT38I | GRGCYC | 1 cut(s) | 151 |
| ErhI | CCWWGG | 1 cut(s) | 237 |
| FaeI | CATG | 1 cut(s) | 488 |
| FaiI | YATR | 2 cut(s) | 125, 486 |
| FaqI | GGGAC | 1 cut(s) | 456 |
| FatI | CATG | 1 cut(s) | 484 |
| FauI | CCCGC | 1 cut(s) | 442 |
| Fnu4HI | GCNGC | 3 cut(s) | 104, 231, 367 |
| FokI | GGATG | 3 cut(s) | 68, 131, 391 |
| FriOI | GRGCYC | 1 cut(s) | 151 |
| Fsp4HI | GCNGC | 3 cut(s) | 104, 231, 367 |
| FspBI | CTAG | 2 cut(s) | 86, 345 |
| GluI | GCNGC | 3 cut(s) | 104, 231, 367 |
| GsuI | CTGGAG | 1 cut(s) | 449 |
| HaeIII | GGCC | 4 cut(s) | 149, 233, 491, 498 |
| HapII | CCGG | 1 cut(s) | 151 |
| Hin1II | CATG | 1 cut(s) | 488 |
| HinfI | GANTC | 2 cut(s) | 77, 295 |
| HpaII | CCGG | 1 cut(s) | 151 |
| HphI | GGTGA | 2 cut(s) | 166, 464 |
| Hpy188I | TCNGA | 2 cut(s) | 200, 393 |
| Hpy188III | TCNNGA | 8 cut(s) | 97, 260, 320, 322, 372, 406, 441, 458 |
| Hpy99I | CGWCG | 1 cut(s) | 42 |
| HpyAV | CCTTC | 2 cut(s) | 342, 369 |
| HpyCH4V | TGCA | 4 cut(s) | 106, 178, 301, 437 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 56, 424, 504 |
| HpyF3I | CTNAG | 1 cut(s) | 51 |
| Hsp92II | CATG | 1 cut(s) | 488 |
| Kzo9I | GATC | 5 cut(s) | 136, 262, 402, 408, 454 |
| LguI | GCTCTTC | 1 cut(s) | 162 |
| LmnI | GCTCC | 7 cut(s) | 10, 70, 220, 256, 363, 532, 550 |
| LpnPI | CCDG | 9 cut(s) | 130, 164, 164, 212, 272, 326, 384, 404, 413 |
| Lsp1109I | GCAGC | 1 cut(s) | 90 |
| LweI | GCATC | 2 cut(s) | 46, 446 |
| MaeI | CTAG | 2 cut(s) | 86, 345 |
| MalI | GATC | 5 cut(s) | 138, 264, 404, 410, 456 |
| MbiI | CCGCTC | 1 cut(s) | 366 |
| MboI | GATC | 5 cut(s) | 136, 262, 402, 408, 454 |
| MboII | GAAGA | 1 cut(s) | 179 |
| MhlI | GDGCHC | 2 cut(s) | 19, 151 |
| MlsI | TGGCCA | 1 cut(s) | 498 |
| MluNI | TGGCCA | 1 cut(s) | 498 |
| MlyI | GAGTC | 1 cut(s) | 86 |
| MmeI | TCCRAC | 3 cut(s) | 105, 198, 371 |
| Mox20I | TGGCCA | 1 cut(s) | 498 |
| MscI | TGGCCA | 1 cut(s) | 498 |
| Msp20I | TGGCCA | 1 cut(s) | 498 |
| MspI | CCGG | 1 cut(s) | 151 |
| MspR9I | CCNGG | 2 cut(s) | 151, 152 |
| Mva1269I | GAATGC | 1 cut(s) | 209 |
| MvnI | CGCG | 1 cut(s) | 459 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 56, 424, 504 |
| NciI | CCSGG | 2 cut(s) | 151, 152 |
| NdeII | GATC | 5 cut(s) | 136, 262, 402, 408, 454 |
| NlaIII | CATG | 1 cut(s) | 488 |
| NlaIV | GGNNCC | 2 cut(s) | 149, 252 |
| NruI | TCGCGA | 1 cut(s) | 459 |
| PaeR7I | CTCGAG | 1 cut(s) | 320 |
| PciSI | GCTCTTC | 1 cut(s) | 162 |
| PctI | GAATGC | 1 cut(s) | 209 |
| PfeI | GAWTC | 1 cut(s) | 295 |
| PkrI | GCNGC | 3 cut(s) | 105, 232, 368 |
| Ple19I | CGATCG | 1 cut(s) | 265 |
| PleI | GAGTC | 1 cut(s) | 85 |
| PpsI | GAGTC | 1 cut(s) | 85 |
| PspN4I | GGNNCC | 2 cut(s) | 149, 252 |
| PspOMI | GGGCCC | 1 cut(s) | 147 |
| PspPI | GGNCC | 3 cut(s) | 147, 148, 490 |
| PvuI | CGATCG | 1 cut(s) | 265 |
| RruI | TCGCGA | 1 cut(s) | 459 |
| RsaI | GTAC | 2 cut(s) | 475, 513 |
| RsaNI | GTAC | 2 cut(s) | 474, 512 |
| SapI | GCTCTTC | 1 cut(s) | 162 |
| SatI | GCNGC | 3 cut(s) | 104, 231, 367 |
| Sau3AI | GATC | 5 cut(s) | 136, 262, 402, 408, 454 |
| Sau96I | GGNCC | 3 cut(s) | 147, 148, 490 |
| SchI | GAGTC | 1 cut(s) | 86 |
| ScrFI | CCNGG | 2 cut(s) | 151, 152 |
| SduI | GDGCHC | 2 cut(s) | 19, 151 |
| SetI | ASST | 9 cut(s) | 87, 105, 225, 239, 291, 312, 335, 471, 513 |
| SfaNI | GCATC | 2 cut(s) | 46, 446 |
| Sfr274I | CTCGAG | 1 cut(s) | 320 |
| SlaI | CTCGAG | 1 cut(s) | 320 |
| SmaI | CCCGGG | 1 cut(s) | 152 |
| SmlI | CTYRAG | 2 cut(s) | 320, 370 |
| SmoI | CTYRAG | 2 cut(s) | 320, 370 |
| SsiI | CCGC | 4 cut(s) | 230, 366, 449, 464 |
| SspMI | CTAG | 2 cut(s) | 86, 345 |
| StyD4I | CCNGG | 2 cut(s) | 149, 150 |
| StyI | CCWWGG | 1 cut(s) | 237 |
| TaqI | TCGA | 3 cut(s) | 96, 213, 321 |
| TauI | GCSGC | 2 cut(s) | 233, 369 |
| TfiI | GAWTC | 1 cut(s) | 295 |
| TseI | GCWGC | 1 cut(s) | 103 |
| TspGWI | ACGGA | 1 cut(s) | 57 |
| TspMI | CCCGGG | 1 cut(s) | 150 |
| XhoI | CTCGAG | 1 cut(s) | 320 |
| XmaI | CCCGGG | 1 cut(s) | 150 |
| XspI | CTAG | 2 cut(s) | 86, 345 |