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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 3 cut(s) | 123, 148, 234 |
| AccIII | TCCGGA | 1 cut(s) | 410 |
| AciI | CCGC | 3 cut(s) | 200, 326, 491 |
| AclWI | GGATC | 1 cut(s) | 471 |
| AcoI | YGGCCR | 1 cut(s) | 306 |
| AcvI | CACGTG | 1 cut(s) | 35 |
| AfaI | GTAC | 1 cut(s) | 256 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 27, 193, 256, 257, 454 |
| AflIII | ACRYGT | 2 cut(s) | 32, 34 |
| AgsI | TTSAA | 1 cut(s) | 488 |
| AluBI | AGCT | 3 cut(s) | 272, 484, 537 |
| AluI | AGCT | 3 cut(s) | 272, 484, 537 |
| Alw21I | GWGCWC | 1 cut(s) | 42 |
| AlwI | GGATC | 1 cut(s) | 471 |
| Ama87I | CYCGRG | 4 cut(s) | 103, 273, 300, 521 |
| Aor13HI | TCCGGA | 1 cut(s) | 410 |
| AoxI | GGCC | 3 cut(s) | 75, 178, 306 |
| ApeKI | GCWGC | 1 cut(s) | 384 |
| AspA2I | CCTAGG | 1 cut(s) | 154 |
| AspLEI | GCGC | 2 cut(s) | 148, 150 |
| AspS9I | GGNCC | 2 cut(s) | 179, 347 |
| AsuC2I | CCSGG | 4 cut(s) | 104, 105, 113, 399 |
| AsuHPI | GGTGA | 1 cut(s) | 505 |
| AvaI | CYCGRG | 4 cut(s) | 103, 273, 300, 521 |
| AvaII | GGWCC | 1 cut(s) | 347 |
| AvrII | CCTAGG | 1 cut(s) | 154 |
| BanII | GRGCYC | 2 cut(s) | 301, 399 |
| BbrPI | CACGTG | 1 cut(s) | 35 |
| BbsI | GAAGAC | 1 cut(s) | 252 |
| Bbv12I | GWGCWC | 1 cut(s) | 42 |
| BbvI | GCAGC | 1 cut(s) | 371 |
| BccI | CCATC | 5 cut(s) | 7, 43, 170, 191, 505 |
| BceAI | ACGGC | 1 cut(s) | 90 |
| BcnI | CCSGG | 4 cut(s) | 104, 105, 113, 399 |
| BfaI | CTAG | 2 cut(s) | 155, 365 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 83 |
| BisI | GCNGC | 1 cut(s) | 385 |
| BlnI | CCTAGG | 1 cut(s) | 154 |
| BlsI | GCNGC | 1 cut(s) | 386 |
| Bme1390I | CCNGG | 4 cut(s) | 104, 105, 113, 399 |
| Bme18I | GGWCC | 1 cut(s) | 347 |
| BmeT110I | CYCGRG | 4 cut(s) | 103, 273, 300, 521 |
| BmgT120I | GGNCC | 2 cut(s) | 179, 347 |
| BmiI | GGNNCC | 3 cut(s) | 110, 181, 403 |
| BmrFI | CCNGG | 4 cut(s) | 104, 105, 113, 399 |
| BmsI | GCATC | 2 cut(s) | 301, 350 |
| BpiI | GAAGAC | 1 cut(s) | 252 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 386, 418 |
| BpuMI | CCSGG | 4 cut(s) | 104, 105, 113, 399 |
| BsaAI | YACGTR | 2 cut(s) | 35, 254 |
| BsaJI | CCNNGG | 6 cut(s) | 102, 103, 104, 112, 154, 388 |
| BsaWI | WCCGGW | 1 cut(s) | 410 |
| BsaXI | ACNNNNNCTCC | 5 cut(s) | 8, 32, 38, 423, 453 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 27, 193, 256, 257, 454 |
| BseAI | TCCGGA | 1 cut(s) | 410 |
| BseDI | CCNNGG | 6 cut(s) | 102, 103, 104, 112, 154, 388 |
| BseGI | GGATG | 2 cut(s) | 54, 183 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 27, 193, 256, 257, 454 |
| BsePI | GCGCGC | 1 cut(s) | 146 |
| BseXI | GCAGC | 1 cut(s) | 371 |
| Bsh1236I | CGCG | 3 cut(s) | 123, 148, 234 |
| BshFI | GGCC | 3 cut(s) | 77, 180, 308 |
| BsiHKAI | GWGCWC | 1 cut(s) | 42 |
| BsiHKCI | CYCGRG | 4 cut(s) | 103, 273, 300, 521 |
| BsiSI | CCGG | 4 cut(s) | 104, 112, 399, 411 |
| BsiWI | CGTACG | 1 cut(s) | 254 |
| BslFI | GGGAC | 1 cut(s) | 84 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 27, 193, 256, 257, 454 |
| BsmFI | GGGAC | 1 cut(s) | 84 |
| BsnI | GGCC | 3 cut(s) | 77, 180, 308 |
| BsoBI | CYCGRG | 4 cut(s) | 103, 273, 300, 521 |
| Bsp1286I | GDGCHC | 3 cut(s) | 42, 301, 399 |
| Bsp13I | TCCGGA | 1 cut(s) | 410 |
| Bsp143I | GATC | 2 cut(s) | 229, 463 |
| Bsp68I | TCGCGA | 1 cut(s) | 123 |
| BspACI | CCGC | 3 cut(s) | 200, 326, 491 |
| BspANI | GGCC | 3 cut(s) | 77, 180, 308 |
| BspEI | TCCGGA | 1 cut(s) | 410 |
| BspFNI | CGCG | 3 cut(s) | 123, 148, 234 |
| BspLI | GGNNCC | 3 cut(s) | 110, 181, 403 |
| BspPI | GGATC | 1 cut(s) | 471 |
| BssECI | CCNNGG | 6 cut(s) | 102, 103, 104, 112, 154, 388 |
| BssHII | GCGCGC | 1 cut(s) | 146 |
| BssMI | GATC | 2 cut(s) | 229, 463 |
| BssT1I | CCWWGG | 2 cut(s) | 154, 388 |
| Bst6I | CTCTTC | 1 cut(s) | 62 |
| BstBAI | YACGTR | 2 cut(s) | 35, 254 |
| BstC8I | GCNNGC | 1 cut(s) | 148 |
| BstEII | GGTNACC | 1 cut(s) | 443 |
| BstF5I | GGATG | 2 cut(s) | 54, 183 |
| BstFNI | CGCG | 3 cut(s) | 123, 148, 234 |
| BstHHI | GCGC | 2 cut(s) | 148, 150 |
| BstKTI | GATC | 2 cut(s) | 232, 466 |
| BstMBI | GATC | 2 cut(s) | 229, 463 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 83, 305 |
| BstPI | GGTNACC | 1 cut(s) | 443 |
| BstSCI | CCNGG | 4 cut(s) | 102, 103, 111, 397 |
| BstUI | CGCG | 3 cut(s) | 123, 148, 234 |
| BstV1I | GCAGC | 1 cut(s) | 371 |
| BstV2I | GAAGAC | 1 cut(s) | 252 |
| BsuRI | GGCC | 3 cut(s) | 77, 180, 308 |
| BtgZI | GCGATG | 2 cut(s) | 138, 373 |
| BtsCI | GGATG | 2 cut(s) | 54, 183 |
| BtuMI | TCGCGA | 1 cut(s) | 123 |
| Cac8I | GCNNGC | 1 cut(s) | 148 |
| CfoI | GCGC | 2 cut(s) | 148, 150 |
| Cfr13I | GGNCC | 2 cut(s) | 179, 347 |
| Cfr9I | CCCGGG | 1 cut(s) | 103 |
| CseI | GACGC | 1 cut(s) | 311 |
| Csp6I | GTAC | 1 cut(s) | 255 |
| CviAII | CATG | 1 cut(s) | 193 |
| CviQI | GTAC | 1 cut(s) | 255 |
| DpnI | GATC | 2 cut(s) | 231, 465 |
| DpnII | GATC | 2 cut(s) | 229, 463 |
| EaeI | YGGCCR | 1 cut(s) | 306 |
| Eam1104I | CTCTTC | 1 cut(s) | 62 |
| EarI | CTCTTC | 1 cut(s) | 62 |
| Eco130I | CCWWGG | 2 cut(s) | 154, 388 |
| Eco24I | GRGCYC | 2 cut(s) | 301, 399 |
| Eco47I | GGWCC | 1 cut(s) | 347 |
| Eco72I | CACGTG | 1 cut(s) | 35 |
| Eco88I | CYCGRG | 4 cut(s) | 103, 273, 300, 521 |
| Eco91I | GGTNACC | 1 cut(s) | 443 |
| EcoO65I | GGTNACC | 1 cut(s) | 443 |
| EcoT14I | CCWWGG | 2 cut(s) | 154, 388 |
| EcoT38I | GRGCYC | 2 cut(s) | 301, 399 |
| ErhI | CCWWGG | 2 cut(s) | 154, 388 |
| FaeI | CATG | 1 cut(s) | 196 |
| FaiI | YATR | 3 cut(s) | 44, 194, 479 |
| FaqI | GGGAC | 1 cut(s) | 84 |
| FatI | CATG | 1 cut(s) | 192 |
| Fnu4HI | GCNGC | 1 cut(s) | 385 |
| FokI | GGATG | 2 cut(s) | 61, 170 |
| FriOI | GRGCYC | 2 cut(s) | 301, 399 |
| Fsp4HI | GCNGC | 1 cut(s) | 385 |
| FspBI | CTAG | 2 cut(s) | 155, 365 |
| GlaI | GCGC | 2 cut(s) | 147, 149 |
| GluI | GCNGC | 1 cut(s) | 385 |
| HaeIII | GGCC | 3 cut(s) | 77, 180, 308 |
| HapII | CCGG | 4 cut(s) | 104, 112, 399, 411 |
| HgaI | GACGC | 1 cut(s) | 311 |
| HhaI | GCGC | 2 cut(s) | 148, 150 |
| Hin1II | CATG | 1 cut(s) | 196 |
| Hin6I | GCGC | 2 cut(s) | 146, 148 |
| HinP1I | GCGC | 2 cut(s) | 146, 148 |
| HinfI | GANTC | 3 cut(s) | 17, 97, 519 |
| HpaII | CCGG | 4 cut(s) | 104, 112, 399, 411 |
| HphI | GGTGA | 1 cut(s) | 505 |
| Hpy166II | GTNNAC | 1 cut(s) | 470 |
| Hpy188I | TCNGA | 3 cut(s) | 22, 30, 96 |
| Hpy188III | TCNNGA | 5 cut(s) | 122, 227, 266, 275, 411 |
| Hpy8I | GTNNAC | 1 cut(s) | 470 |
| HpyAV | CCTTC | 2 cut(s) | 197, 521 |
| HpyCH4IV | ACGT | 2 cut(s) | 34, 253 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 83, 305 |
| HpySE526I | ACGT | 2 cut(s) | 34, 253 |
| Hsp92II | CATG | 1 cut(s) | 196 |
| HspAI | GCGC | 2 cut(s) | 146, 148 |
| Kpn2I | TCCGGA | 1 cut(s) | 410 |
| Kzo9I | GATC | 2 cut(s) | 229, 463 |
| LmnI | GCTCC | 3 cut(s) | 407, 413, 514 |
| LpnPI | CCDG | 4 cut(s) | 117, 125, 412, 424 |
| Lsp1109I | GCAGC | 1 cut(s) | 371 |
| LweI | GCATC | 2 cut(s) | 301, 350 |
| MaeI | CTAG | 2 cut(s) | 155, 365 |
| MaeII | ACGT | 2 cut(s) | 34, 253 |
| MaeIII | GTNAC | 1 cut(s) | 443 |
| MalI | GATC | 2 cut(s) | 231, 465 |
| MboI | GATC | 2 cut(s) | 229, 463 |
| MboII | GAAGA | 3 cut(s) | 79, 81, 257 |
| MhlI | GDGCHC | 3 cut(s) | 42, 301, 399 |
| MlyI | GAGTC | 3 cut(s) | 26, 106, 513 |
| MmeI | TCCRAC | 1 cut(s) | 8 |
| MroI | TCCGGA | 1 cut(s) | 410 |
| MseI | TTAA | 1 cut(s) | 284 |
| MslI | CAYNNNNRTG | 1 cut(s) | 47 |
| MspI | CCGG | 4 cut(s) | 104, 112, 399, 411 |
| MspR9I | CCNGG | 4 cut(s) | 104, 105, 113, 399 |
| MvnI | CGCG | 3 cut(s) | 123, 148, 234 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 83, 305 |
| NciI | CCSGG | 4 cut(s) | 104, 105, 113, 399 |
| NdeII | GATC | 2 cut(s) | 229, 463 |
| NlaIII | CATG | 1 cut(s) | 196 |
| NlaIV | GGNNCC | 3 cut(s) | 110, 181, 403 |
| NruI | TCGCGA | 1 cut(s) | 123 |
| PauI | GCGCGC | 1 cut(s) | 146 |
| Pfl23II | CGTACG | 1 cut(s) | 254 |
| PkrI | GCNGC | 1 cut(s) | 386 |
| PleI | GAGTC | 3 cut(s) | 25, 105, 513 |
| PmaCI | CACGTG | 1 cut(s) | 35 |
| PmlI | CACGTG | 1 cut(s) | 35 |
| PpsI | GAGTC | 3 cut(s) | 25, 105, 513 |
| Ppu21I | YACGTR | 2 cut(s) | 35, 254 |
| PspCI | CACGTG | 1 cut(s) | 35 |
| PspEI | GGTNACC | 1 cut(s) | 443 |
| PspLI | CGTACG | 1 cut(s) | 254 |
| PspN4I | GGNNCC | 3 cut(s) | 110, 181, 403 |
| PspPI | GGNCC | 2 cut(s) | 179, 347 |
| PteI | GCGCGC | 1 cut(s) | 146 |
| RruI | TCGCGA | 1 cut(s) | 123 |
| RsaI | GTAC | 1 cut(s) | 256 |
| RsaNI | GTAC | 1 cut(s) | 255 |
| RseI | CAYNNNNRTG | 1 cut(s) | 47 |
| SaqAI | TTAA | 1 cut(s) | 284 |
| SatI | GCNGC | 1 cut(s) | 385 |
| Sau3AI | GATC | 2 cut(s) | 229, 463 |
| Sau96I | GGNCC | 2 cut(s) | 179, 347 |
| SchI | GAGTC | 3 cut(s) | 26, 106, 513 |
| ScrFI | CCNGG | 4 cut(s) | 104, 105, 113, 399 |
| SduI | GDGCHC | 3 cut(s) | 42, 301, 399 |
| SfaNI | GCATC | 2 cut(s) | 301, 350 |
| SinI | GGWCC | 1 cut(s) | 347 |
| SmaI | CCCGGG | 1 cut(s) | 105 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 47 |
| SsiI | CCGC | 3 cut(s) | 200, 326, 491 |
| SspMI | CTAG | 2 cut(s) | 155, 365 |
| StyD4I | CCNGG | 4 cut(s) | 102, 103, 111, 397 |
| StyI | CCWWGG | 2 cut(s) | 154, 388 |
| TaiI | ACGT | 2 cut(s) | 37, 256 |
| TaqI | TCGA | 3 cut(s) | 56, 62, 243 |
| Tru1I | TTAA | 1 cut(s) | 284 |
| Tru9I | TTAA | 1 cut(s) | 284 |
| TseI | GCWGC | 1 cut(s) | 384 |
| TspGWI | ACGGA | 1 cut(s) | 61 |
| TspMI | CCCGGG | 1 cut(s) | 103 |
| VpaK11BI | GGWCC | 1 cut(s) | 347 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 190 |
| XmaI | CCCGGG | 1 cut(s) | 103 |
| XmaJI | CCTAGG | 1 cut(s) | 154 |
| XspI | CTAG | 2 cut(s) | 155, 365 |