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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 145 |
| AccII | CGCG | 2 cut(s) | 533, 569 |
| AciI | CCGC | 4 cut(s) | 184, 462, 558, 567 |
| AclWI | GGATC | 1 cut(s) | 12 |
| AcuI | CTGAAG | 1 cut(s) | 54 |
| AdeI | CACNNNGTG | 1 cut(s) | 139 |
| AfaI | GTAC | 1 cut(s) | 500 |
| AgsI | TTSAA | 1 cut(s) | 317 |
| AjnI | CCWGG | 1 cut(s) | 518 |
| AluBI | AGCT | 4 cut(s) | 91, 202, 254, 446 |
| AluI | AGCT | 4 cut(s) | 91, 202, 254, 446 |
| Alw21I | GWGCWC | 1 cut(s) | 135 |
| AlwI | GGATC | 1 cut(s) | 12 |
| Ama87I | CYCGRG | 1 cut(s) | 267 |
| AoxI | GGCC | 6 cut(s) | 16, 333, 348, 420, 516, 563 |
| ApeKI | GCWGC | 3 cut(s) | 98, 101, 431 |
| AsiSI | GCGATCGC | 1 cut(s) | 531 |
| AspS9I | GGNCC | 4 cut(s) | 16, 349, 516, 564 |
| AsuC2I | CCSGG | 1 cut(s) | 20 |
| AsuNHI | GCTAGC | 2 cut(s) | 523, 554 |
| AvaI | CYCGRG | 1 cut(s) | 267 |
| BaeGI | GKGCMC | 1 cut(s) | 547 |
| BbsI | GAAGAC | 1 cut(s) | 294 |
| Bbv12I | GWGCWC | 1 cut(s) | 135 |
| BbvI | GCAGC | 3 cut(s) | 85, 88, 443 |
| BccI | CCATC | 1 cut(s) | 362 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 420, 454 |
| BciT130I | CCWGG | 1 cut(s) | 520 |
| BclI | TGATCA | 1 cut(s) | 391 |
| BcnI | CCSGG | 1 cut(s) | 20 |
| BfaI | CTAG | 3 cut(s) | 447, 524, 555 |
| BfuAI | ACCTGC | 1 cut(s) | 145 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 428 |
| BisI | GCNGC | 3 cut(s) | 99, 102, 432 |
| BlpI | GCTNAGC | 1 cut(s) | 255 |
| BlsI | GCNGC | 3 cut(s) | 100, 103, 433 |
| Bme1390I | CCNGG | 2 cut(s) | 20, 520 |
| BmeT110I | CYCGRG | 1 cut(s) | 267 |
| BmgT120I | GGNCC | 4 cut(s) | 16, 349, 516, 564 |
| BmiI | GGNNCC | 1 cut(s) | 17 |
| BmrFI | CCNGG | 2 cut(s) | 20, 520 |
| BmsI | GCATC | 4 cut(s) | 67, 219, 303, 393 |
| BmtI | GCTAGC | 2 cut(s) | 527, 558 |
| BpiI | GAAGAC | 1 cut(s) | 294 |
| BpmI | CTGGAG | 1 cut(s) | 128 |
| Bpu10I | CCTNAGC | 1 cut(s) | 129 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 255 |
| BpuEI | CTTGAG | 1 cut(s) | 224 |
| BpuMI | CCSGG | 1 cut(s) | 20 |
| BsaAI | YACGTR | 1 cut(s) | 136 |
| Bse1I | ACTGG | 3 cut(s) | 273, 381, 555 |
| BseBI | CCWGG | 1 cut(s) | 520 |
| BseGI | GGATG | 1 cut(s) | 349 |
| BseMII | CTCAG | 3 cut(s) | 120, 246, 319 |
| BseNI | ACTGG | 3 cut(s) | 273, 381, 555 |
| BseSI | GKGCMC | 1 cut(s) | 547 |
| BseXI | GCAGC | 3 cut(s) | 85, 88, 443 |
| BseYI | CCCAGC | 1 cut(s) | 473 |
| Bsh1236I | CGCG | 2 cut(s) | 533, 569 |
| Bsh1285I | CGRYCG | 1 cut(s) | 531 |
| BshFI | GGCC | 6 cut(s) | 18, 335, 350, 422, 518, 565 |
| BsiEI | CGRYCG | 1 cut(s) | 531 |
| BsiHKAI | GWGCWC | 1 cut(s) | 135 |
| BsiHKCI | CYCGRG | 1 cut(s) | 267 |
| BsiSI | CCGG | 1 cut(s) | 19 |
| BsnI | GGCC | 6 cut(s) | 18, 335, 350, 422, 518, 565 |
| BsoBI | CYCGRG | 1 cut(s) | 267 |
| Bsp1286I | GDGCHC | 2 cut(s) | 135, 547 |
| Bsp143I | GATC | 5 cut(s) | 4, 308, 391, 437, 528 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 255 |
| Bsp68I | TCGCGA | 1 cut(s) | 533 |
| BspACI | CCGC | 4 cut(s) | 184, 462, 558, 567 |
| BspANI | GGCC | 6 cut(s) | 18, 335, 350, 422, 518, 565 |
| BspCNI | CTCAG | 3 cut(s) | 121, 247, 318 |
| BspFNI | CGCG | 2 cut(s) | 533, 569 |
| BspLI | GGNNCC | 1 cut(s) | 17 |
| BspMI | ACCTGC | 1 cut(s) | 145 |
| BspOI | GCTAGC | 2 cut(s) | 527, 558 |
| BspPI | GGATC | 1 cut(s) | 12 |
| BsrI | ACTGG | 3 cut(s) | 273, 381, 555 |
| BssMI | GATC | 5 cut(s) | 4, 308, 391, 437, 528 |
| Bst2UI | CCWGG | 1 cut(s) | 520 |
| Bst6I | CTCTTC | 1 cut(s) | 30 |
| BstBAI | YACGTR | 1 cut(s) | 136 |
| BstDEI | CTNAG | 3 cut(s) | 129, 255, 305 |
| BstF5I | GGATG | 1 cut(s) | 349 |
| BstFNI | CGCG | 2 cut(s) | 533, 569 |
| BstKTI | GATC | 5 cut(s) | 7, 311, 394, 440, 531 |
| BstMBI | GATC | 5 cut(s) | 4, 308, 391, 437, 528 |
| BstMCI | CGRYCG | 1 cut(s) | 531 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 24, 428, 524, 551 |
| BstNI | CCWGG | 1 cut(s) | 520 |
| BstNSI | RCATGY | 1 cut(s) | 511 |
| BstSCI | CCNGG | 2 cut(s) | 18, 518 |
| BstSLI | GKGCMC | 1 cut(s) | 547 |
| BstUI | CGCG | 2 cut(s) | 533, 569 |
| BstV1I | GCAGC | 3 cut(s) | 85, 88, 443 |
| BstV2I | GAAGAC | 1 cut(s) | 294 |
| BsuRI | GGCC | 6 cut(s) | 18, 335, 350, 422, 518, 565 |
| BtsCI | GGATG | 1 cut(s) | 349 |
| BtsI | GCAGTG | 1 cut(s) | 239 |
| BtsIMutI | CAGTG | 1 cut(s) | 239 |
| BtuMI | TCGCGA | 1 cut(s) | 533 |
| BveI | ACCTGC | 1 cut(s) | 145 |
| Cfr13I | GGNCC | 4 cut(s) | 16, 349, 516, 564 |
| Csp6I | GTAC | 1 cut(s) | 499 |
| CviAII | CATG | 4 cut(s) | 67, 74, 454, 508 |
| CviQI | GTAC | 1 cut(s) | 499 |
| DdeI | CTNAG | 3 cut(s) | 129, 255, 305 |
| DpnI | GATC | 5 cut(s) | 6, 310, 393, 439, 530 |
| DpnII | GATC | 5 cut(s) | 4, 308, 391, 437, 528 |
| DraIII | CACNNNGTG | 1 cut(s) | 139 |
| Eam1104I | CTCTTC | 1 cut(s) | 30 |
| EarI | CTCTTC | 1 cut(s) | 30 |
| Eco147I | AGGCCT | 1 cut(s) | 335 |
| Eco57I | CTGAAG | 1 cut(s) | 54 |
| Eco88I | CYCGRG | 1 cut(s) | 267 |
| EcoO109I | RGGNCCY | 1 cut(s) | 349 |
| EcoRII | CCWGG | 1 cut(s) | 518 |
| FaeI | CATG | 4 cut(s) | 70, 77, 457, 511 |
| FaiI | YATR | 6 cut(s) | 68, 75, 326, 416, 455, 509 |
| FatI | CATG | 4 cut(s) | 66, 73, 453, 507 |
| FauI | CCCGC | 1 cut(s) | 551 |
| FbaI | TGATCA | 1 cut(s) | 391 |
| Fnu4HI | GCNGC | 3 cut(s) | 99, 102, 432 |
| FokI | GGATG | 1 cut(s) | 356 |
| Fsp4HI | GCNGC | 3 cut(s) | 99, 102, 432 |
| FspBI | CTAG | 3 cut(s) | 447, 524, 555 |
| GluI | GCNGC | 3 cut(s) | 99, 102, 432 |
| GsaI | CCCAGC | 1 cut(s) | 477 |
| GsuI | CTGGAG | 1 cut(s) | 128 |
| HaeIII | GGCC | 6 cut(s) | 18, 335, 350, 422, 518, 565 |
| HapII | CCGG | 1 cut(s) | 19 |
| Hin1II | CATG | 4 cut(s) | 70, 77, 457, 511 |
| HincII | GTYRAC | 2 cut(s) | 160, 181 |
| HindII | GTYRAC | 2 cut(s) | 160, 181 |
| HinfI | GANTC | 1 cut(s) | 192 |
| HpaII | CCGG | 1 cut(s) | 19 |
| Hpy166II | GTNNAC | 2 cut(s) | 160, 181 |
| Hpy188I | TCNGA | 3 cut(s) | 308, 343, 365 |
| Hpy188III | TCNNGA | 5 cut(s) | 107, 128, 317, 395, 532 |
| Hpy8I | GTNNAC | 2 cut(s) | 160, 181 |
| HpyAV | CCTTC | 3 cut(s) | 143, 346, 421 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyCH4V | TGCA | 5 cut(s) | 46, 169, 232, 294, 418 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 24, 428, 524, 551 |
| HpyF3I | CTNAG | 3 cut(s) | 129, 255, 305 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92II | CATG | 4 cut(s) | 70, 77, 457, 511 |
| Ksp22I | TGATCA | 1 cut(s) | 391 |
| Kzo9I | GATC | 5 cut(s) | 4, 308, 391, 437, 528 |
| Lsp1109I | GCAGC | 3 cut(s) | 85, 88, 443 |
| LweI | GCATC | 4 cut(s) | 67, 219, 303, 393 |
| MaeI | CTAG | 3 cut(s) | 447, 524, 555 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MalI | GATC | 5 cut(s) | 6, 310, 393, 439, 530 |
| MboI | GATC | 5 cut(s) | 4, 308, 391, 437, 528 |
| MboII | GAAGA | 2 cut(s) | 47, 299 |
| MhlI | GDGCHC | 2 cut(s) | 135, 547 |
| MluCI | AATT | 1 cut(s) | 143 |
| MlyI | GAGTC | 1 cut(s) | 201 |
| MmeI | TCCRAC | 1 cut(s) | 365 |
| MspI | CCGG | 1 cut(s) | 19 |
| MspR9I | CCNGG | 2 cut(s) | 20, 520 |
| MvaI | CCWGG | 1 cut(s) | 520 |
| MvnI | CGCG | 2 cut(s) | 533, 569 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 24, 428, 524, 551 |
| NciI | CCSGG | 1 cut(s) | 20 |
| NdeII | GATC | 5 cut(s) | 4, 308, 391, 437, 528 |
| NheI | GCTAGC | 2 cut(s) | 523, 554 |
| NlaIII | CATG | 4 cut(s) | 70, 77, 457, 511 |
| NlaIV | GGNNCC | 1 cut(s) | 17 |
| NmeAIII | GCCGAG | 1 cut(s) | 106 |
| NruI | TCGCGA | 1 cut(s) | 533 |
| NspI | RCATGY | 1 cut(s) | 511 |
| PceI | AGGCCT | 1 cut(s) | 335 |
| PkrI | GCNGC | 3 cut(s) | 100, 103, 433 |
| Ple19I | CGATCG | 1 cut(s) | 531 |
| PleI | GAGTC | 1 cut(s) | 200 |
| PpsI | GAGTC | 1 cut(s) | 200 |
| Ppu21I | YACGTR | 1 cut(s) | 136 |
| Psp6I | CCWGG | 1 cut(s) | 518 |
| PspFI | CCCAGC | 1 cut(s) | 473 |
| PspGI | CCWGG | 1 cut(s) | 518 |
| PspN4I | GGNNCC | 1 cut(s) | 17 |
| PspPI | GGNCC | 4 cut(s) | 16, 349, 516, 564 |
| PvuI | CGATCG | 1 cut(s) | 531 |
| RgaI | GCGATCGC | 1 cut(s) | 531 |
| RruI | TCGCGA | 1 cut(s) | 533 |
| RsaI | GTAC | 1 cut(s) | 500 |
| RsaNI | GTAC | 1 cut(s) | 499 |
| SatI | GCNGC | 3 cut(s) | 99, 102, 432 |
| Sau3AI | GATC | 5 cut(s) | 4, 308, 391, 437, 528 |
| Sau96I | GGNCC | 4 cut(s) | 16, 349, 516, 564 |
| SchI | GAGTC | 1 cut(s) | 201 |
| ScrFI | CCNGG | 2 cut(s) | 20, 520 |
| SduI | GDGCHC | 2 cut(s) | 135, 547 |
| SetI | ASST | 8 cut(s) | 12, 93, 138, 159, 180, 204, 256, 448 |
| SfaAI | GCGATCGC | 1 cut(s) | 531 |
| SfaNI | GCATC | 4 cut(s) | 67, 219, 303, 393 |
| SgfI | GCGATCGC | 1 cut(s) | 531 |
| SmlI | CTYRAG | 1 cut(s) | 203 |
| SmoI | CTYRAG | 1 cut(s) | 203 |
| Sse9I | AATT | 1 cut(s) | 143 |
| SseBI | AGGCCT | 1 cut(s) | 335 |
| SsiI | CCGC | 4 cut(s) | 184, 462, 558, 567 |
| SspMI | CTAG | 3 cut(s) | 447, 524, 555 |
| StuI | AGGCCT | 1 cut(s) | 335 |
| StyD4I | CCNGG | 2 cut(s) | 18, 518 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TasI | AATT | 1 cut(s) | 143 |
| TscAI | CASTG | 1 cut(s) | 239 |
| TseI | GCWGC | 3 cut(s) | 98, 101, 431 |
| TspDTI | ATGAA | 1 cut(s) | 341 |
| TspRI | CASTG | 1 cut(s) | 239 |
| XceI | RCATGY | 1 cut(s) | 511 |
| XspI | CTAG | 3 cut(s) | 447, 524, 555 |