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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 236 |
| AccB1I | GGYRCC | 3 cut(s) | 162, 380, 431 |
| AciI | CCGC | 4 cut(s) | 229, 479, 570, 599 |
| AcoI | YGGCCR | 1 cut(s) | 491 |
| AcsI | RAATTY | 1 cut(s) | 525 |
| AcyI | GRCGYC | 2 cut(s) | 67, 126 |
| AfaI | GTAC | 3 cut(s) | 115, 520, 594 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 500, 602 |
| AgsI | TTSAA | 2 cut(s) | 263, 358 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 360, 392 |
| Alw21I | GWGCWC | 3 cut(s) | 175, 490, 535 |
| Alw44I | GTGCAC | 1 cut(s) | 486 |
| Ama87I | CYCGRG | 1 cut(s) | 586 |
| AoxI | GGCC | 1 cut(s) | 491 |
| ApaLI | GTGCAC | 1 cut(s) | 486 |
| ApeKI | GCWGC | 2 cut(s) | 92, 201 |
| ApoI | RAATTY | 1 cut(s) | 525 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 372 |
| AspS9I | GGNCC | 3 cut(s) | 395, 510, 567 |
| AsuC2I | CCSGG | 1 cut(s) | 495 |
| AsuHPI | GGTGA | 2 cut(s) | 208, 458 |
| AsuNHI | GCTAGC | 1 cut(s) | 95 |
| AvaI | CYCGRG | 1 cut(s) | 586 |
| AvaII | GGWCC | 3 cut(s) | 395, 510, 567 |
| BaeGI | GKGCMC | 2 cut(s) | 165, 490 |
| BanI | GGYRCC | 3 cut(s) | 162, 380, 431 |
| BbsI | GAAGAC | 1 cut(s) | 351 |
| Bbv12I | GWGCWC | 3 cut(s) | 175, 490, 535 |
| BbvI | GCAGC | 2 cut(s) | 79, 213 |
| BccI | CCATC | 3 cut(s) | 437, 443, 500 |
| BceAI | ACGGC | 4 cut(s) | 189, 323, 506, 559 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 413, 447, 530, 564 |
| BcnI | CCSGG | 1 cut(s) | 495 |
| BfaI | CTAG | 3 cut(s) | 96, 338, 522 |
| BfuAI | ACCTGC | 1 cut(s) | 236 |
| BglII | AGATCT | 1 cut(s) | 270 |
| BisI | GCNGC | 2 cut(s) | 93, 202 |
| BlsI | GCNGC | 2 cut(s) | 94, 203 |
| Bme1390I | CCNGG | 1 cut(s) | 495 |
| Bme18I | GGWCC | 3 cut(s) | 395, 510, 567 |
| BmeT110I | CYCGRG | 1 cut(s) | 586 |
| BmgT120I | GGNCC | 3 cut(s) | 395, 510, 567 |
| BmiI | GGNNCC | 8 cut(s) | 164, 250, 382, 396, 397, 433, 511, 512 |
| BmrFI | CCNGG | 1 cut(s) | 495 |
| BmsI | GCATC | 2 cut(s) | 142, 588 |
| BmtI | GCTAGC | 1 cut(s) | 99 |
| BpiI | GAAGAC | 1 cut(s) | 351 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 169, 201 |
| BpuMI | CCSGG | 1 cut(s) | 495 |
| BsaHI | GRCGYC | 2 cut(s) | 67, 126 |
| BsaJI | CCNNGG | 5 cut(s) | 156, 176, 205, 276, 514 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 500, 602 |
| Bse118I | RCCGGY | 1 cut(s) | 165 |
| BseDI | CCNNGG | 5 cut(s) | 156, 176, 205, 276, 514 |
| BseGI | GGATG | 2 cut(s) | 448, 511 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 500, 602 |
| BseRI | GAGGAG | 1 cut(s) | 296 |
| BseSI | GKGCMC | 2 cut(s) | 165, 490 |
| BseX3I | CGGCCG | 1 cut(s) | 491 |
| BseXI | GCAGC | 2 cut(s) | 79, 213 |
| Bsh1285I | CGRYCG | 1 cut(s) | 494 |
| BshFI | GGCC | 1 cut(s) | 493 |
| BshNI | GGYRCC | 3 cut(s) | 162, 380, 431 |
| BsiEI | CGRYCG | 1 cut(s) | 494 |
| BsiHKAI | GWGCWC | 3 cut(s) | 175, 490, 535 |
| BsiHKCI | CYCGRG | 1 cut(s) | 586 |
| BsiSI | CCGG | 2 cut(s) | 166, 494 |
| BslFI | GGGAC | 2 cut(s) | 381, 523 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 500, 602 |
| BsmFI | GGGAC | 2 cut(s) | 381, 523 |
| BsnI | GGCC | 1 cut(s) | 493 |
| BsoBI | CYCGRG | 1 cut(s) | 586 |
| Bsp1286I | GDGCHC | 4 cut(s) | 165, 175, 490, 535 |
| Bsp143I | GATC | 2 cut(s) | 213, 270 |
| BspACI | CCGC | 4 cut(s) | 229, 479, 570, 599 |
| BspANI | GGCC | 1 cut(s) | 493 |
| BspLI | GGNNCC | 8 cut(s) | 164, 250, 382, 396, 397, 433, 511, 512 |
| BspMI | ACCTGC | 1 cut(s) | 236 |
| BspOI | GCTAGC | 1 cut(s) | 99 |
| BspT107I | GGYRCC | 3 cut(s) | 162, 380, 431 |
| BsrFI | RCCGGY | 1 cut(s) | 165 |
| BssAI | RCCGGY | 1 cut(s) | 165 |
| BssECI | CCNNGG | 5 cut(s) | 156, 176, 205, 276, 514 |
| BssMI | GATC | 2 cut(s) | 213, 270 |
| BssNI | GRCGYC | 2 cut(s) | 67, 126 |
| BssT1I | CCWWGG | 1 cut(s) | 514 |
| Bst4CI | ACNGT | 1 cut(s) | 363 |
| Bst6I | CTCTTC | 1 cut(s) | 26 |
| BstACI | GRCGYC | 2 cut(s) | 67, 126 |
| BstC8I | GCNNGC | 5 cut(s) | 97, 171, 231, 334, 535 |
| BstDEI | CTNAG | 1 cut(s) | 418 |
| BstDSI | CCRYGG | 2 cut(s) | 205, 276 |
| BstF5I | GGATG | 2 cut(s) | 448, 511 |
| BstKTI | GATC | 2 cut(s) | 216, 273 |
| BstMBI | GATC | 2 cut(s) | 213, 270 |
| BstMCI | CGRYCG | 1 cut(s) | 494 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 198, 485, 543 |
| BstNSI | RCATGY | 1 cut(s) | 82 |
| BstSCI | CCNGG | 1 cut(s) | 493 |
| BstSLI | GKGCMC | 2 cut(s) | 165, 490 |
| BstV1I | GCAGC | 2 cut(s) | 79, 213 |
| BstV2I | GAAGAC | 1 cut(s) | 351 |
| BstX2I | RGATCY | 1 cut(s) | 270 |
| BstYI | RGATCY | 1 cut(s) | 270 |
| BstZI | CGGCCG | 1 cut(s) | 491 |
| BsuRI | GGCC | 1 cut(s) | 493 |
| BtgI | CCRYGG | 2 cut(s) | 205, 276 |
| BtsCI | GGATG | 2 cut(s) | 448, 511 |
| BveI | ACCTGC | 1 cut(s) | 236 |
| Cac8I | GCNNGC | 5 cut(s) | 97, 171, 231, 334, 535 |
| Cfr10I | RCCGGY | 1 cut(s) | 165 |
| Cfr13I | GGNCC | 3 cut(s) | 395, 510, 567 |
| CseI | GACGC | 3 cut(s) | 56, 116, 134 |
| Csp6I | GTAC | 3 cut(s) | 114, 519, 593 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 241, 276, 545, 580 |
| CviAII | CATG | 1 cut(s) | 79 |
| CviJI | RGCY | 5 cut(s) | 92, 185, 204, 332, 493 |
| CviKI_1 | RGCY | 5 cut(s) | 92, 185, 204, 332, 493 |
| CviQI | GTAC | 3 cut(s) | 114, 519, 593 |
| DdeI | CTNAG | 1 cut(s) | 418 |
| DpnI | GATC | 2 cut(s) | 215, 272 |
| DpnII | GATC | 2 cut(s) | 213, 270 |
| EaeI | YGGCCR | 1 cut(s) | 491 |
| EagI | CGGCCG | 1 cut(s) | 491 |
| Eam1104I | CTCTTC | 1 cut(s) | 26 |
| EarI | CTCTTC | 1 cut(s) | 26 |
| EclXI | CGGCCG | 1 cut(s) | 491 |
| Eco130I | CCWWGG | 1 cut(s) | 514 |
| Eco32I | GATATC | 1 cut(s) | 388 |
| Eco47I | GGWCC | 3 cut(s) | 395, 510, 567 |
| Eco52I | CGGCCG | 1 cut(s) | 491 |
| Eco88I | CYCGRG | 1 cut(s) | 586 |
| EcoO109I | RGGNCCY | 2 cut(s) | 395, 510 |
| EcoRV | GATATC | 1 cut(s) | 388 |
| EcoT14I | CCWWGG | 1 cut(s) | 514 |
| ErhI | CCWWGG | 1 cut(s) | 514 |
| FaeI | CATG | 1 cut(s) | 82 |
| FaiI | YATR | 2 cut(s) | 52, 80 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 360, 392 |
| FaqI | GGGAC | 2 cut(s) | 381, 523 |
| FatI | CATG | 1 cut(s) | 78 |
| FauI | CCCGC | 2 cut(s) | 222, 606 |
| Fnu4HI | GCNGC | 2 cut(s) | 93, 202 |
| FokI | GGATG | 2 cut(s) | 455, 518 |
| Fsp4HI | GCNGC | 2 cut(s) | 93, 202 |
| FspBI | CTAG | 3 cut(s) | 96, 338, 522 |
| GluI | GCNGC | 2 cut(s) | 93, 202 |
| HaeIII | GGCC | 1 cut(s) | 493 |
| HapII | CCGG | 2 cut(s) | 166, 494 |
| HgaI | GACGC | 3 cut(s) | 56, 116, 134 |
| Hin1I | GRCGYC | 2 cut(s) | 67, 126 |
| Hin1II | CATG | 1 cut(s) | 82 |
| HincII | GTYRAC | 1 cut(s) | 124 |
| HindII | GTYRAC | 1 cut(s) | 124 |
| HpaII | CCGG | 2 cut(s) | 166, 494 |
| HphI | GGTGA | 2 cut(s) | 208, 458 |
| Hpy166II | GTNNAC | 5 cut(s) | 124, 148, 209, 488, 567 |
| Hpy188III | TCNNGA | 2 cut(s) | 149, 588 |
| Hpy8I | GTNNAC | 5 cut(s) | 124, 148, 209, 488, 567 |
| Hpy99I | CGWCG | 3 cut(s) | 309, 440, 545 |
| HpyAV | CCTTC | 1 cut(s) | 362 |
| HpyCH4III | ACNGT | 1 cut(s) | 363 |
| HpyCH4IV | ACGT | 1 cut(s) | 120 |
| HpyCH4V | TGCA | 2 cut(s) | 192, 488 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 198, 485, 543 |
| HpyF3I | CTNAG | 1 cut(s) | 418 |
| HpySE526I | ACGT | 1 cut(s) | 120 |
| Hsp92I | GRCGYC | 2 cut(s) | 67, 126 |
| Hsp92II | CATG | 1 cut(s) | 82 |
| KflI | GGGWCCC | 2 cut(s) | 395, 510 |
| Kzo9I | GATC | 2 cut(s) | 213, 270 |
| LpnPI | CCDG | 5 cut(s) | 179, 231, 392, 507, 537 |
| Lsp1109I | GCAGC | 2 cut(s) | 79, 213 |
| LweI | GCATC | 2 cut(s) | 142, 588 |
| MaeI | CTAG | 3 cut(s) | 96, 338, 522 |
| MaeII | ACGT | 1 cut(s) | 120 |
| MaeIII | GTNAC | 1 cut(s) | 104 |
| MalI | GATC | 2 cut(s) | 215, 272 |
| MboI | GATC | 2 cut(s) | 213, 270 |
| MboII | GAAGA | 2 cut(s) | 43, 356 |
| MflI | RGATCY | 1 cut(s) | 270 |
| MhlI | GDGCHC | 4 cut(s) | 165, 175, 490, 535 |
| MluCI | AATT | 3 cut(s) | 56, 400, 525 |
| MmeI | TCCRAC | 1 cut(s) | 345 |
| MroXI | GAANNNNTTC | 1 cut(s) | 372 |
| MspI | CCGG | 2 cut(s) | 166, 494 |
| MspR9I | CCNGG | 1 cut(s) | 495 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 198, 485, 543 |
| NciI | CCSGG | 1 cut(s) | 495 |
| NdeII | GATC | 2 cut(s) | 213, 270 |
| NheI | GCTAGC | 1 cut(s) | 95 |
| NlaIII | CATG | 1 cut(s) | 82 |
| NlaIV | GGNNCC | 8 cut(s) | 164, 250, 382, 396, 397, 433, 511, 512 |
| NmeAIII | GCCGAG | 1 cut(s) | 181 |
| NmuCI | GTSAC | 1 cut(s) | 104 |
| NspI | RCATGY | 1 cut(s) | 82 |
| PdmI | GAANNNNTTC | 1 cut(s) | 372 |
| PkrI | GCNGC | 2 cut(s) | 94, 203 |
| PpuMI | RGGWCCY | 2 cut(s) | 395, 510 |
| Psp5II | RGGWCCY | 2 cut(s) | 395, 510 |
| PspN4I | GGNNCC | 8 cut(s) | 164, 250, 382, 396, 397, 433, 511, 512 |
| PspPI | GGNCC | 3 cut(s) | 395, 510, 567 |
| PspPPI | RGGWCCY | 2 cut(s) | 395, 510 |
| PsuI | RGATCY | 1 cut(s) | 270 |
| RsaI | GTAC | 3 cut(s) | 115, 520, 594 |
| RsaNI | GTAC | 3 cut(s) | 114, 519, 593 |
| SatI | GCNGC | 2 cut(s) | 93, 202 |
| Sau3AI | GATC | 2 cut(s) | 213, 270 |
| Sau96I | GGNCC | 3 cut(s) | 395, 510, 567 |
| ScrFI | CCNGG | 1 cut(s) | 495 |
| SduI | GDGCHC | 4 cut(s) | 165, 175, 490, 535 |
| SetI | ASST | 7 cut(s) | 123, 198, 250, 373, 414, 477, 520 |
| SfaNI | GCATC | 2 cut(s) | 142, 588 |
| SgrAI | CRCCGGYG | 1 cut(s) | 165 |
| SinI | GGWCC | 3 cut(s) | 395, 510, 567 |
| Sse9I | AATT | 3 cut(s) | 56, 400, 525 |
| SsiI | CCGC | 4 cut(s) | 229, 479, 570, 599 |
| SspMI | CTAG | 3 cut(s) | 96, 338, 522 |
| StyD4I | CCNGG | 1 cut(s) | 493 |
| StyI | CCWWGG | 1 cut(s) | 514 |
| TaaI | ACNGT | 1 cut(s) | 363 |
| TaiI | ACGT | 1 cut(s) | 123 |
| TaqI | TCGA | 3 cut(s) | 390, 423, 471 |
| TasI | AATT | 3 cut(s) | 56, 400, 525 |
| TseFI | GTSAC | 1 cut(s) | 104 |
| TseI | GCWGC | 2 cut(s) | 92, 201 |
| Tsp45I | GTSAC | 1 cut(s) | 104 |
| TspGWI | ACGGA | 2 cut(s) | 131, 265 |
| VneI | GTGCAC | 1 cut(s) | 486 |
| VpaK11BI | GGWCC | 3 cut(s) | 395, 510, 567 |
| XapI | RAATTY | 1 cut(s) | 525 |
| XceI | RCATGY | 1 cut(s) | 82 |
| XmnI | GAANNNNTTC | 1 cut(s) | 372 |
| XspI | CTAG | 3 cut(s) | 96, 338, 522 |