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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 591 |
| AccII | CGCG | 1 cut(s) | 23 |
| AclWI | GGATC | 3 cut(s) | 96, 429, 610 |
| AfaI | GTAC | 3 cut(s) | 633, 722, 735 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 46, 49, 238, 448, 625 |
| AgsI | TTSAA | 1 cut(s) | 254 |
| AjnI | CCWGG | 3 cut(s) | 84, 201, 447 |
| AluBI | AGCT | 7 cut(s) | 139, 250, 302, 327, 382, 625, 656 |
| AluI | AGCT | 7 cut(s) | 139, 250, 302, 327, 382, 625, 656 |
| Alw21I | GWGCWC | 1 cut(s) | 19 |
| Alw26I | GTCTC | 3 cut(s) | 359, 537, 740 |
| AlwI | GGATC | 3 cut(s) | 96, 429, 610 |
| AoxI | GGCC | 6 cut(s) | 33, 147, 199, 390, 552, 695 |
| ApaI | GGGCCC | 1 cut(s) | 699 |
| ApeKI | GCWGC | 3 cut(s) | 106, 356, 359 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 342 |
| AspS9I | GGNCC | 4 cut(s) | 112, 199, 695, 696 |
| AsuC2I | CCSGG | 1 cut(s) | 620 |
| AsuHPI | GGTGA | 2 cut(s) | 671, 698 |
| AvaII | GGWCC | 1 cut(s) | 112 |
| BaeGI | GKGCMC | 1 cut(s) | 699 |
| BanII | GRGCYC | 1 cut(s) | 699 |
| Bbv12I | GWGCWC | 1 cut(s) | 19 |
| BbvI | GCAGC | 3 cut(s) | 118, 343, 346 |
| BccI | CCATC | 3 cut(s) | 271, 470, 529 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 296, 330 |
| BciT130I | CCWGG | 3 cut(s) | 86, 203, 449 |
| BcnI | CCSGG | 1 cut(s) | 620 |
| BcoDI | GTCTC | 3 cut(s) | 359, 537, 740 |
| BfaI | CTAG | 1 cut(s) | 579 |
| BisI | GCNGC | 6 cut(s) | 40, 107, 150, 357, 360, 585 |
| BlpI | GCTNAGC | 1 cut(s) | 303 |
| BlsI | GCNGC | 6 cut(s) | 41, 108, 151, 358, 361, 586 |
| BmcAI | AGTACT | 1 cut(s) | 735 |
| Bme1390I | CCNGG | 4 cut(s) | 86, 203, 449, 620 |
| Bme18I | GGWCC | 1 cut(s) | 112 |
| BmgT120I | GGNCC | 4 cut(s) | 112, 199, 695, 696 |
| BmiI | GGNNCC | 4 cut(s) | 113, 168, 696, 697 |
| BmrFI | CCNGG | 4 cut(s) | 86, 203, 449, 620 |
| BmsI | GCATC | 1 cut(s) | 46 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 151, 183 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 303 |
| BpuMI | CCSGG | 1 cut(s) | 620 |
| BsaBI | GATNNNNATC | 1 cut(s) | 426 |
| BsaJI | CCNNGG | 1 cut(s) | 153 |
| BsaWI | WCCGGW | 1 cut(s) | 432 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 46, 49, 238, 448, 625 |
| Bse1I | ACTGG | 2 cut(s) | 393, 741 |
| Bse8I | GATNNNNATC | 1 cut(s) | 426 |
| BseBI | CCWGG | 3 cut(s) | 86, 203, 449 |
| BseDI | CCNNGG | 1 cut(s) | 153 |
| BseGI | GGATG | 2 cut(s) | 61, 247 |
| BseJI | GATNNNNATC | 1 cut(s) | 426 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 46, 49, 238, 448, 625 |
| BseMII | CTCAG | 3 cut(s) | 294, 301, 590 |
| BseNI | ACTGG | 2 cut(s) | 393, 741 |
| BseRI | GAGGAG | 1 cut(s) | 44 |
| BseSI | GKGCMC | 1 cut(s) | 699 |
| BseXI | GCAGC | 3 cut(s) | 118, 343, 346 |
| Bsh1236I | CGCG | 1 cut(s) | 23 |
| Bsh1285I | CGRYCG | 1 cut(s) | 320 |
| BshFI | GGCC | 6 cut(s) | 35, 149, 201, 392, 554, 697 |
| BsiEI | CGRYCG | 1 cut(s) | 320 |
| BsiHKAI | GWGCWC | 1 cut(s) | 19 |
| BsiSI | CCGG | 2 cut(s) | 433, 619 |
| BslFI | GGGAC | 1 cut(s) | 389 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 46, 49, 238, 448, 625 |
| BsmAI | GTCTC | 3 cut(s) | 359, 537, 740 |
| BsmBI | CGTCTC | 1 cut(s) | 740 |
| BsmFI | GGGAC | 1 cut(s) | 389 |
| BsmI | GAATGC | 2 cut(s) | 342, 344 |
| BsnI | GGCC | 6 cut(s) | 35, 149, 201, 392, 554, 697 |
| Bsp120I | GGGCCC | 1 cut(s) | 695 |
| Bsp1286I | GDGCHC | 2 cut(s) | 19, 699 |
| Bsp143I | GATC | 5 cut(s) | 88, 421, 569, 615, 661 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 303 |
| BspANI | GGCC | 6 cut(s) | 35, 149, 201, 392, 554, 697 |
| BspCNI | CTCAG | 3 cut(s) | 295, 300, 591 |
| BspFNI | CGCG | 1 cut(s) | 23 |
| BspLI | GGNNCC | 4 cut(s) | 113, 168, 696, 697 |
| BspPI | GGATC | 3 cut(s) | 96, 429, 610 |
| BsrBI | CCGCTC | 1 cut(s) | 591 |
| BsrI | ACTGG | 2 cut(s) | 393, 741 |
| BssECI | CCNNGG | 1 cut(s) | 153 |
| BssMI | GATC | 5 cut(s) | 88, 421, 569, 615, 661 |
| BssT1I | CCWWGG | 1 cut(s) | 153 |
| Bst2UI | CCWGG | 3 cut(s) | 86, 203, 449 |
| Bst4CI | ACNGT | 1 cut(s) | 503 |
| BstC8I | GCNNGC | 8 cut(s) | 15, 37, 259, 350, 354, 552, 576, 589 |
| BstDEI | CTNAG | 3 cut(s) | 287, 303, 599 |
| BstF5I | GGATG | 2 cut(s) | 61, 247 |
| BstFNI | CGCG | 1 cut(s) | 23 |
| BstKTI | GATC | 5 cut(s) | 91, 424, 572, 618, 664 |
| BstMAI | GTCTC | 3 cut(s) | 359, 537, 740 |
| BstMBI | GATC | 5 cut(s) | 88, 421, 569, 615, 661 |
| BstMCI | CGRYCG | 1 cut(s) | 320 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 56, 547, 584 |
| BstNI | CCWGG | 3 cut(s) | 86, 203, 449 |
| BstNSI | RCATGY | 1 cut(s) | 550 |
| BstSCI | CCNGG | 4 cut(s) | 84, 201, 447, 618 |
| BstSLI | GKGCMC | 1 cut(s) | 699 |
| BstUI | CGCG | 1 cut(s) | 23 |
| BstV1I | GCAGC | 3 cut(s) | 118, 343, 346 |
| BstX2I | RGATCY | 2 cut(s) | 88, 421 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 184 |
| BstYI | RGATCY | 2 cut(s) | 88, 421 |
| BsuRI | GGCC | 6 cut(s) | 35, 149, 201, 392, 554, 697 |
| BtgZI | GCGATG | 1 cut(s) | 138 |
| BtsCI | GGATG | 2 cut(s) | 61, 247 |
| Cac8I | GCNNGC | 8 cut(s) | 15, 37, 259, 350, 354, 552, 576, 589 |
| Cfr13I | GGNCC | 4 cut(s) | 112, 199, 695, 696 |
| Csp6I | GTAC | 3 cut(s) | 632, 721, 734 |
| CviAII | CATG | 1 cut(s) | 547 |
| CviQI | GTAC | 3 cut(s) | 632, 721, 734 |
| DdeI | CTNAG | 3 cut(s) | 287, 303, 599 |
| DpnI | GATC | 5 cut(s) | 90, 423, 571, 617, 663 |
| DpnII | GATC | 5 cut(s) | 88, 421, 569, 615, 661 |
| EciI | GGCGGA | 2 cut(s) | 65, 422 |
| Eco130I | CCWWGG | 1 cut(s) | 153 |
| Eco147I | AGGCCT | 1 cut(s) | 35 |
| Eco24I | GRGCYC | 1 cut(s) | 699 |
| Eco32I | GATATC | 1 cut(s) | 708 |
| Eco47I | GGWCC | 1 cut(s) | 112 |
| EcoO109I | RGGNCCY | 2 cut(s) | 695, 696 |
| EcoRII | CCWGG | 3 cut(s) | 84, 201, 447 |
| EcoRV | GATATC | 1 cut(s) | 708 |
| EcoT14I | CCWWGG | 1 cut(s) | 153 |
| EcoT22I | ATGCAT | 1 cut(s) | 344 |
| EcoT38I | GRGCYC | 1 cut(s) | 699 |
| ErhI | CCWWGG | 1 cut(s) | 153 |
| Esp3I | CGTCTC | 1 cut(s) | 740 |
| FaeI | CATG | 1 cut(s) | 550 |
| FaiI | YATR | 3 cut(s) | 238, 548, 606 |
| FaqI | GGGAC | 1 cut(s) | 389 |
| FatI | CATG | 1 cut(s) | 546 |
| FauI | CCCGC | 2 cut(s) | 102, 361 |
| Fnu4HI | GCNGC | 6 cut(s) | 40, 107, 150, 357, 360, 585 |
| FokI | GGATG | 2 cut(s) | 68, 254 |
| FriOI | GRGCYC | 1 cut(s) | 699 |
| Fsp4HI | GCNGC | 6 cut(s) | 40, 107, 150, 357, 360, 585 |
| FspBI | CTAG | 1 cut(s) | 579 |
| GluI | GCNGC | 6 cut(s) | 40, 107, 150, 357, 360, 585 |
| HaeIII | GGCC | 6 cut(s) | 35, 149, 201, 392, 554, 697 |
| HapII | CCGG | 2 cut(s) | 433, 619 |
| Hin1II | CATG | 1 cut(s) | 550 |
| HincII | GTYRAC | 1 cut(s) | 229 |
| HindII | GTYRAC | 1 cut(s) | 229 |
| HinfI | GANTC | 3 cut(s) | 211, 285, 313 |
| HpaII | CCGG | 2 cut(s) | 433, 619 |
| HphI | GGTGA | 2 cut(s) | 671, 698 |
| Hpy166II | GTNNAC | 1 cut(s) | 229 |
| Hpy188I | TCNGA | 2 cut(s) | 475, 650 |
| Hpy188III | TCNNGA | 3 cut(s) | 289, 374, 398 |
| Hpy8I | GTNNAC | 1 cut(s) | 229 |
| HpyAV | CCTTC | 3 cut(s) | 113, 242, 286 |
| HpyCH4III | ACNGT | 1 cut(s) | 503 |
| HpyCH4V | TGCA | 5 cut(s) | 106, 217, 342, 487, 550 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 56, 547, 584 |
| HpyF3I | CTNAG | 3 cut(s) | 287, 303, 599 |
| Hsp92II | CATG | 1 cut(s) | 550 |
| Kzo9I | GATC | 5 cut(s) | 88, 421, 569, 615, 661 |
| LmnI | GCTCC | 6 cut(s) | 136, 172, 280, 387, 563, 622 |
| Lsp1109I | GCAGC | 3 cut(s) | 118, 343, 346 |
| LweI | GCATC | 1 cut(s) | 46 |
| MaeI | CTAG | 1 cut(s) | 579 |
| MalI | GATC | 5 cut(s) | 90, 423, 571, 617, 663 |
| MbiI | CCGCTC | 1 cut(s) | 591 |
| MboI | GATC | 5 cut(s) | 88, 421, 569, 615, 661 |
| MboII | GAAGA | 2 cut(s) | 466, 544 |
| MflI | RGATCY | 2 cut(s) | 88, 421 |
| MhlI | GDGCHC | 2 cut(s) | 19, 699 |
| MluCI | AATT | 1 cut(s) | 5 |
| MlyI | GAGTC | 2 cut(s) | 279, 307 |
| MmeI | TCCRAC | 1 cut(s) | 114 |
| Mph1103I | ATGCAT | 1 cut(s) | 344 |
| MroXI | GAANNNNTTC | 1 cut(s) | 342 |
| MseI | TTAA | 1 cut(s) | 495 |
| MspA1I | CMGCKG | 2 cut(s) | 109, 356 |
| MspI | CCGG | 2 cut(s) | 433, 619 |
| MspR9I | CCNGG | 4 cut(s) | 86, 203, 449, 620 |
| Mva1269I | GAATGC | 2 cut(s) | 342, 344 |
| MvaI | CCWGG | 3 cut(s) | 86, 203, 449 |
| MvnI | CGCG | 1 cut(s) | 23 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 56, 547, 584 |
| NciI | CCSGG | 1 cut(s) | 620 |
| NdeII | GATC | 5 cut(s) | 88, 421, 569, 615, 661 |
| NlaIII | CATG | 1 cut(s) | 550 |
| NlaIV | GGNNCC | 4 cut(s) | 113, 168, 696, 697 |
| NmeAIII | GCCGAG | 1 cut(s) | 388 |
| NsiI | ATGCAT | 1 cut(s) | 344 |
| NspI | RCATGY | 1 cut(s) | 550 |
| PceI | AGGCCT | 1 cut(s) | 35 |
| PctI | GAATGC | 2 cut(s) | 342, 344 |
| PdmI | GAANNNNTTC | 1 cut(s) | 342 |
| PfeI | GAWTC | 1 cut(s) | 211 |
| PflFI | GACNNNGTC | 1 cut(s) | 316 |
| PfoI | TCCNGGA | 2 cut(s) | 447, 618 |
| PkrI | GCNGC | 6 cut(s) | 41, 108, 151, 358, 361, 586 |
| PleI | GAGTC | 2 cut(s) | 279, 307 |
| PpsI | GAGTC | 2 cut(s) | 279, 307 |
| Psp6I | CCWGG | 3 cut(s) | 84, 201, 447 |
| PspGI | CCWGG | 3 cut(s) | 84, 201, 447 |
| PspN4I | GGNNCC | 4 cut(s) | 113, 168, 696, 697 |
| PspOMI | GGGCCC | 1 cut(s) | 695 |
| PspPI | GGNCC | 4 cut(s) | 112, 199, 695, 696 |
| PsuI | RGATCY | 2 cut(s) | 88, 421 |
| PsyI | GACNNNGTC | 1 cut(s) | 316 |
| RsaI | GTAC | 3 cut(s) | 633, 722, 735 |
| RsaNI | GTAC | 3 cut(s) | 632, 721, 734 |
| SaqAI | TTAA | 1 cut(s) | 495 |
| SatI | GCNGC | 6 cut(s) | 40, 107, 150, 357, 360, 585 |
| Sau3AI | GATC | 5 cut(s) | 88, 421, 569, 615, 661 |
| Sau96I | GGNCC | 4 cut(s) | 112, 199, 695, 696 |
| ScaI | AGTACT | 1 cut(s) | 735 |
| SchI | GAGTC | 2 cut(s) | 279, 307 |
| ScrFI | CCNGG | 4 cut(s) | 86, 203, 449, 620 |
| SduI | GDGCHC | 2 cut(s) | 19, 699 |
| SfaNI | GCATC | 1 cut(s) | 46 |
| SinI | GGWCC | 1 cut(s) | 112 |
| Sse9I | AATT | 1 cut(s) | 5 |
| SseBI | AGGCCT | 1 cut(s) | 35 |
| SspMI | CTAG | 1 cut(s) | 579 |
| StuI | AGGCCT | 1 cut(s) | 35 |
| StyD4I | CCNGG | 4 cut(s) | 84, 201, 447, 618 |
| StyI | CCWWGG | 1 cut(s) | 153 |
| TaaI | ACNGT | 1 cut(s) | 503 |
| TaqI | TCGA | 3 cut(s) | 246, 320, 491 |
| TaqII | GACCGA | 1 cut(s) | 306 |
| TasI | AATT | 1 cut(s) | 5 |
| TatI | WGTACW | 1 cut(s) | 733 |
| TauI | GCSGC | 3 cut(s) | 42, 152, 587 |
| TfiI | GAWTC | 1 cut(s) | 211 |
| Tru1I | TTAA | 1 cut(s) | 495 |
| Tru9I | TTAA | 1 cut(s) | 495 |
| TseI | GCWGC | 3 cut(s) | 106, 356, 359 |
| TspDTI | ATGAA | 1 cut(s) | 473 |
| TspGWI | ACGGA | 1 cut(s) | 57 |
| Tth111I | GACNNNGTC | 1 cut(s) | 316 |
| VpaK11BI | GGWCC | 1 cut(s) | 112 |
| XceI | RCATGY | 1 cut(s) | 550 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 184 |
| XmnI | GAANNNNTTC | 1 cut(s) | 342 |
| XspI | CTAG | 1 cut(s) | 579 |
| ZrmI | AGTACT | 1 cut(s) | 735 |
| Zsp2I | ATGCAT | 1 cut(s) | 344 |