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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 193 |
| AccII | CGCG | 1 cut(s) | 430 |
| AciI | CCGC | 5 cut(s) | 137, 174, 258, 428, 430 |
| AclWI | GGATC | 1 cut(s) | 372 |
| AcyI | GRCGYC | 1 cut(s) | 20 |
| AfaI | GTAC | 2 cut(s) | 27, 87 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 102, 319 |
| AflIII | ACRYGT | 1 cut(s) | 88 |
| AjiI | CACGTC | 1 cut(s) | 376 |
| AluBI | AGCT | 2 cut(s) | 279, 462 |
| AluI | AGCT | 2 cut(s) | 279, 462 |
| Alw21I | GWGCWC | 1 cut(s) | 222 |
| Alw26I | GTCTC | 1 cut(s) | 309 |
| AlwI | GGATC | 1 cut(s) | 372 |
| Ama87I | CYCGRG | 4 cut(s) | 221, 312, 319, 381 |
| AoxI | GGCC | 1 cut(s) | 384 |
| ApeKI | GCWGC | 1 cut(s) | 249 |
| AspS9I | GGNCC | 1 cut(s) | 384 |
| AsuHPI | GGTGA | 3 cut(s) | 118, 277, 383 |
| AvaI | CYCGRG | 4 cut(s) | 221, 312, 319, 381 |
| BanI | GGYRCC | 1 cut(s) | 193 |
| BanII | GRGCYC | 1 cut(s) | 396 |
| Bbv12I | GWGCWC | 1 cut(s) | 222 |
| BbvI | GCAGC | 1 cut(s) | 261 |
| BceAI | ACGGC | 2 cut(s) | 124, 136 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 193, 227 |
| BciVI | GTATCC | 1 cut(s) | 144 |
| BcoDI | GTCTC | 1 cut(s) | 309 |
| BfaI | CTAG | 2 cut(s) | 8, 532 |
| BfuI | GTATCC | 1 cut(s) | 144 |
| BglII | AGATCT | 1 cut(s) | 411 |
| BisI | GCNGC | 2 cut(s) | 250, 428 |
| BlsI | GCNGC | 2 cut(s) | 251, 429 |
| BmeT110I | CYCGRG | 4 cut(s) | 221, 312, 319, 381 |
| BmgBI | CACGTC | 1 cut(s) | 376 |
| BmgT120I | GGNCC | 1 cut(s) | 384 |
| BmiI | GGNNCC | 7 cut(s) | 195, 227, 310, 393, 426, 499, 527 |
| BmsI | GCATC | 3 cut(s) | 35, 138, 228 |
| Bpu10I | CCTNAGC | 1 cut(s) | 179 |
| BpuEI | CTTGAG | 1 cut(s) | 218 |
| BsaAI | YACGTR | 1 cut(s) | 89 |
| BsaBI | GATNNNNATC | 1 cut(s) | 37 |
| BsaHI | GRCGYC | 1 cut(s) | 20 |
| BsaJI | CCNNGG | 6 cut(s) | 197, 242, 387, 396, 428, 513 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 102, 319 |
| Bse118I | RCCGGY | 1 cut(s) | 190 |
| Bse8I | GATNNNNATC | 1 cut(s) | 37 |
| BseDI | CCNNGG | 6 cut(s) | 197, 242, 387, 396, 428, 513 |
| BseGI | GGATG | 1 cut(s) | 493 |
| BseJI | GATNNNNATC | 1 cut(s) | 37 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 102, 319 |
| BseRI | GAGGAG | 1 cut(s) | 437 |
| BseXI | GCAGC | 1 cut(s) | 261 |
| Bsh1236I | CGCG | 1 cut(s) | 430 |
| BshFI | GGCC | 1 cut(s) | 386 |
| BshNI | GGYRCC | 1 cut(s) | 193 |
| BsiHKAI | GWGCWC | 1 cut(s) | 222 |
| BsiHKCI | CYCGRG | 4 cut(s) | 221, 312, 319, 381 |
| BsiSI | CCGG | 2 cut(s) | 157, 191 |
| BsiWI | CGTACG | 1 cut(s) | 25 |
| BslFI | GGGAC | 1 cut(s) | 495 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 102, 319 |
| BsmAI | GTCTC | 1 cut(s) | 309 |
| BsmFI | GGGAC | 1 cut(s) | 495 |
| BsnI | GGCC | 1 cut(s) | 386 |
| BsoBI | CYCGRG | 4 cut(s) | 221, 312, 319, 381 |
| Bsp1286I | GDGCHC | 2 cut(s) | 222, 396 |
| Bsp143I | GATC | 3 cut(s) | 97, 364, 411 |
| BspACI | CCGC | 5 cut(s) | 137, 174, 258, 428, 430 |
| BspANI | GGCC | 1 cut(s) | 386 |
| BspFNI | CGCG | 1 cut(s) | 430 |
| BspLI | GGNNCC | 7 cut(s) | 195, 227, 310, 393, 426, 499, 527 |
| BspPI | GGATC | 1 cut(s) | 372 |
| BspT107I | GGYRCC | 1 cut(s) | 193 |
| BsrFI | RCCGGY | 1 cut(s) | 190 |
| BssAI | RCCGGY | 1 cut(s) | 190 |
| BssECI | CCNNGG | 6 cut(s) | 197, 242, 387, 396, 428, 513 |
| BssMI | GATC | 3 cut(s) | 97, 364, 411 |
| BssNI | GRCGYC | 1 cut(s) | 20 |
| BssT1I | CCWWGG | 3 cut(s) | 242, 387, 513 |
| Bst4CI | ACNGT | 2 cut(s) | 85, 400 |
| BstACI | GRCGYC | 1 cut(s) | 20 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 255 |
| BstBAI | YACGTR | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 3 cut(s) | 176, 260, 277 |
| BstDEI | CTNAG | 1 cut(s) | 179 |
| BstDSI | CCRYGG | 2 cut(s) | 396, 428 |
| BstF5I | GGATG | 1 cut(s) | 493 |
| BstFNI | CGCG | 1 cut(s) | 430 |
| BstKTI | GATC | 3 cut(s) | 100, 367, 414 |
| BstMAI | GTCTC | 1 cut(s) | 309 |
| BstMBI | GATC | 3 cut(s) | 97, 364, 411 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 74, 255 |
| BstUI | CGCG | 1 cut(s) | 430 |
| BstV1I | GCAGC | 1 cut(s) | 261 |
| BstX2I | RGATCY | 2 cut(s) | 364, 411 |
| BstYI | RGATCY | 2 cut(s) | 364, 411 |
| BsuI | GTATCC | 1 cut(s) | 144 |
| BsuRI | GGCC | 1 cut(s) | 386 |
| BtgI | CCRYGG | 2 cut(s) | 396, 428 |
| BtrI | CACGTC | 1 cut(s) | 376 |
| BtsCI | GGATG | 1 cut(s) | 493 |
| BtsI | GCAGTG | 1 cut(s) | 222 |
| BtsIMutI | CAGTG | 1 cut(s) | 222 |
| Cac8I | GCNNGC | 3 cut(s) | 176, 260, 277 |
| Cfr10I | RCCGGY | 1 cut(s) | 190 |
| Cfr13I | GGNCC | 1 cut(s) | 384 |
| Cfr42I | CCGCGG | 1 cut(s) | 431 |
| CseI | GACGC | 2 cut(s) | 28, 292 |
| Csp6I | GTAC | 2 cut(s) | 26, 86 |
| CviAII | CATG | 1 cut(s) | 205 |
| CviQI | GTAC | 2 cut(s) | 26, 86 |
| DdeI | CTNAG | 1 cut(s) | 179 |
| DpnI | GATC | 3 cut(s) | 99, 366, 413 |
| DpnII | GATC | 3 cut(s) | 97, 364, 411 |
| EciI | GGCGGA | 1 cut(s) | 126 |
| Eco130I | CCWWGG | 3 cut(s) | 242, 387, 513 |
| Eco24I | GRGCYC | 1 cut(s) | 396 |
| Eco88I | CYCGRG | 4 cut(s) | 221, 312, 319, 381 |
| EcoT14I | CCWWGG | 3 cut(s) | 242, 387, 513 |
| EcoT38I | GRGCYC | 1 cut(s) | 396 |
| ErhI | CCWWGG | 3 cut(s) | 242, 387, 513 |
| FaeI | CATG | 1 cut(s) | 208 |
| FaiI | YATR | 4 cut(s) | 113, 206, 256, 507 |
| FaqI | GGGAC | 1 cut(s) | 495 |
| FatI | CATG | 1 cut(s) | 204 |
| FauI | CCCGC | 3 cut(s) | 167, 251, 423 |
| Fnu4HI | GCNGC | 2 cut(s) | 250, 428 |
| FokI | GGATG | 1 cut(s) | 500 |
| FriOI | GRGCYC | 1 cut(s) | 396 |
| Fsp4HI | GCNGC | 2 cut(s) | 250, 428 |
| FspBI | CTAG | 2 cut(s) | 8, 532 |
| GluI | GCNGC | 2 cut(s) | 250, 428 |
| HaeIII | GGCC | 1 cut(s) | 386 |
| HapII | CCGG | 2 cut(s) | 157, 191 |
| HgaI | GACGC | 2 cut(s) | 28, 292 |
| Hin1I | GRCGYC | 1 cut(s) | 20 |
| Hin1II | CATG | 1 cut(s) | 208 |
| HinfI | GANTC | 3 cut(s) | 72, 231, 317 |
| HpaII | CCGG | 2 cut(s) | 157, 191 |
| HphI | GGTGA | 3 cut(s) | 118, 277, 383 |
| Hpy166II | GTNNAC | 1 cut(s) | 297 |
| Hpy188I | TCNGA | 1 cut(s) | 525 |
| Hpy188III | TCNNGA | 6 cut(s) | 42, 223, 235, 312, 321, 501 |
| Hpy8I | GTNNAC | 1 cut(s) | 297 |
| Hpy99I | CGWCG | 3 cut(s) | 121, 308, 422 |
| HpyAV | CCTTC | 1 cut(s) | 430 |
| HpyCH4III | ACNGT | 2 cut(s) | 85, 400 |
| HpyCH4IV | ACGT | 2 cut(s) | 88, 375 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 74, 255 |
| HpyF3I | CTNAG | 1 cut(s) | 179 |
| HpySE526I | ACGT | 2 cut(s) | 88, 375 |
| Hsp92I | GRCGYC | 1 cut(s) | 20 |
| Hsp92II | CATG | 1 cut(s) | 208 |
| KspI | CCGCGG | 1 cut(s) | 431 |
| Kzo9I | GATC | 3 cut(s) | 97, 364, 411 |
| LmnI | GCTCC | 5 cut(s) | 225, 246, 391, 424, 459 |
| LpnPI | CCDG | 6 cut(s) | 170, 204, 248, 271, 340, 356 |
| Lsp1109I | GCAGC | 1 cut(s) | 261 |
| LweI | GCATC | 3 cut(s) | 35, 138, 228 |
| MaeI | CTAG | 2 cut(s) | 8, 532 |
| MaeII | ACGT | 2 cut(s) | 88, 375 |
| MaeIII | GTNAC | 4 cut(s) | 16, 91, 326, 371 |
| MalI | GATC | 3 cut(s) | 99, 366, 413 |
| MboI | GATC | 3 cut(s) | 97, 364, 411 |
| MboII | GAAGA | 1 cut(s) | 196 |
| MflI | RGATCY | 2 cut(s) | 364, 411 |
| MhlI | GDGCHC | 2 cut(s) | 222, 396 |
| MlyI | GAGTC | 2 cut(s) | 225, 311 |
| MnlI | CCTC | 7 cut(s) | 192, 201, 325, 351, 355, 397, 415 |
| MspA1I | CMGCKG | 1 cut(s) | 430 |
| MspI | CCGG | 2 cut(s) | 157, 191 |
| MvnI | CGCG | 1 cut(s) | 430 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 74, 255 |
| NdeII | GATC | 3 cut(s) | 97, 364, 411 |
| NlaIII | CATG | 1 cut(s) | 208 |
| NlaIV | GGNNCC | 7 cut(s) | 195, 227, 310, 393, 426, 499, 527 |
| NmeAIII | GCCGAG | 1 cut(s) | 222 |
| NmuCI | GTSAC | 4 cut(s) | 16, 91, 326, 371 |
| PfeI | GAWTC | 1 cut(s) | 72 |
| Pfl23II | CGTACG | 1 cut(s) | 25 |
| PkrI | GCNGC | 2 cut(s) | 251, 429 |
| PleI | GAGTC | 2 cut(s) | 225, 311 |
| PpsI | GAGTC | 2 cut(s) | 225, 311 |
| Ppu21I | YACGTR | 1 cut(s) | 89 |
| PspLI | CGTACG | 1 cut(s) | 25 |
| PspN4I | GGNNCC | 7 cut(s) | 195, 227, 310, 393, 426, 499, 527 |
| PspPI | GGNCC | 1 cut(s) | 384 |
| PsuI | RGATCY | 2 cut(s) | 364, 411 |
| RsaI | GTAC | 2 cut(s) | 27, 87 |
| RsaNI | GTAC | 2 cut(s) | 26, 86 |
| SacII | CCGCGG | 1 cut(s) | 431 |
| SatI | GCNGC | 2 cut(s) | 250, 428 |
| Sau3AI | GATC | 3 cut(s) | 97, 364, 411 |
| Sau96I | GGNCC | 1 cut(s) | 384 |
| SchI | GAGTC | 2 cut(s) | 225, 311 |
| SduI | GDGCHC | 2 cut(s) | 222, 396 |
| SetI | ASST | 8 cut(s) | 91, 212, 281, 290, 378, 408, 441, 464 |
| SfaNI | GCATC | 3 cut(s) | 35, 138, 228 |
| Sfr303I | CCGCGG | 1 cut(s) | 431 |
| SgrBI | CCGCGG | 1 cut(s) | 431 |
| SmlI | CTYRAG | 1 cut(s) | 233 |
| SmoI | CTYRAG | 1 cut(s) | 233 |
| SsiI | CCGC | 5 cut(s) | 137, 174, 258, 428, 430 |
| SspMI | CTAG | 2 cut(s) | 8, 532 |
| StyI | CCWWGG | 3 cut(s) | 242, 387, 513 |
| TaaI | ACNGT | 2 cut(s) | 85, 400 |
| TaiI | ACGT | 2 cut(s) | 91, 378 |
| TaqI | TCGA | 4 cut(s) | 123, 146, 420, 479 |
| TaqII | GACCGA | 1 cut(s) | 110 |
| TauI | GCSGC | 1 cut(s) | 430 |
| TfiI | GAWTC | 1 cut(s) | 72 |
| TscAI | CASTG | 1 cut(s) | 222 |
| TseFI | GTSAC | 4 cut(s) | 16, 91, 326, 371 |
| TseI | GCWGC | 1 cut(s) | 249 |
| Tsp45I | GTSAC | 4 cut(s) | 16, 91, 326, 371 |
| TspDTI | ATGAA | 1 cut(s) | 459 |
| TspGWI | ACGGA | 1 cut(s) | 406 |
| TspRI | CASTG | 1 cut(s) | 222 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 403 |
| XspI | CTAG | 2 cut(s) | 8, 532 |