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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 875 |
| Acc36I | ACCTGC | 1 cut(s) | 875 |
| AccII | CGCG | 1 cut(s) | 272 |
| AciI | CCGC | 4 cut(s) | 270, 551, 707, 786 |
| AclWI | GGATC | 1 cut(s) | 408 |
| AcoI | YGGCCR | 1 cut(s) | 328 |
| AcuI | CTGAAG | 1 cut(s) | 299 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 376, 499 |
| AgsI | TTSAA | 6 cut(s) | 12, 217, 250, 467, 848, 879 |
| AjnI | CCWGG | 1 cut(s) | 498 |
| AleI | CACNNNNGTG | 1 cut(s) | 679 |
| Alw21I | GWGCWC | 2 cut(s) | 523, 537 |
| AlwI | GGATC | 1 cut(s) | 408 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 457, 737 |
| Ama87I | CYCGRG | 1 cut(s) | 538 |
| AoxI | GGCC | 1 cut(s) | 328 |
| AspS9I | GGNCC | 1 cut(s) | 96 |
| AsuC2I | CCSGG | 1 cut(s) | 94 |
| AsuHPI | GGTGA | 2 cut(s) | 679, 899 |
| AvaI | CYCGRG | 1 cut(s) | 538 |
| AvaII | GGWCC | 1 cut(s) | 96 |
| BalI | TGGCCA | 1 cut(s) | 330 |
| BanII | GRGCYC | 1 cut(s) | 537 |
| BauI | CACGAG | 1 cut(s) | 516 |
| Bbv12I | GWGCWC | 2 cut(s) | 523, 537 |
| BbvCI | CCTCAGC | 3 cut(s) | 288, 422, 485 |
| BccI | CCATC | 1 cut(s) | 320 |
| BciT130I | CCWGG | 1 cut(s) | 500 |
| BcnI | CCSGG | 1 cut(s) | 94 |
| BfaI | CTAG | 1 cut(s) | 807 |
| BfmI | CTRYAG | 1 cut(s) | 458 |
| BfuAI | ACCTGC | 1 cut(s) | 875 |
| BlpI | GCTNAGC | 1 cut(s) | 450 |
| Bme1390I | CCNGG | 2 cut(s) | 94, 500 |
| Bme18I | GGWCC | 1 cut(s) | 96 |
| BmeT110I | CYCGRG | 1 cut(s) | 538 |
| BmgT120I | GGNCC | 1 cut(s) | 96 |
| BmiI | GGNNCC | 2 cut(s) | 97, 491 |
| BmrFI | CCNGG | 2 cut(s) | 94, 500 |
| BmsI | GCATC | 3 cut(s) | 13, 187, 880 |
| BpmI | CTGGAG | 1 cut(s) | 494 |
| Bpu10I | CCTNAGC | 4 cut(s) | 288, 422, 485, 522 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 450 |
| BpuMI | CCSGG | 1 cut(s) | 94 |
| Bsa29I | ATCGAT | 2 cut(s) | 110, 812 |
| BsaBI | GATNNNNATC | 1 cut(s) | 399 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 376, 499 |
| Bse118I | RCCGGY | 2 cut(s) | 317, 604 |
| Bse1I | ACTGG | 4 cut(s) | 120, 145, 198, 642 |
| Bse8I | GATNNNNATC | 1 cut(s) | 399 |
| BseBI | CCWGG | 1 cut(s) | 500 |
| BseCI | ATCGAT | 2 cut(s) | 110, 812 |
| BseGI | GGATG | 3 cut(s) | 202, 715, 877 |
| BseJI | GATNNNNATC | 1 cut(s) | 399 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 376, 499 |
| BseMII | CTCAG | 8 cut(s) | 166, 279, 399, 413, 464, 476, 536, 606 |
| BseNI | ACTGG | 4 cut(s) | 120, 145, 198, 642 |
| BseRI | GAGGAG | 2 cut(s) | 392, 491 |
| BseYI | CCCAGC | 1 cut(s) | 802 |
| BsgI | GTGCAG | 1 cut(s) | 257 |
| Bsh1236I | CGCG | 1 cut(s) | 272 |
| Bsh1285I | CGRYCG | 1 cut(s) | 786 |
| BshFI | GGCC | 1 cut(s) | 330 |
| BshVI | ATCGAT | 2 cut(s) | 110, 812 |
| BsiEI | CGRYCG | 1 cut(s) | 786 |
| BsiHKAI | GWGCWC | 2 cut(s) | 523, 537 |
| BsiHKCI | CYCGRG | 1 cut(s) | 538 |
| BsiSI | CCGG | 3 cut(s) | 93, 318, 605 |
| BslFI | GGGAC | 3 cut(s) | 109, 524, 583 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 376, 499 |
| BsmFI | GGGAC | 3 cut(s) | 109, 524, 583 |
| BsnI | GGCC | 1 cut(s) | 330 |
| BsoBI | CYCGRG | 1 cut(s) | 538 |
| Bsp1286I | GDGCHC | 2 cut(s) | 523, 537 |
| Bsp143I | GATC | 5 cut(s) | 58, 162, 400, 504, 809 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 450 |
| BspACI | CCGC | 4 cut(s) | 270, 551, 707, 786 |
| BspANI | GGCC | 1 cut(s) | 330 |
| BspCNI | CTCAG | 8 cut(s) | 165, 280, 400, 414, 463, 477, 535, 607 |
| BspDI | ATCGAT | 2 cut(s) | 110, 812 |
| BspFNI | CGCG | 1 cut(s) | 272 |
| BspLI | GGNNCC | 2 cut(s) | 97, 491 |
| BspMAI | CTGCAG | 1 cut(s) | 462 |
| BspMI | ACCTGC | 1 cut(s) | 875 |
| BspPI | GGATC | 1 cut(s) | 408 |
| BsrFI | RCCGGY | 2 cut(s) | 317, 604 |
| BsrI | ACTGG | 4 cut(s) | 120, 145, 198, 642 |
| BssAI | RCCGGY | 2 cut(s) | 317, 604 |
| BssMI | GATC | 5 cut(s) | 58, 162, 400, 504, 809 |
| BssSI | CACGAG | 1 cut(s) | 516 |
| Bst2BI | CACGAG | 1 cut(s) | 516 |
| Bst2UI | CCWGG | 1 cut(s) | 500 |
| Bst4CI | ACNGT | 3 cut(s) | 235, 574, 823 |
| Bst6I | CTCTTC | 2 cut(s) | 339, 369 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 23, 638, 890 |
| BstC8I | GCNNGC | 6 cut(s) | 85, 186, 285, 389, 606, 770 |
| BstDEI | CTNAG | 8 cut(s) | 152, 288, 408, 422, 450, 485, 522, 615 |
| BstF5I | GGATG | 3 cut(s) | 202, 715, 877 |
| BstFNI | CGCG | 1 cut(s) | 272 |
| BstKTI | GATC | 5 cut(s) | 61, 165, 403, 507, 812 |
| BstMBI | GATC | 5 cut(s) | 58, 162, 400, 504, 809 |
| BstMCI | CGRYCG | 1 cut(s) | 786 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 23, 293, 460, 638, 728, 743, 788, 890 |
| BstNI | CCWGG | 1 cut(s) | 500 |
| BstSCI | CCNGG | 2 cut(s) | 92, 498 |
| BstSFI | CTRYAG | 1 cut(s) | 458 |
| BstUI | CGCG | 1 cut(s) | 272 |
| BstX2I | RGATCY | 1 cut(s) | 400 |
| BstYI | RGATCY | 1 cut(s) | 400 |
| Bsu15I | ATCGAT | 2 cut(s) | 110, 812 |
| BsuRI | GGCC | 1 cut(s) | 330 |
| BsuTUI | ATCGAT | 2 cut(s) | 110, 812 |
| BtsCI | GGATG | 3 cut(s) | 202, 715, 877 |
| BtsIMutI | CAGTG | 2 cut(s) | 423, 828 |
| BveI | ACCTGC | 1 cut(s) | 875 |
| Cac8I | GCNNGC | 6 cut(s) | 85, 186, 285, 389, 606, 770 |
| CaiI | CAGNNNCTG | 2 cut(s) | 457, 737 |
| Cfr10I | RCCGGY | 2 cut(s) | 317, 604 |
| Cfr13I | GGNCC | 1 cut(s) | 96 |
| ClaI | ATCGAT | 2 cut(s) | 110, 812 |
| CviAII | CATG | 3 cut(s) | 127, 578, 773 |
| DdeI | CTNAG | 8 cut(s) | 152, 288, 408, 422, 450, 485, 522, 615 |
| DpnI | GATC | 5 cut(s) | 60, 164, 402, 506, 811 |
| DpnII | GATC | 5 cut(s) | 58, 162, 400, 504, 809 |
| EaeI | YGGCCR | 1 cut(s) | 328 |
| Eam1104I | CTCTTC | 2 cut(s) | 339, 369 |
| EarI | CTCTTC | 2 cut(s) | 339, 369 |
| EciI | GGCGGA | 1 cut(s) | 722 |
| Ecl136II | GAGCTC | 1 cut(s) | 535 |
| Eco24I | GRGCYC | 1 cut(s) | 537 |
| Eco47I | GGWCC | 1 cut(s) | 96 |
| Eco53kI | GAGCTC | 1 cut(s) | 535 |
| Eco57I | CTGAAG | 1 cut(s) | 299 |
| Eco88I | CYCGRG | 1 cut(s) | 538 |
| EcoICRI | GAGCTC | 1 cut(s) | 535 |
| EcoO109I | RGGNCCY | 1 cut(s) | 96 |
| EcoRII | CCWGG | 1 cut(s) | 498 |
| EcoT38I | GRGCYC | 1 cut(s) | 537 |
| FaeI | CATG | 3 cut(s) | 130, 581, 776 |
| FaqI | GGGAC | 3 cut(s) | 109, 524, 583 |
| FatI | CATG | 3 cut(s) | 126, 577, 772 |
| FauI | CCCGC | 1 cut(s) | 544 |
| FokI | GGATG | 3 cut(s) | 209, 722, 884 |
| FriOI | GRGCYC | 1 cut(s) | 537 |
| FspBI | CTAG | 1 cut(s) | 807 |
| GsaI | CCCAGC | 1 cut(s) | 806 |
| GsuI | CTGGAG | 1 cut(s) | 494 |
| HaeIII | GGCC | 1 cut(s) | 330 |
| HapII | CCGG | 3 cut(s) | 93, 318, 605 |
| Hin1II | CATG | 3 cut(s) | 130, 581, 776 |
| HincII | GTYRAC | 2 cut(s) | 586, 828 |
| HindII | GTYRAC | 2 cut(s) | 586, 828 |
| HinfI | GANTC | 8 cut(s) | 8, 150, 167, 227, 495, 512, 844, 875 |
| HpaII | CCGG | 3 cut(s) | 93, 318, 605 |
| HphI | GGTGA | 2 cut(s) | 679, 899 |
| Hpy166II | GTNNAC | 3 cut(s) | 586, 598, 828 |
| Hpy188I | TCNGA | 1 cut(s) | 546 |
| Hpy188III | TCNNGA | 3 cut(s) | 62, 473, 530 |
| Hpy8I | GTNNAC | 3 cut(s) | 586, 598, 828 |
| HpyAV | CCTTC | 5 cut(s) | 109, 244, 658, 721, 770 |
| HpyCH4III | ACNGT | 3 cut(s) | 235, 574, 823 |
| HpyCH4V | TGCA | 5 cut(s) | 126, 184, 238, 460, 865 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 23, 293, 460, 638, 728, 743, 788, 890 |
| HpyF3I | CTNAG | 8 cut(s) | 152, 288, 408, 422, 450, 485, 522, 615 |
| Hsp92II | CATG | 3 cut(s) | 130, 581, 776 |
| KroI | GCCGGC | 1 cut(s) | 604 |
| KroNI | GCCGGC | 1 cut(s) | 606 |
| Kzo9I | GATC | 5 cut(s) | 58, 162, 400, 504, 809 |
| LmnI | GCTCC | 3 cut(s) | 439, 478, 562 |
| LweI | GCATC | 3 cut(s) | 13, 187, 880 |
| MaeI | CTAG | 1 cut(s) | 807 |
| MaeIII | GTNAC | 2 cut(s) | 143, 762 |
| MalI | GATC | 5 cut(s) | 60, 164, 402, 506, 811 |
| MboI | GATC | 5 cut(s) | 58, 162, 400, 504, 809 |
| MboII | GAAGA | 7 cut(s) | 322, 356, 386, 631, 634, 673, 736 |
| MflI | RGATCY | 1 cut(s) | 400 |
| MhlI | GDGCHC | 2 cut(s) | 523, 537 |
| MlsI | TGGCCA | 1 cut(s) | 330 |
| MluCI | AATT | 1 cut(s) | 178 |
| MluNI | TGGCCA | 1 cut(s) | 330 |
| MlyI | GAGTC | 4 cut(s) | 144, 176, 504, 506 |
| MmeI | TCCRAC | 1 cut(s) | 330 |
| Mox20I | TGGCCA | 1 cut(s) | 330 |
| MroNI | GCCGGC | 1 cut(s) | 604 |
| MscI | TGGCCA | 1 cut(s) | 330 |
| MslI | CAYNNNNRTG | 2 cut(s) | 679, 870 |
| Msp20I | TGGCCA | 1 cut(s) | 330 |
| MspA1I | CMGCKG | 3 cut(s) | 454, 484, 788 |
| MspI | CCGG | 3 cut(s) | 93, 318, 605 |
| MspR9I | CCNGG | 2 cut(s) | 94, 500 |
| MvaI | CCWGG | 1 cut(s) | 500 |
| MvnI | CGCG | 1 cut(s) | 272 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 23, 293, 460, 638, 728, 743, 788, 890 |
| NaeI | GCCGGC | 1 cut(s) | 606 |
| NciI | CCSGG | 1 cut(s) | 94 |
| NdeII | GATC | 5 cut(s) | 58, 162, 400, 504, 809 |
| NgoMIV | GCCGGC | 1 cut(s) | 604 |
| NlaIII | CATG | 3 cut(s) | 130, 581, 776 |
| NlaIV | GGNNCC | 2 cut(s) | 97, 491 |
| NmeAIII | GCCGAG | 1 cut(s) | 226 |
| OliI | CACNNNNGTG | 1 cut(s) | 679 |
| PaqCI | CACCTGC | 1 cut(s) | 875 |
| PdiI | GCCGGC | 1 cut(s) | 606 |
| PfeI | GAWTC | 4 cut(s) | 8, 227, 844, 875 |
| PflFI | GACNNNGTC | 1 cut(s) | 823 |
| PfoI | TCCNGGA | 1 cut(s) | 498 |
| PleI | GAGTC | 4 cut(s) | 144, 175, 503, 506 |
| PpsI | GAGTC | 4 cut(s) | 144, 175, 503, 506 |
| PpuMI | RGGWCCY | 1 cut(s) | 96 |
| Psp124BI | GAGCTC | 1 cut(s) | 537 |
| Psp5II | RGGWCCY | 1 cut(s) | 96 |
| Psp6I | CCWGG | 1 cut(s) | 498 |
| PspFI | CCCAGC | 1 cut(s) | 802 |
| PspGI | CCWGG | 1 cut(s) | 498 |
| PspN4I | GGNNCC | 2 cut(s) | 97, 491 |
| PspPI | GGNCC | 1 cut(s) | 96 |
| PspPPI | RGGWCCY | 1 cut(s) | 96 |
| PstI | CTGCAG | 1 cut(s) | 462 |
| PstNI | CAGNNNCTG | 2 cut(s) | 457, 737 |
| PsuI | RGATCY | 1 cut(s) | 400 |
| PsyI | GACNNNGTC | 1 cut(s) | 823 |
| PvuII | CAGCTG | 2 cut(s) | 454, 484 |
| RseI | CAYNNNNRTG | 2 cut(s) | 679, 870 |
| SacI | GAGCTC | 1 cut(s) | 537 |
| Sau3AI | GATC | 5 cut(s) | 58, 162, 400, 504, 809 |
| Sau96I | GGNCC | 1 cut(s) | 96 |
| SchI | GAGTC | 4 cut(s) | 144, 176, 504, 506 |
| ScrFI | CCNGG | 2 cut(s) | 94, 500 |
| SduI | GDGCHC | 2 cut(s) | 523, 537 |
| SfaNI | GCATC | 3 cut(s) | 13, 187, 880 |
| SfcI | CTRYAG | 1 cut(s) | 458 |
| SinI | GGWCC | 1 cut(s) | 96 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 679, 870 |
| Sse9I | AATT | 1 cut(s) | 178 |
| SsiI | CCGC | 4 cut(s) | 270, 551, 707, 786 |
| SspMI | CTAG | 1 cut(s) | 807 |
| SstI | GAGCTC | 1 cut(s) | 537 |
| StyD4I | CCNGG | 2 cut(s) | 92, 498 |
| TaaI | ACNGT | 3 cut(s) | 235, 574, 823 |
| TaqI | TCGA | 3 cut(s) | 110, 165, 812 |
| TasI | AATT | 1 cut(s) | 178 |
| TfiI | GAWTC | 4 cut(s) | 8, 227, 844, 875 |
| TscAI | CASTG | 2 cut(s) | 423, 828 |
| TspDTI | ATGAA | 6 cut(s) | 143, 240, 378, 566, 674, 789 |
| TspRI | CASTG | 2 cut(s) | 423, 828 |
| Tth111I | GACNNNGTC | 1 cut(s) | 823 |
| VpaK11BI | GGWCC | 1 cut(s) | 96 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 112 |
| XspI | CTAG | 1 cut(s) | 807 |