Rmu_ssc0000213.1_g000051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000213.1
OG0000075
Physical Location & Seq
Forward (+)
204494 .. 208834
4341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000213.1_g000051.1.cds

Sequence Viewer

Length: 2940 bp
atgtcttggtctgctactatcgctatcagtctcctatctgtaaaacaacaaaggtcagaaagaagaccaggtgtgcggaccttcaacgctctgatgcctaagtcagtgtgtgagagcttggtttcattccctttggtgtgggacgtttgggttcccaatatcgccttacgggatatcgtagaagcatcagaagtgcaaggcgagttggtgccacgtggcttccgtaagatcattaccccccagtccgccaagtccatacttaagaagagtcttggctggggtgaggagattgttctcacaattgtcattgggtcgctatcgcgaacctgtgtatggcacgggagcgtcatggtcgaggtaggcgagagggctcttcttatggaggtggggaaggcgtttctcgtggtggtgtcggggcttcttatggagatggcgagtgttcctcgcggacgtggcgagggtgtttctcgaggaggtaccgtgggagcttcttgcggatgtggcgagggtgtttctcatggggtctcgagtagggttgagcatactacggggcctgaggttcccgaggcgttgaatgttgaggtattggagattctgcactcgccaggtaggcggctactccttggcgaggtgcccattgaccaaccgggttcgaatatgatagaggagcaaatcgccgatatgaggacgacatgggggcaattgtcgcccaatgcattgaggcaattgatgggagttttgctgttgtggaagcttactaggcagttatctcccaacattggtgaatttaactccgtggtcaagatccaatattcgacgaaggccggagataatgggtgtgtgaacttcagggcactcggccgcgcgataatcaaggactttccatcaaacatttatgctcgctggaggggcaggccttgcctggttggtggccgttggcagaatccggacatggtgcatcgggaggctgtcctgaccacgctagagcagaagtgtgtttcaagagttttgggcgcgttccctaaggggaagaggggtttttatctcctgtgtaggtttccgatatcggatatgcctaacgaggctgacagcaagacagacgctccgtatgctgaagtcgatactgatgtcatcatcgaggacctgttgcgagagtcgaagacggagaggcgatgtaatgttgagcttcccaagaagagcacgaggcagtccccccgagtctcgactagtgcggtggggtgtggtgtcgtggatgagccgacagggccaggggtcgaagtggagatctctgttgatgagctgtttgaggaagtcgaacggtgccaaagcgataccagtgccaggtctcgtctggtacaagatgctgtgttagagcagttggatgccgtttttggcgacgatatcggtggtctggtatcgcgagaagtcattactgtcgacagcggggaagccgaggtgactagccagactgttggtgatgcggttcttgctgctgaggctcctgaagctcaccgggtgggagagggcgatgttgggggtgctcaggttgccaagacagatgcccctgtccaggatagaggggtggatgagactcgagtatcggatacttgtgctcgtattgatggggctggatcgagggagagggctgcctcgcagcctgatcttggaagtctcccggtgggtgttgctgtcgatcctcgagggaggaagaaatctcgggttgaaggtgtagcgcattcgagatctacaagtagggactctcggggttctcgtgatgatgtggttgggggtctcgcgcacactcttgacgacatcgggatcacagatgatgccattcttcacatggttactgacttgcgcaactgtcatcgtgatcgtagctgtgtgaattctgaggatcctcgccttgggtatcgagaggctcaggagagattgatgtgggctgtgaatatgaattatcaagcgtccgctcagttgcttgcacatttcgatcgggagatcgcccgattgcagggagagctgaatgcggagagggagcgggcacgcgagcttcagggggctttggatcggggccatgtggagcgtgaggagatgaggcgggcggttgatgatgggatcacgaggaggatggaattggagcggtcgctcgcaatggaggggtctcgacgtcgggaggctgaggatgtcgttgccccactgaaggagtcaaacctggacctgaccaataagctgcagcgagccgaagttggcctgaaggctttggaagaggtgagggcccgggttcttgaaactgaagagggtctgcaagatttggagaggcaggtccaagaacgcgatgccgagttggagcttcgtggtgtcgcgttgcagagtttggctccttatcccgatcgcgttttggagttggaggggcagattggtagcttgcaaggggaaattgatcgcttgagggttgtcgagtgtcaagctggcgagaaggatgcggagctcgagaaattgaggaaggagctagccgagacgcattttgacaagcttcaaatggccaaacgagacggtgcggcgaaggcggtggatcattatcttttatcctccaactttcaggagaagataaataaggccttttcggatggggctctgcactctatccgtgatggtatcgccgctggctggattgataaggagaaaatggtttgttatatgcaggcgaagaaggcggcgagatcgcaaaccagtgccacgagtggtggtcgtggcgggggtatcgtgatctgcgaaccggctactgcaatagagcacgtctcgagctatgtcggcgatcgcgaggcggagggtgcaaatatgggcgaacaagaggaagtgcgtgcggatgccgaggtcgagaatgttggggagcgagaccgagtgggggagcaggcgcccagtgccgagggagagacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

979

Amino Acids

107.11

Weight (kDa)

5.19

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000075)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0348161 RchiOBHm_Chr1g0367481 RchiOBHm_Chr1g0368431 RchiOBHm_Chr2g0116021 RchiOBHm_Chr2g0133961 RchiOBHm_Chr4g0390151 RchiOBHm_Chr4g0402771 RchiOBHm_Chr4g0419581 RchiOBHm_Chr5g0054351 RchiOBHm_Chr6g0278891 RchiOBHm_Chr7g0201941 RchiOBHm_Chr7g0242761
rosa_laevigata RLG00000002487 RLG00000002488 RLG00000003412 RLG00000003415 RLG00000013607 RLG00000018981 RLG00000018982 RLG00000034520 RLG00000034521
rosa_multiflora Rmu_co8024510.1_g000001 Rmu_co8121892.1_g000001 Rmu_co8133046.1_g000001 Rmu_co8158032.1_g000001 Rmu_co8181114.1_g000001 Rmu_co8202532.1_g000001 Rmu_co8331471.1_g000001 Rmu_co8340209.1_g000001 Rmu_co8359899.1_g000001 Rmu_co8433657.1_g000002 Rmu_co8436419.1_g000002 Rmu_co8458211.1_g000002 Rmu_co8458731.1_g000002 Rmu_co8466361.1_g000001 Rmu_co8474565.1_g000001 Rmu_co8474565.1_g000002 Rmu_co8482201.1_g000001 Rmu_co8491967.1_g000003 Rmu_co8498095.1_g000001 Rmu_co8513217.1_g000002 Rmu_co8518257.1_g000001 Rmu_co8520425.1_g000003 Rmu_co8521283.1_g000003 Rmu_sc0000029.1_g000029 Rmu_sc0000082.1_g000019 Rmu_sc0000147.1_g000107 Rmu_sc0000212.1_g000005 Rmu_sc0000247.1_g000030 Rmu_sc0000367.1_g000175 Rmu_sc0000433.1_g000035 Rmu_sc0000538.1_g000038 Rmu_sc0000550.1_g000010 Rmu_sc0000635.1_g000007 Rmu_sc0000650.1_g000012 Rmu_sc0000652.1_g000009 Rmu_sc0000652.1_g000010 Rmu_sc0000742.1_g000010 Rmu_sc0000750.1_g000007 Rmu_sc0000750.1_g000008 Rmu_sc0000772.1_g000018 Rmu_sc0000830.1_g000026 Rmu_sc0000859.1_g000006 Rmu_sc0001190.1_g000039 Rmu_sc0001190.1_g000050 Rmu_sc0001190.1_g000051 Rmu_sc0001205.1_g000008 Rmu_sc0001294.1_g000025 Rmu_sc0001366.1_g000010 Rmu_sc0001373.1_g000036 Rmu_sc0001423.1_g000046 Rmu_sc0001788.1_g000014 Rmu_sc0001801.1_g000016 Rmu_sc0001849.1_g000032 Rmu_sc0001967.1_g000002 Rmu_sc0002082.1_g000066 Rmu_sc0002250.1_g000013 Rmu_sc0002322.1_g000039 Rmu_sc0002371.1_g000002 Rmu_sc0002522.1_g000036 Rmu_sc0002532.1_g000048 Rmu_sc0002669.1_g000065 Rmu_sc0002669.1_g000067 Rmu_sc0002669.1_g000069 Rmu_sc0002834.1_g000007 Rmu_sc0003226.1_g000070 Rmu_sc0003260.1_g000018 Rmu_sc0003313.1_g000007 Rmu_sc0003441.1_g000018 Rmu_sc0003490.1_g000008 Rmu_sc0003705.1_g000011 Rmu_sc0003737.1_g000013 Rmu_sc0003748.1_g000020 Rmu_sc0003910.1_g000015 Rmu_sc0003919.1_g000029 Rmu_sc0003919.1_g000031 Rmu_sc0004037.1_g000012 Rmu_sc0004099.1_g000003 Rmu_sc0004122.1_g000013 Rmu_sc0004402.1_g000013 Rmu_sc0004646.1_g000035 Rmu_sc0004688.1_g000024 Rmu_sc0004823.1_g000046 Rmu_sc0004869.1_g000003 Rmu_sc0004869.1_g000004 Rmu_sc0005132.1_g000035 Rmu_sc0005190.1_g000001 Rmu_sc0005229.1_g000005 Rmu_sc0005229.1_g000023 Rmu_sc0005363.1_g000034 Rmu_sc0005537.1_g000006 Rmu_sc0005657.1_g000024 Rmu_sc0005856.1_g000011 Rmu_sc0005856.1_g000012 Rmu_sc0005953.1_g000007 Rmu_sc0005971.1_g000015 Rmu_sc0006287.1_g000004 Rmu_sc0006315.1_g000014 Rmu_sc0006518.1_g000003 Rmu_sc0006695.1_g000066 Rmu_sc0006803.1_g000056 Rmu_sc0006822.1_g000002 Rmu_sc0006926.1_g000011 Rmu_sc0007560.1_g000008 Rmu_sc0007582.1_g000005 Rmu_sc0007618.1_g000025 Rmu_sc0007647.1_g000004 Rmu_sc0007656.1_g000013 Rmu_sc0007877.1_g000011 Rmu_sc0008528.1_g000005 Rmu_sc0008528.1_g000006 Rmu_sc0008749.1_g000004 Rmu_sc0008989.1_g000003 Rmu_sc0009120.1_g000010 Rmu_sc0009663.1_g000009 Rmu_sc0010035.1_g000001 Rmu_sc0010160.1_g000010 Rmu_sc0010160.1_g000011 Rmu_sc0010953.1_g000004 Rmu_sc0011008.1_g000006 Rmu_sc0011452.1_g000009 Rmu_sc0012746.1_g000014 Rmu_sc0013612.1_g000017 Rmu_sc0013951.1_g000011 Rmu_sc0014162.1_g000009 Rmu_sc0014162.1_g000010 Rmu_sc0016149.1_g000003 Rmu_sc0016418.1_g000008 Rmu_sc0016418.1_g000009 Rmu_sc0017353.1_g000001 Rmu_sc0017353.1_g000002 Rmu_sc0018537.1_g000012 Rmu_sc0019739.1_g000003 Rmu_sc0019739.1_g000004 Rmu_sc0020186.1_g000016 Rmu_sc0021611.1_g000001 Rmu_sc0022755.1_g000003 Rmu_sc0024226.1_g000006 Rmu_sc0025769.1_g000004 Rmu_sc0025769.1_g000005 Rmu_sc0030235.1_g000004 Rmu_sc0035508.1_g000007 Rmu_sc0036413.1_g000001 Rmu_sc0037646.1_g000001 Rmu_sc0037646.1_g000002 Rmu_sc0037647.1_g000001 Rmu_sc0037647.1_g000002 Rmu_sc0037678.1_g000001 Rmu_ssc0000072.1_g000010 Rmu_ssc0000116.1_g000041 Rmu_ssc0000127.1_g000018 Rmu_ssc0000175.1_g000018 Rmu_ssc0000175.1_g000019 Rmu_ssc0000175.1_g000020 Rmu_ssc0000197.1_g000037 Rmu_ssc0000213.1_g000051 Rmu_ssc0000359.1_g000008 Rmu_ssc0000392.1_g000019
rosa_roxburghii Rroxscaffold_154G00447930 Rroxscaffold_1G00000570 Rroxscaffold_1G00009890 Rroxscaffold_1G00012210 Rroxscaffold_1G00012960 Rroxscaffold_1G00014650 Rroxscaffold_1G00014660 Rroxscaffold_1G00014670 Rroxscaffold_1G00022880 Rroxscaffold_1G00024640 Rroxscaffold_1G00024650 Rroxscaffold_1G00025670 Rroxscaffold_1G00025680 Rroxscaffold_1G00025690 Rroxscaffold_1G00030660 Rroxscaffold_1G00031340 Rroxscaffold_1G00031350 Rroxscaffold_2G00103100 Rroxscaffold_2G00103120 Rroxscaffold_2G00107390 Rroxscaffold_2G00108940 Rroxscaffold_2G00110610 Rroxscaffold_2G00110620 Rroxscaffold_2G00110710 Rroxscaffold_2G00110720 Rroxscaffold_2G00110730 Rroxscaffold_2G00111170 Rroxscaffold_2G00111510 Rroxscaffold_2G00114750 Rroxscaffold_2G00114760 Rroxscaffold_2G00114770 Rroxscaffold_2G00116270 Rroxscaffold_2G00121090 Rroxscaffold_2G00129350 Rroxscaffold_2G00130410 Rroxscaffold_2G00155930 Rroxscaffold_3G00218120 Rroxscaffold_3G00218330 Rroxscaffold_3G00218340 Rroxscaffold_3G00227530 Rroxscaffold_3G00233140 Rroxscaffold_3G00236800 Rroxscaffold_3G00242370 Rroxscaffold_3G00242380 Rroxscaffold_3G00242410 Rroxscaffold_3G00248720 Rroxscaffold_3G00248730 Rroxscaffold_3G00248770 Rroxscaffold_3G00258550 Rroxscaffold_3G00258560 Rroxscaffold_4G00287000 Rroxscaffold_4G00289070 Rroxscaffold_4G00289080 Rroxscaffold_4G00289100 Rroxscaffold_4G00295600 Rroxscaffold_4G00298090 Rroxscaffold_4G00308330 Rroxscaffold_4G00310570 Rroxscaffold_4G00310580 Rroxscaffold_4G00310620 Rroxscaffold_4G00315750 Rroxscaffold_4G00319620 Rroxscaffold_4G00319630 Rroxscaffold_4G00328870 Rroxscaffold_4G00328880 Rroxscaffold_4G00332120 Rroxscaffold_4G00332310 Rroxscaffold_5G00332660 Rroxscaffold_5G00332710 Rroxscaffold_5G00332970 Rroxscaffold_5G00344920 Rroxscaffold_5G00345540 Rroxscaffold_5G00346760 Rroxscaffold_5G00346770 Rroxscaffold_5G00347420 Rroxscaffold_5G00350360 Rroxscaffold_5G00350370 Rroxscaffold_5G00354490 Rroxscaffold_5G00370760 Rroxscaffold_5G00370770 Rroxscaffold_5G00374010 Rroxscaffold_5G00374020 Rroxscaffold_5G00374490 Rroxscaffold_5G00374510 Rroxscaffold_5G00387640 Rroxscaffold_5G00387650 Rroxscaffold_6G00387870 Rroxscaffold_6G00388560 Rroxscaffold_6G00388570 Rroxscaffold_6G00388670 Rroxscaffold_6G00388680 Rroxscaffold_6G00391960 Rroxscaffold_6G00393010 Rroxscaffold_6G00395010 Rroxscaffold_6G00395020 Rroxscaffold_6G00397990 Rroxscaffold_6G00401460 Rroxscaffold_6G00407850 Rroxscaffold_6G00423090 Rroxscaffold_6G00423100 Rroxscaffold_6G00423110 Rroxscaffold_7G00165960 Rroxscaffold_7G00165970 Rroxscaffold_7G00176270 Rroxscaffold_7G00176280 Rroxscaffold_7G00176600 Rroxscaffold_7G00176610 Rroxscaffold_7G00176620 Rroxscaffold_7G00176660 Rroxscaffold_7G00195710
rosa_rugosa Rorug03G0209000 Rorug05G0468000 Rorug05G0468000
rosa_samantha Rh3AG250900 Rh3AG257700 Rh3BG294700 Rh3CG284700 Rh3CG284800 Rh3DG280200 Rh3DG280300 Rh3DG280500 Rh3DG287600 Rh3DG287700 Rh4BG408500 Rh4DG402700 Rh6CG194400 Rh6CG194600 Rh6DG186400 Rh6DG186500 Rh7AG218100 Rh7AG278800 Rh7BG224200 Rh7CG231300 Rh7CG231400 Rh7DG225400
rosa_wichuraiana Rw3G022640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2170
AbsI CCTCGAGG 1 cut(s) 1698
Acc16I TGCGCA 1 cut(s) 1859
Acc36I ACCTGC 1 cut(s) 2311
Acc65I GGTACC 1 cut(s) 476
AccB1I GGYRCC 5 cut(s) 208, 476, 631, 1320, 2914
AccBSI CCGCTC 3 cut(s) 1970, 2038, 2140
AccI GTMKAC 1 cut(s) 1437
AccIII TCCGGA 1 cut(s) 946
AclWI GGATC 9 cut(s) 799, 1639, 1688, 1826, 1892, 1905, 2073, 2123, 2580
AcoI YGGCCR 3 cut(s) 859, 931, 2541
AcsI RAATTY 2 cut(s) 785, 1888
AcuI CTGAAG 7 cut(s) 832, 1134, 1524, 2036, 2219, 2273, 2313
AcvI CACGTG 1 cut(s) 215
AcyI GRCGYC 2 cut(s) 2167, 2915
AdeI CACNNNGTG 1 cut(s) 1516
AfaI GTAC 2 cut(s) 478, 1356
AflII CTTAAG 1 cut(s) 260
AgsI TTSAA 6 cut(s) 85, 574, 1002, 1724, 2288, 2537
AhlI ACTAGT 1 cut(s) 1226
AjiI CACGTC 2 cut(s) 452, 2797
AjnI CCWGG 7 cut(s) 67, 604, 921, 1267, 1340, 1569, 2211
Alw21I GWGCWC 5 cut(s) 1202, 1543, 1615, 2490, 2796
AlwI GGATC 9 cut(s) 799, 1639, 1688, 1826, 1892, 1905, 2073, 2123, 2580
Aor13HI TCCGGA 1 cut(s) 946
ApaI GGGCCC 1 cut(s) 2278
ApeKI GCWGC 5 cut(s) 1490, 1646, 1654, 2230, 2233
ApoI RAATTY 2 cut(s) 785, 1888
AsiSI GCGATCGC 1 cut(s) 2818
Asp718I GGTACC 1 cut(s) 476
AspLEI GCGC 6 cut(s) 866, 1016, 1735, 1798, 1860, 2917
AspS9I GGNCC 9 cut(s) 78, 551, 1141, 1265, 2071, 2215, 2274, 2275, 2323
AsuC2I CCSGG 5 cut(s) 648, 1514, 1676, 2278, 2279
AsuHPI GGTGA 6 cut(s) 293, 794, 1468, 1487, 1502, 2281
AsuII TTCGAA 1 cut(s) 653
AsuNHI GCTAGC 1 cut(s) 2509
AvaII GGWCC 4 cut(s) 78, 1141, 2215, 2323
AxyI CCTNAGG 2 cut(s) 555, 1023
BaeGI GKGCMC 4 cut(s) 636, 856, 2044, 2278
BaeI ACNNNNGTAYC 4 cut(s) 1113, 1146, 1581, 1614
BalI TGGCCA 1 cut(s) 2543
BamHI GGATCC 1 cut(s) 1897
BanI GGYRCC 5 cut(s) 208, 476, 631, 1320, 2914
BanII GRGCYC 4 cut(s) 373, 2278, 2490, 2635
BauI CACGAG 5 cut(s) 401, 1201, 1770, 2119, 2737
BbrPI CACGTG 1 cut(s) 215
BbsI GAAGAC 2 cut(s) 70, 1166
Bbv12I GWGCWC 5 cut(s) 1202, 1543, 1615, 2490, 2796
BbvCI CCTCAGC 2 cut(s) 1494, 2178
BbvI GCAGC 5 cut(s) 1477, 1633, 1666, 2217, 2245
BccI CCATC 8 cut(s) 424, 724, 892, 1616, 2105, 2122, 2621, 2645
BceAI ACGGC 2 cut(s) 918, 1370
BcgI CGANNNNNNTGC 4 cut(s) 1319, 1353, 2462, 2496
BciT130I CCWGG 7 cut(s) 69, 606, 923, 1269, 1342, 1571, 2213
BciVI GTATCC 1 cut(s) 1597
BcnI CCSGG 5 cut(s) 648, 1514, 1676, 2278, 2279
BcuI ACTAGT 1 cut(s) 1226
BfaI CTAG 5 cut(s) 759, 983, 1227, 1461, 2510
BfmI CTRYAG 1 cut(s) 2231
BfoI RGCGCY 1 cut(s) 2918
BfrI CTTAAG 1 cut(s) 260
BfuAI ACCTGC 1 cut(s) 2311
BfuI GTATCC 1 cut(s) 1597
BglI GCCNNNNNGGC 2 cut(s) 610, 1264
BglII AGATCT 2 cut(s) 1284, 1742
Bme18I GGWCC 4 cut(s) 78, 1141, 2215, 2323
BmgBI CACGTC 2 cut(s) 452, 2797
BmgT120I GGNCC 9 cut(s) 78, 551, 1141, 1265, 2071, 2215, 2274, 2275, 2323
BmrI ACTGGG 2 cut(s) 235, 2913
BmtI GCTAGC 1 cut(s) 2513
BmuI ACTGGG 2 cut(s) 235, 2913
BpiI GAAGAC 2 cut(s) 70, 1166
BplI GAGNNNNNCTC 6 cut(s) 427, 459, 2362, 2394, 2783, 2815
BpmI CTGGAG 1 cut(s) 925
Bpu10I CCTNAGC 4 cut(s) 1494, 1542, 1923, 2178
Bpu14I TTCGAA 1 cut(s) 653
BpuEI CTTGAG 1 cut(s) 2467
BpuMI CCSGG 5 cut(s) 648, 1514, 1676, 2278, 2279
BsaAI YACGTR 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 2577
BsaHI GRCGYC 2 cut(s) 2167, 2915
BsaI GGTCTC 5 cut(s) 529, 1350, 1796, 2166, 2889
BsaWI WCCGGW 1 cut(s) 946
BsaXI ACNNNNNCTCC 4 cut(s) 465, 495, 1087, 1117
Bse118I RCCGGY 1 cut(s) 2776
Bse1I ACTGG 4 cut(s) 241, 1335, 2730, 2919
Bse21I CCTNAGG 2 cut(s) 555, 1023
Bse3DI GCAATG 1 cut(s) 2157
Bse8I GATNNNNATC 1 cut(s) 2577
BseAI TCCGGA 1 cut(s) 946
BseBI CCWGG 7 cut(s) 69, 606, 923, 1269, 1342, 1571, 2213
BseGI GGATG 9 cut(s) 503, 1258, 1387, 1591, 2133, 2188, 2485, 2632, 2872
BseJI GATNNNNATC 1 cut(s) 2577
BseMI GCAATG 1 cut(s) 2157
BseMII CTCAG 7 cut(s) 546, 1485, 1556, 1884, 1937, 1985, 2169
BseNI ACTGG 4 cut(s) 241, 1335, 2730, 2919
BseRI GAGGAG 5 cut(s) 299, 486, 680, 2102, 2137
BseSI GKGCMC 4 cut(s) 636, 856, 2044, 2278
BseX3I CGGCCG 1 cut(s) 859
BseXI GCAGC 5 cut(s) 1477, 1633, 1666, 2217, 2245
BseYI CCCAGC 1 cut(s) 276
BsgI GTGCAG 2 cut(s) 581, 2621
Bsh1285I CGRYCG 5 cut(s) 862, 1993, 2144, 2392, 2818
BshNI GGYRCC 5 cut(s) 208, 476, 631, 1320, 2914
BsiEI CGRYCG 5 cut(s) 862, 1993, 2144, 2392, 2818
BsiHKAI GWGCWC 5 cut(s) 1202, 1543, 1615, 2490, 2796
BsiSI CCGG 7 cut(s) 647, 825, 947, 1513, 1676, 2278, 2777
BslFI GGGAC 3 cut(s) 155, 1195, 1769
BsmBI CGTCTC 3 cut(s) 2510, 2544, 2803
BsmFI GGGAC 3 cut(s) 155, 1195, 1769
BsmI GAATGC 2 cut(s) 1735, 2029
Bso31I GGTCTC 5 cut(s) 529, 1350, 1796, 2166, 2889
Bsp119I TTCGAA 1 cut(s) 653
Bsp120I GGGCCC 1 cut(s) 2274
Bsp13I TCCGGA 1 cut(s) 946
Bsp68I TCGCGA 3 cut(s) 322, 1420, 2820
BspCNI CTCAG 7 cut(s) 547, 1486, 1555, 1885, 1936, 1984, 2170
BspEI TCCGGA 1 cut(s) 946
BspMAI CTGCAG 1 cut(s) 2235
BspMI ACCTGC 1 cut(s) 2311
BspOI GCTAGC 1 cut(s) 2513
BspPI GGATC 9 cut(s) 799, 1639, 1688, 1826, 1892, 1905, 2073, 2123, 2580
BspQI GCTCTTC 2 cut(s) 378, 1190
BspT104I TTCGAA 1 cut(s) 653
BspT107I GGYRCC 5 cut(s) 208, 476, 631, 1320, 2914
BspTI CTTAAG 1 cut(s) 260
BspTNI GGTCTC 5 cut(s) 529, 1350, 1796, 2166, 2889
BsrBI CCGCTC 3 cut(s) 1970, 2038, 2140
BsrDI GCAATG 1 cut(s) 2157
BsrFI RCCGGY 1 cut(s) 2776
BsrI ACTGG 4 cut(s) 241, 1335, 2730, 2919
BssAI RCCGGY 1 cut(s) 2776
BssNI GRCGYC 2 cut(s) 2167, 2915
BssSI CACGAG 5 cut(s) 401, 1201, 1770, 2119, 2737
BssT1I CCWWGG 2 cut(s) 622, 1906
Bst2BI CACGAG 5 cut(s) 401, 1201, 1770, 2119, 2737
Bst2UI CCWGG 7 cut(s) 69, 606, 923, 1269, 1342, 1571, 2213
Bst4CI ACNGT 6 cut(s) 481, 1320, 1435, 1471, 1865, 2555
Bst6I CTCTTC 6 cut(s) 260, 378, 1025, 1190, 2259, 2289
BstACI GRCGYC 2 cut(s) 2167, 2915
BstAFI CTTAAG 1 cut(s) 260
BstAPI GCANNNNNTGC 1 cut(s) 918
BstBAI YACGTR 1 cut(s) 215
BstBI TTCGAA 1 cut(s) 653
BstDEI CTNAG 9 cut(s) 99, 555, 1023, 1494, 1542, 1893, 1923, 1971, 2178
BstDSI CCRYGG 2 cut(s) 480, 795
BstENI CCTNNNNNAGG 1 cut(s) 626
BstF5I GGATG 9 cut(s) 503, 1258, 1387, 1591, 2133, 2188, 2485, 2632, 2872
BstH2I RGCGCY 1 cut(s) 2918
BstHHI GCGC 6 cut(s) 866, 1016, 1735, 1798, 1860, 2917
BstMCI CGRYCG 5 cut(s) 862, 1993, 2144, 2392, 2818
BstNI CCWGG 7 cut(s) 69, 606, 923, 1269, 1342, 1571, 2213
BstSFI CTRYAG 1 cut(s) 2231
BstSLI GKGCMC 4 cut(s) 636, 856, 2044, 2278
BstV1I GCAGC 5 cut(s) 1477, 1633, 1666, 2217, 2245
BstV2I GAAGAC 2 cut(s) 70, 1166
BstX2I RGATCY 4 cut(s) 804, 1284, 1742, 1897
BstXI CCANNNNNNTGG 1 cut(s) 1472
BstYI RGATCY 4 cut(s) 804, 1284, 1742, 1897
BstZI CGGCCG 1 cut(s) 859
Bsu36I CCTNAGG 2 cut(s) 555, 1023
BsuI GTATCC 1 cut(s) 1597
BtgI CCRYGG 2 cut(s) 480, 795
BtgZI GCGATG 3 cut(s) 1186, 1542, 2349
BtrI CACGTC 2 cut(s) 452, 2797
BtsCI GGATG 9 cut(s) 503, 1258, 1387, 1591, 2133, 2188, 2485, 2632, 2872
BtsIMutI CAGTG 5 cut(s) 111, 1342, 2195, 2737, 2926
BtuMI TCGCGA 3 cut(s) 322, 1420, 2820
BveI ACCTGC 1 cut(s) 2311
CfoI GCGC 6 cut(s) 866, 1016, 1735, 1798, 1860, 2917
Cfr10I RCCGGY 1 cut(s) 2776
Cfr13I GGNCC 9 cut(s) 78, 551, 1141, 1265, 2071, 2215, 2274, 2275, 2323
Cfr9I CCCGGG 1 cut(s) 2277
CseI GACGC 4 cut(s) 334, 1109, 1953, 2527
CsiI ACCWGGT 1 cut(s) 67
Csp6I GTAC 2 cut(s) 477, 1355
CviAII CATG 6 cut(s) 349, 518, 693, 952, 1843, 2075
CviQI GTAC 2 cut(s) 477, 1355
DdeI CTNAG 9 cut(s) 99, 555, 1023, 1494, 1542, 1893, 1923, 1971, 2178
DinI GGCGCC 1 cut(s) 2916
DraIII CACNNNGTG 1 cut(s) 1516
EaeI YGGCCR 3 cut(s) 859, 931, 2541
EagI CGGCCG 1 cut(s) 859
Eam1104I CTCTTC 6 cut(s) 260, 378, 1025, 1190, 2259, 2289
EarI CTCTTC 6 cut(s) 260, 378, 1025, 1190, 2259, 2289
EciI GGCGGA 2 cut(s) 235, 2840
Ecl136II GAGCTC 1 cut(s) 2488
EclXI CGGCCG 1 cut(s) 859
Eco130I CCWWGG 2 cut(s) 622, 1906
Eco147I AGGCCT 2 cut(s) 916, 2618
Eco24I GRGCYC 4 cut(s) 373, 2278, 2490, 2635
Eco31I GGTCTC 5 cut(s) 529, 1350, 1796, 2166, 2889
Eco32I GATATC 3 cut(s) 175, 1065, 1402
Eco47I GGWCC 4 cut(s) 78, 1141, 2215, 2323
Eco52I CGGCCG 1 cut(s) 859
Eco53kI GAGCTC 1 cut(s) 2488
Eco57I CTGAAG 7 cut(s) 832, 1134, 1524, 2036, 2219, 2273, 2313
Eco72I CACGTG 1 cut(s) 215
Eco81I CCTNAGG 2 cut(s) 555, 1023
EcoICRI GAGCTC 1 cut(s) 2488
EcoNI CCTNNNNNAGG 1 cut(s) 626
EcoO109I RGGNCCY 3 cut(s) 551, 1141, 2274
EcoRI GAATTC 1 cut(s) 1888
EcoRII CCWGG 7 cut(s) 67, 604, 921, 1267, 1340, 1569, 2211
EcoRV GATATC 3 cut(s) 175, 1065, 1402
EcoT14I CCWWGG 2 cut(s) 622, 1906
EcoT22I ATGCAT 1 cut(s) 718
EcoT38I GRGCYC 4 cut(s) 373, 2278, 2490, 2635
EgeI GGCGCC 1 cut(s) 2916
EheI GGCGCC 1 cut(s) 2916
ErhI CCWWGG 2 cut(s) 622, 1906
Esp3I CGTCTC 3 cut(s) 2510, 2544, 2803
FaeI CATG 6 cut(s) 352, 521, 696, 955, 1846, 2078
FaqI GGGAC 3 cut(s) 155, 1195, 1769
FatI CATG 6 cut(s) 348, 517, 692, 951, 1842, 2074
FauI CCCGC 4 cut(s) 1436, 2031, 2091, 2747
FblI GTMKAC 1 cut(s) 1437
FokI GGATG 9 cut(s) 510, 1265, 1394, 1598, 2140, 2195, 2492, 2639, 2879
FriOI GRGCYC 4 cut(s) 373, 2278, 2490, 2635
FspBI CTAG 5 cut(s) 759, 983, 1227, 1461, 2510
FspI TGCGCA 1 cut(s) 1859
GlaI GCGC 6 cut(s) 865, 1015, 1734, 1797, 1859, 2916
GsaI CCCAGC 1 cut(s) 280
GsuI CTGGAG 1 cut(s) 925
HaeII RGCGCY 1 cut(s) 2918
HapII CCGG 7 cut(s) 647, 825, 947, 1513, 1676, 2278, 2777
HgaI GACGC 4 cut(s) 334, 1109, 1953, 2527
HhaI GCGC 6 cut(s) 866, 1016, 1735, 1798, 1860, 2917
Hin1I GRCGYC 2 cut(s) 2167, 2915
Hin1II CATG 6 cut(s) 352, 521, 696, 955, 1846, 2078
Hin6I GCGC 6 cut(s) 864, 1014, 1733, 1796, 1858, 2915
HinP1I GCGC 6 cut(s) 864, 1014, 1733, 1796, 1858, 2915
HincII GTYRAC 1 cut(s) 1438
HindII GTYRAC 1 cut(s) 1438
HindIII AAGCTT 2 cut(s) 752, 2531
HinfI GANTC 8 cut(s) 268, 592, 943, 1154, 1218, 1591, 1757, 2204
HpaII CCGG 7 cut(s) 647, 825, 947, 1513, 1676, 2278, 2777
HphI GGTGA 6 cut(s) 293, 794, 1468, 1487, 1502, 2281
Hpy166II GTNNAC 2 cut(s) 844, 1438
Hpy188I TCNGA 8 cut(s) 58, 93, 190, 1062, 1069, 1603, 1894, 2626
Hpy8I GTNNAC 2 cut(s) 844, 1438
Hpy99I CGWCG 4 cut(s) 820, 1400, 2169, 2172
HpyCH4III ACNGT 6 cut(s) 481, 1320, 1435, 1471, 1865, 2555
HpyCH4IV ACGT 5 cut(s) 144, 214, 451, 2167, 2796
HpyF3I CTNAG 9 cut(s) 99, 555, 1023, 1494, 1542, 1893, 1923, 1971, 2178
HpySE526I ACGT 5 cut(s) 144, 214, 451, 2167, 2796
Hsp92I GRCGYC 2 cut(s) 2167, 2915
Hsp92II CATG 6 cut(s) 352, 521, 696, 955, 1846, 2078
HspAI GCGC 6 cut(s) 864, 1014, 1733, 1796, 1858, 2915
KasI GGCGCC 1 cut(s) 2914
Kpn2I TCCGGA 1 cut(s) 946
KpnI GGTACC 1 cut(s) 480
LguI GCTCTTC 2 cut(s) 378, 1190
Lsp1109I GCAGC 5 cut(s) 1477, 1633, 1666, 2217, 2245
MabI ACCWGGT 1 cut(s) 67
MaeI CTAG 5 cut(s) 759, 983, 1227, 1461, 2510
MaeII ACGT 5 cut(s) 144, 214, 451, 2167, 2796
MaeIII GTNAC 2 cut(s) 1456, 1846
MbiI CCGCTC 3 cut(s) 1970, 2038, 2140
MfeI CAATTG 3 cut(s) 300, 701, 725
MflI RGATCY 4 cut(s) 804, 1284, 1742, 1897
MlsI TGGCCA 1 cut(s) 2543
MluCI AATT 9 cut(s) 300, 701, 725, 785, 1888, 1954, 2132, 2436, 2495
MluNI TGGCCA 1 cut(s) 2543
Mly113I GGCGCC 1 cut(s) 2915
MlyI GAGTC 6 cut(s) 277, 1163, 1227, 1585, 1751, 2213
MmeI TCCRAC 4 cut(s) 1359, 2325, 2385, 2616
Mox20I TGGCCA 1 cut(s) 2543
Mph1103I ATGCAT 1 cut(s) 718
MroI TCCGGA 1 cut(s) 946
MscI TGGCCA 1 cut(s) 2543
MseI TTAA 2 cut(s) 261, 789
Msp20I TGGCCA 1 cut(s) 2543
MspA1I CMGCKG 2 cut(s) 1443, 2663
MspCI CTTAAG 1 cut(s) 260
MspI CCGG 7 cut(s) 647, 825, 947, 1513, 1676, 2278, 2777
MunI CAATTG 3 cut(s) 300, 701, 725
Mva1269I GAATGC 2 cut(s) 1735, 2029
MvaI CCWGG 7 cut(s) 69, 606, 923, 1269, 1342, 1571, 2213
NarI GGCGCC 1 cut(s) 2915
NciI CCSGG 5 cut(s) 648, 1514, 1676, 2278, 2279
NheI GCTAGC 1 cut(s) 2509
NlaIII CATG 6 cut(s) 352, 521, 696, 955, 1846, 2078
NmeAIII GCCGAG 5 cut(s) 837, 1477, 2365, 2539, 2896
NmuCI GTSAC 1 cut(s) 1456
NruI TCGCGA 3 cut(s) 322, 1420, 2820
NsbI TGCGCA 1 cut(s) 1859
NsiI ATGCAT 1 cut(s) 718
NspV TTCGAA 1 cut(s) 653
PaeR7I CTCGAG 6 cut(s) 468, 526, 1593, 1698, 2489, 2800
PceI AGGCCT 2 cut(s) 916, 2618
PciSI GCTCTTC 2 cut(s) 378, 1190
PcsI WCGNNNNNNNCGW 5 cut(s) 220, 360, 1768, 2769, 2817
PctI GAATGC 2 cut(s) 1735, 2029
PfeI GAWTC 2 cut(s) 592, 943
PfoI TCCNGGA 1 cut(s) 1569
Ple19I CGATCG 3 cut(s) 1993, 2392, 2818
PleI GAGTC 6 cut(s) 276, 1162, 1226, 1585, 1751, 2212
PluTI GGCGCC 1 cut(s) 2918
PmaCI CACGTG 1 cut(s) 215
PmlI CACGTG 1 cut(s) 215
PpsI GAGTC 6 cut(s) 276, 1162, 1226, 1585, 1751, 2212
Ppu21I YACGTR 1 cut(s) 215
PpuMI RGGWCCY 1 cut(s) 1141
Psp124BI GAGCTC 1 cut(s) 2490
Psp5II RGGWCCY 1 cut(s) 1141
Psp6I CCWGG 7 cut(s) 67, 604, 921, 1267, 1340, 1569, 2211
PspCI CACGTG 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 276
PspGI CCWGG 7 cut(s) 67, 604, 921, 1267, 1340, 1569, 2211
PspOMI GGGCCC 1 cut(s) 2274
PspPI GGNCC 9 cut(s) 78, 551, 1141, 1265, 2071, 2215, 2274, 2275, 2323
PspPPI RGGWCCY 1 cut(s) 1141
PspXI VCTCGAGB 2 cut(s) 1593, 1698
PstI CTGCAG 1 cut(s) 2235
PsuI RGATCY 4 cut(s) 804, 1284, 1742, 1897
PvuI CGATCG 3 cut(s) 1993, 2392, 2818
RgaI GCGATCGC 1 cut(s) 2818
RruI TCGCGA 3 cut(s) 322, 1420, 2820
RsaI GTAC 2 cut(s) 478, 1356
RsaNI GTAC 2 cut(s) 477, 1355
SacI GAGCTC 1 cut(s) 2490
SalI GTCGAC 1 cut(s) 1436
SapI GCTCTTC 2 cut(s) 378, 1190
SaqAI TTAA 2 cut(s) 261, 789
Sau96I GGNCC 9 cut(s) 78, 551, 1141, 1265, 2071, 2215, 2274, 2275, 2323
SchI GAGTC 6 cut(s) 277, 1163, 1227, 1585, 1751, 2213
SexAI ACCWGGT 1 cut(s) 67
SfaAI GCGATCGC 1 cut(s) 2818
SfcI CTRYAG 1 cut(s) 2231
SfoI GGCGCC 1 cut(s) 2916
Sfr274I CTCGAG 6 cut(s) 468, 526, 1593, 1698, 2489, 2800
SfuI TTCGAA 1 cut(s) 653
SgfI GCGATCGC 1 cut(s) 2818
SinI GGWCC 4 cut(s) 78, 1141, 2215, 2323
SlaI CTCGAG 6 cut(s) 468, 526, 1593, 1698, 2489, 2800
SmaI CCCGGG 1 cut(s) 2279
SmlI CTYRAG 8 cut(s) 260, 468, 526, 1593, 1698, 2446, 2489, 2800
SmoI CTYRAG 8 cut(s) 260, 468, 526, 1593, 1698, 2446, 2489, 2800
SpeI ACTAGT 1 cut(s) 1226
Sse9I AATT 9 cut(s) 300, 701, 725, 785, 1888, 1954, 2132, 2436, 2495
SseBI AGGCCT 2 cut(s) 916, 2618
SspDI GGCGCC 1 cut(s) 2914
SspI AATATT 1 cut(s) 812
SspMI CTAG 5 cut(s) 759, 983, 1227, 1461, 2510
SstI GAGCTC 1 cut(s) 2490
StuI AGGCCT 2 cut(s) 916, 2618
StyI CCWWGG 2 cut(s) 622, 1906
TaaI ACNGT 6 cut(s) 481, 1320, 1435, 1471, 1865, 2555
TaiI ACGT 5 cut(s) 147, 217, 454, 2170, 2799
TaqII GACCGA 1 cut(s) 2913
TasI AATT 9 cut(s) 300, 701, 725, 785, 1888, 1954, 2132, 2436, 2495
TauI GCSGC 5 cut(s) 616, 864, 2561, 2663, 2717
TfiI GAWTC 2 cut(s) 592, 943
Tru1I TTAA 2 cut(s) 261, 789
Tru9I TTAA 2 cut(s) 261, 789
TscAI CASTG 5 cut(s) 111, 1342, 2202, 2737, 2926
TseFI GTSAC 1 cut(s) 1456
TseI GCWGC 5 cut(s) 1490, 1646, 1654, 2230, 2233
Tsp45I GTSAC 1 cut(s) 1456
TspDTI ATGAA 2 cut(s) 114, 1967
TspGWI ACGGA 5 cut(s) 212, 784, 1095, 1178, 2636
TspMI CCCGGG 1 cut(s) 2277
TspRI CASTG 5 cut(s) 111, 1342, 2202, 2737, 2926
Vha464I CTTAAG 1 cut(s) 260
VpaK11BI GGWCC 4 cut(s) 78, 1141, 2215, 2323
XagI CCTNNNNNAGG 1 cut(s) 626
XapI RAATTY 2 cut(s) 785, 1888
XcmI CCANNNNNNNNNTGG 2 cut(s) 1348, 1840
XhoI CTCGAG 6 cut(s) 468, 526, 1593, 1698, 2489, 2800
XmaI CCCGGG 1 cut(s) 2277
XmiI GTMKAC 1 cut(s) 1437
XspI CTAG 5 cut(s) 759, 983, 1227, 1461, 2510
ZraI GACGTC 1 cut(s) 2168
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.