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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 335 |
| AccBSI | CCGCTC | 1 cut(s) | 115 |
| AccII | CGCG | 1 cut(s) | 296 |
| AciI | CCGC | 6 cut(s) | 73, 115, 384, 404, 425, 515 |
| AclWI | GGATC | 1 cut(s) | 48 |
| AcvI | CACGTG | 1 cut(s) | 521 |
| AcyI | GRCGYC | 1 cut(s) | 314 |
| AfaI | GTAC | 1 cut(s) | 453 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 222, 309, 345 |
| AgsI | TTSAA | 4 cut(s) | 175, 229, 268, 374 |
| AluBI | AGCT | 6 cut(s) | 17, 25, 53, 109, 327, 490 |
| AluI | AGCT | 6 cut(s) | 17, 25, 53, 109, 327, 490 |
| Alw21I | GWGCWC | 3 cut(s) | 19, 27, 329 |
| Alw26I | GTCTC | 2 cut(s) | 128, 501 |
| AlwI | GGATC | 1 cut(s) | 48 |
| Ama87I | CYCGRG | 1 cut(s) | 441 |
| AoxI | GGCC | 1 cut(s) | 498 |
| ApeKI | GCWGC | 1 cut(s) | 208 |
| AspLEI | GCGC | 2 cut(s) | 275, 296 |
| AspS9I | GGNCC | 2 cut(s) | 190, 300 |
| AvaI | CYCGRG | 1 cut(s) | 441 |
| AvaII | GGWCC | 2 cut(s) | 190, 300 |
| BanI | GGYRCC | 1 cut(s) | 335 |
| BanII | GRGCYC | 3 cut(s) | 19, 27, 329 |
| BbrPI | CACGTG | 1 cut(s) | 521 |
| Bbv12I | GWGCWC | 3 cut(s) | 19, 27, 329 |
| BbvI | GCAGC | 1 cut(s) | 220 |
| BccI | CCATC | 2 cut(s) | 80, 97 |
| BcoDI | GTCTC | 2 cut(s) | 128, 501 |
| BfaI | CTAG | 2 cut(s) | 110, 449 |
| BfoI | RGCGCY | 1 cut(s) | 276 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 384 |
| BisI | GCNGC | 3 cut(s) | 209, 385, 516 |
| BlsI | GCNGC | 3 cut(s) | 210, 386, 517 |
| Bme18I | GGWCC | 2 cut(s) | 190, 300 |
| BmeT110I | CYCGRG | 1 cut(s) | 441 |
| BmgT120I | GGNCC | 2 cut(s) | 190, 300 |
| BmiI | GGNNCC | 1 cut(s) | 337 |
| BpuEI | CTTGAG | 1 cut(s) | 382 |
| BsaAI | YACGTR | 1 cut(s) | 521 |
| BsaHI | GRCGYC | 1 cut(s) | 314 |
| BsaJI | CCNNGG | 5 cut(s) | 28, 216, 331, 379, 461 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 222, 309, 345 |
| BseDI | CCNNGG | 5 cut(s) | 28, 216, 331, 379, 461 |
| BseGI | GGATG | 3 cut(s) | 108, 247, 433 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 222, 309, 345 |
| BseRI | GAGGAG | 5 cut(s) | 23, 112, 146, 170, 478 |
| BseXI | GCAGC | 1 cut(s) | 220 |
| Bsh1236I | CGCG | 1 cut(s) | 296 |
| Bsh1285I | CGRYCG | 1 cut(s) | 119 |
| BshFI | GGCC | 1 cut(s) | 500 |
| BshNI | GGYRCC | 1 cut(s) | 335 |
| BsiEI | CGRYCG | 1 cut(s) | 119 |
| BsiHKAI | GWGCWC | 3 cut(s) | 19, 27, 329 |
| BsiHKCI | CYCGRG | 1 cut(s) | 441 |
| BslFI | GGGAC | 1 cut(s) | 325 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 222, 309, 345 |
| BsmAI | GTCTC | 2 cut(s) | 128, 501 |
| BsmBI | CGTCTC | 1 cut(s) | 501 |
| BsmFI | GGGAC | 1 cut(s) | 325 |
| BsmI | GAATGC | 2 cut(s) | 380, 470 |
| BsnI | GGCC | 1 cut(s) | 500 |
| BsoBI | CYCGRG | 1 cut(s) | 441 |
| Bsp1286I | GDGCHC | 3 cut(s) | 19, 27, 329 |
| Bsp143I | GATC | 1 cut(s) | 40 |
| BspACI | CCGC | 6 cut(s) | 73, 115, 384, 404, 425, 515 |
| BspANI | GGCC | 1 cut(s) | 500 |
| BspFNI | CGCG | 1 cut(s) | 296 |
| BspHI | TCATGA | 1 cut(s) | 19 |
| BspLI | GGNNCC | 1 cut(s) | 337 |
| BspPI | GGATC | 1 cut(s) | 48 |
| BspT107I | GGYRCC | 1 cut(s) | 335 |
| BsrBI | CCGCTC | 1 cut(s) | 115 |
| BssECI | CCNNGG | 5 cut(s) | 28, 216, 331, 379, 461 |
| BssMI | GATC | 1 cut(s) | 40 |
| BssNI | GRCGYC | 1 cut(s) | 314 |
| BssT1I | CCWWGG | 3 cut(s) | 28, 331, 379 |
| Bst4CI | ACNGT | 3 cut(s) | 47, 127, 512 |
| BstACI | GRCGYC | 1 cut(s) | 314 |
| BstBAI | YACGTR | 1 cut(s) | 521 |
| BstC8I | GCNNGC | 3 cut(s) | 75, 213, 277 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 343 |
| BstF5I | GGATG | 3 cut(s) | 108, 247, 433 |
| BstFNI | CGCG | 1 cut(s) | 296 |
| BstH2I | RGCGCY | 1 cut(s) | 276 |
| BstHHI | GCGC | 2 cut(s) | 275, 296 |
| BstKTI | GATC | 1 cut(s) | 43 |
| BstMAI | GTCTC | 2 cut(s) | 128, 501 |
| BstMBI | GATC | 1 cut(s) | 40 |
| BstMCI | CGRYCG | 1 cut(s) | 119 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 384, 521 |
| BstUI | CGCG | 1 cut(s) | 296 |
| BstV1I | GCAGC | 1 cut(s) | 220 |
| BsuRI | GGCC | 1 cut(s) | 500 |
| BtgZI | GCGATG | 1 cut(s) | 341 |
| BtsCI | GGATG | 3 cut(s) | 108, 247, 433 |
| Cac8I | GCNNGC | 3 cut(s) | 75, 213, 277 |
| CciI | TCATGA | 1 cut(s) | 19 |
| CfoI | GCGC | 2 cut(s) | 275, 296 |
| Cfr13I | GGNCC | 2 cut(s) | 190, 300 |
| CseI | GACGC | 1 cut(s) | 322 |
| Csp6I | GTAC | 1 cut(s) | 452 |
| CviAII | CATG | 4 cut(s) | 20, 59, 280, 397 |
| CviQI | GTAC | 1 cut(s) | 452 |
| DpnI | GATC | 1 cut(s) | 42 |
| DpnII | GATC | 1 cut(s) | 40 |
| EciI | GGCGGA | 1 cut(s) | 419 |
| Ecl136II | GAGCTC | 3 cut(s) | 17, 25, 327 |
| Eco130I | CCWWGG | 3 cut(s) | 28, 331, 379 |
| Eco24I | GRGCYC | 3 cut(s) | 19, 27, 329 |
| Eco47I | GGWCC | 2 cut(s) | 190, 300 |
| Eco53kI | GAGCTC | 3 cut(s) | 17, 25, 327 |
| Eco72I | CACGTG | 1 cut(s) | 521 |
| Eco88I | CYCGRG | 1 cut(s) | 441 |
| EcoICRI | GAGCTC | 3 cut(s) | 17, 25, 327 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 343 |
| EcoT14I | CCWWGG | 3 cut(s) | 28, 331, 379 |
| EcoT38I | GRGCYC | 3 cut(s) | 19, 27, 329 |
| ErhI | CCWWGG | 3 cut(s) | 28, 331, 379 |
| Esp3I | CGTCTC | 1 cut(s) | 501 |
| FaeI | CATG | 4 cut(s) | 23, 62, 283, 400 |
| FaiI | YATR | 4 cut(s) | 21, 60, 281, 398 |
| FaqI | GGGAC | 1 cut(s) | 325 |
| FatI | CATG | 4 cut(s) | 19, 58, 279, 396 |
| FauI | CCCGC | 1 cut(s) | 66 |
| Fnu4HI | GCNGC | 3 cut(s) | 209, 385, 516 |
| FokI | GGATG | 3 cut(s) | 115, 254, 440 |
| FriOI | GRGCYC | 3 cut(s) | 19, 27, 329 |
| Fsp4HI | GCNGC | 3 cut(s) | 209, 385, 516 |
| FspBI | CTAG | 2 cut(s) | 110, 449 |
| GlaI | GCGC | 2 cut(s) | 274, 295 |
| GluI | GCNGC | 3 cut(s) | 209, 385, 516 |
| HaeII | RGCGCY | 1 cut(s) | 276 |
| HaeIII | GGCC | 1 cut(s) | 500 |
| HgaI | GACGC | 1 cut(s) | 322 |
| HhaI | GCGC | 2 cut(s) | 275, 296 |
| Hin1I | GRCGYC | 1 cut(s) | 314 |
| Hin1II | CATG | 4 cut(s) | 23, 62, 283, 400 |
| Hin6I | GCGC | 2 cut(s) | 273, 294 |
| HinP1I | GCGC | 2 cut(s) | 273, 294 |
| HincII | GTYRAC | 1 cut(s) | 123 |
| HindII | GTYRAC | 1 cut(s) | 123 |
| HindIII | AAGCTT | 1 cut(s) | 488 |
| HinfI | GANTC | 3 cut(s) | 79, 136, 179 |
| Hpy166II | GTNNAC | 1 cut(s) | 123 |
| Hpy188I | TCNGA | 1 cut(s) | 495 |
| Hpy188III | TCNNGA | 4 cut(s) | 20, 83, 310, 441 |
| Hpy8I | GTNNAC | 1 cut(s) | 123 |
| HpyAV | CCTTC | 7 cut(s) | 143, 223, 262, 385, 394, 412, 490 |
| HpyCH4III | ACNGT | 3 cut(s) | 47, 127, 512 |
| HpyCH4IV | ACGT | 1 cut(s) | 520 |
| HpyCH4V | TGCA | 4 cut(s) | 208, 279, 343, 470 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 384, 521 |
| HpySE526I | ACGT | 1 cut(s) | 520 |
| Hsp92I | GRCGYC | 1 cut(s) | 314 |
| Hsp92II | CATG | 4 cut(s) | 23, 62, 283, 400 |
| HspAI | GCGC | 2 cut(s) | 273, 294 |
| Kzo9I | GATC | 1 cut(s) | 40 |
| LmnI | GCTCC | 5 cut(s) | 30, 106, 324, 332, 406 |
| Lsp1109I | GCAGC | 1 cut(s) | 220 |
| MaeI | CTAG | 2 cut(s) | 110, 449 |
| MaeII | ACGT | 1 cut(s) | 520 |
| MalI | GATC | 1 cut(s) | 42 |
| MbiI | CCGCTC | 1 cut(s) | 115 |
| MboI | GATC | 1 cut(s) | 40 |
| MboII | GAAGA | 1 cut(s) | 74 |
| MhlI | GDGCHC | 3 cut(s) | 19, 27, 329 |
| MlyI | GAGTC | 1 cut(s) | 130 |
| MmeI | TCCRAC | 3 cut(s) | 18, 266, 302 |
| MseI | TTAA | 1 cut(s) | 413 |
| Mva1269I | GAATGC | 2 cut(s) | 380, 470 |
| MvnI | CGCG | 1 cut(s) | 296 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 384, 521 |
| NdeII | GATC | 1 cut(s) | 40 |
| NlaIII | CATG | 4 cut(s) | 23, 62, 283, 400 |
| NlaIV | GGNNCC | 1 cut(s) | 337 |
| NmeAIII | GCCGAG | 1 cut(s) | 241 |
| PaeR7I | CTCGAG | 1 cut(s) | 441 |
| PagI | TCATGA | 1 cut(s) | 19 |
| PctI | GAATGC | 2 cut(s) | 380, 470 |
| PfeI | GAWTC | 2 cut(s) | 79, 179 |
| PkrI | GCNGC | 3 cut(s) | 210, 386, 517 |
| PleI | GAGTC | 1 cut(s) | 130 |
| PmaCI | CACGTG | 1 cut(s) | 521 |
| PmlI | CACGTG | 1 cut(s) | 521 |
| PpsI | GAGTC | 1 cut(s) | 130 |
| Ppu21I | YACGTR | 1 cut(s) | 521 |
| Psp124BI | GAGCTC | 3 cut(s) | 19, 27, 329 |
| PspCI | CACGTG | 1 cut(s) | 521 |
| PspN4I | GGNNCC | 1 cut(s) | 337 |
| PspPI | GGNCC | 2 cut(s) | 190, 300 |
| RsaI | GTAC | 1 cut(s) | 453 |
| RsaNI | GTAC | 1 cut(s) | 452 |
| SacI | GAGCTC | 3 cut(s) | 19, 27, 329 |
| SaqAI | TTAA | 1 cut(s) | 413 |
| SatI | GCNGC | 3 cut(s) | 209, 385, 516 |
| Sau3AI | GATC | 1 cut(s) | 40 |
| Sau96I | GGNCC | 2 cut(s) | 190, 300 |
| SchI | GAGTC | 1 cut(s) | 130 |
| SduI | GDGCHC | 3 cut(s) | 19, 27, 329 |
| Sfr274I | CTCGAG | 1 cut(s) | 441 |
| SinI | GGWCC | 2 cut(s) | 190, 300 |
| SlaI | CTCGAG | 1 cut(s) | 441 |
| SmlI | CTYRAG | 2 cut(s) | 361, 441 |
| SmoI | CTYRAG | 2 cut(s) | 361, 441 |
| SsiI | CCGC | 6 cut(s) | 73, 115, 384, 404, 425, 515 |
| SspMI | CTAG | 2 cut(s) | 110, 449 |
| SstI | GAGCTC | 3 cut(s) | 19, 27, 329 |
| StyI | CCWWGG | 3 cut(s) | 28, 331, 379 |
| TaaI | ACNGT | 3 cut(s) | 47, 127, 512 |
| TaiI | ACGT | 1 cut(s) | 523 |
| TaqI | TCGA | 1 cut(s) | 442 |
| TaqII | GACCGA | 1 cut(s) | 519 |
| TauI | GCSGC | 2 cut(s) | 387, 518 |
| TfiI | GAWTC | 2 cut(s) | 79, 179 |
| Tru1I | TTAA | 1 cut(s) | 413 |
| Tru9I | TTAA | 1 cut(s) | 413 |
| TseI | GCWGC | 1 cut(s) | 208 |
| TspDTI | ATGAA | 5 cut(s) | 75, 344, 413, 444, 463 |
| VpaK11BI | GGWCC | 2 cut(s) | 190, 300 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 343 |
| XhoI | CTCGAG | 1 cut(s) | 441 |
| XspI | CTAG | 2 cut(s) | 110, 449 |