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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 82, 233 |
| AccBSI | CCGCTC | 1 cut(s) | 317 |
| AciI | CCGC | 5 cut(s) | 139, 147, 308, 317, 336 |
| AclWI | GGATC | 2 cut(s) | 123, 261 |
| AcsI | RAATTY | 1 cut(s) | 18 |
| AcvI | CACGTG | 1 cut(s) | 230 |
| AdeI | CACNNNGTG | 1 cut(s) | 233 |
| AfaI | GTAC | 1 cut(s) | 296 |
| AfeI | AGCGCT | 1 cut(s) | 253 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 210, 374 |
| AgsI | TTSAA | 1 cut(s) | 103 |
| AluBI | AGCT | 1 cut(s) | 354 |
| AluI | AGCT | 1 cut(s) | 354 |
| Alw21I | GWGCWC | 1 cut(s) | 195 |
| Alw26I | GTCTC | 1 cut(s) | 200 |
| AlwI | GGATC | 2 cut(s) | 123, 261 |
| Ama87I | CYCGRG | 2 cut(s) | 47, 203 |
| Aor51HI | AGCGCT | 1 cut(s) | 253 |
| AoxI | GGCC | 4 cut(s) | 77, 136, 197, 324 |
| ApeKI | GCWGC | 1 cut(s) | 249 |
| ApoI | RAATTY | 1 cut(s) | 18 |
| AspLEI | GCGC | 3 cut(s) | 123, 170, 254 |
| AspS9I | GGNCC | 3 cut(s) | 136, 198, 310 |
| AsuC2I | CCSGG | 1 cut(s) | 369 |
| AsuHPI | GGTGA | 2 cut(s) | 353, 419 |
| AvaI | CYCGRG | 2 cut(s) | 47, 203 |
| AvaII | GGWCC | 1 cut(s) | 310 |
| BanI | GGYRCC | 2 cut(s) | 82, 233 |
| BbrPI | CACGTG | 1 cut(s) | 230 |
| Bbv12I | GWGCWC | 1 cut(s) | 195 |
| BbvI | GCAGC | 1 cut(s) | 261 |
| BccI | CCATC | 3 cut(s) | 274, 278, 398 |
| BceAI | ACGGC | 2 cut(s) | 255, 311 |
| BcnI | CCSGG | 1 cut(s) | 369 |
| BcoDI | GTCTC | 1 cut(s) | 200 |
| BfoI | RGCGCY | 2 cut(s) | 171, 255 |
| BisI | GCNGC | 3 cut(s) | 139, 250, 318 |
| BlsI | GCNGC | 3 cut(s) | 140, 251, 319 |
| Bme1390I | CCNGG | 1 cut(s) | 369 |
| Bme18I | GGWCC | 1 cut(s) | 310 |
| BmeT110I | CYCGRG | 2 cut(s) | 47, 203 |
| BmgT120I | GGNCC | 3 cut(s) | 136, 198, 310 |
| BmiI | GGNNCC | 4 cut(s) | 84, 200, 235, 243 |
| BmrFI | CCNGG | 1 cut(s) | 369 |
| BmsI | GCATC | 1 cut(s) | 96 |
| Bpu10I | CCTNAGC | 1 cut(s) | 110 |
| BpuMI | CCSGG | 1 cut(s) | 369 |
| Bsa29I | ATCGAT | 1 cut(s) | 265 |
| BsaAI | YACGTR | 1 cut(s) | 230 |
| BsaJI | CCNNGG | 4 cut(s) | 26, 86, 132, 237 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 210, 374 |
| Bse118I | RCCGGY | 3 cut(s) | 79, 141, 195 |
| BseCI | ATCGAT | 1 cut(s) | 265 |
| BseDI | CCNNGG | 4 cut(s) | 26, 86, 132, 237 |
| BseGI | GGATG | 1 cut(s) | 289 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 210, 374 |
| BseRI | GAGGAG | 1 cut(s) | 234 |
| BseXI | GCAGC | 1 cut(s) | 261 |
| Bsh1285I | CGRYCG | 1 cut(s) | 390 |
| BshFI | GGCC | 4 cut(s) | 79, 138, 199, 326 |
| BshNI | GGYRCC | 2 cut(s) | 82, 233 |
| BshVI | ATCGAT | 1 cut(s) | 265 |
| BsiEI | CGRYCG | 1 cut(s) | 390 |
| BsiHKAI | GWGCWC | 1 cut(s) | 195 |
| BsiHKCI | CYCGRG | 2 cut(s) | 47, 203 |
| BsiSI | CCGG | 4 cut(s) | 80, 142, 196, 369 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 210, 374 |
| BsmAI | GTCTC | 1 cut(s) | 200 |
| BsnI | GGCC | 4 cut(s) | 79, 138, 199, 326 |
| BsoBI | CYCGRG | 2 cut(s) | 47, 203 |
| Bsp1286I | GDGCHC | 1 cut(s) | 195 |
| Bsp143I | GATC | 3 cut(s) | 115, 266, 387 |
| BspACI | CCGC | 5 cut(s) | 139, 147, 308, 317, 336 |
| BspANI | GGCC | 4 cut(s) | 79, 138, 199, 326 |
| BspDI | ATCGAT | 1 cut(s) | 265 |
| BspLI | GGNNCC | 4 cut(s) | 84, 200, 235, 243 |
| BspPI | GGATC | 2 cut(s) | 123, 261 |
| BspT107I | GGYRCC | 2 cut(s) | 82, 233 |
| BsrBI | CCGCTC | 1 cut(s) | 317 |
| BsrFI | RCCGGY | 3 cut(s) | 79, 141, 195 |
| BssAI | RCCGGY | 3 cut(s) | 79, 141, 195 |
| BssECI | CCNNGG | 4 cut(s) | 26, 86, 132, 237 |
| BssMI | GATC | 3 cut(s) | 115, 266, 387 |
| BssT1I | CCWWGG | 1 cut(s) | 132 |
| Bst4CI | ACNGT | 2 cut(s) | 66, 303 |
| Bst6I | CTCTTC | 1 cut(s) | 68 |
| BstBAI | YACGTR | 1 cut(s) | 230 |
| BstC8I | GCNNGC | 3 cut(s) | 162, 166, 191 |
| BstDEI | CTNAG | 1 cut(s) | 110 |
| BstDSI | CCRYGG | 1 cut(s) | 237 |
| BstF5I | GGATG | 1 cut(s) | 289 |
| BstH2I | RGCGCY | 2 cut(s) | 171, 255 |
| BstHHI | GCGC | 3 cut(s) | 123, 170, 254 |
| BstKTI | GATC | 3 cut(s) | 118, 269, 390 |
| BstMAI | GTCTC | 1 cut(s) | 200 |
| BstMBI | GATC | 3 cut(s) | 115, 266, 387 |
| BstMCI | CGRYCG | 1 cut(s) | 390 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 144, 190, 314, 323 |
| BstNSI | RCATGY | 1 cut(s) | 184 |
| BstSCI | CCNGG | 1 cut(s) | 367 |
| BstV1I | GCAGC | 1 cut(s) | 261 |
| Bsu15I | ATCGAT | 1 cut(s) | 265 |
| BsuRI | GGCC | 4 cut(s) | 79, 138, 199, 326 |
| BsuTUI | ATCGAT | 1 cut(s) | 265 |
| BtgI | CCRYGG | 1 cut(s) | 237 |
| BtsCI | GGATG | 1 cut(s) | 289 |
| BtsI | GCAGTG | 1 cut(s) | 379 |
| BtsIMutI | CAGTG | 1 cut(s) | 379 |
| Cac8I | GCNNGC | 3 cut(s) | 162, 166, 191 |
| CfoI | GCGC | 3 cut(s) | 123, 170, 254 |
| Cfr10I | RCCGGY | 3 cut(s) | 79, 141, 195 |
| Cfr13I | GGNCC | 3 cut(s) | 136, 198, 310 |
| ClaI | ATCGAT | 1 cut(s) | 265 |
| CpoI | CGGWCCG | 1 cut(s) | 310 |
| Csp6I | GTAC | 1 cut(s) | 295 |
| CspI | CGGWCCG | 1 cut(s) | 310 |
| CviAII | CATG | 4 cut(s) | 94, 181, 210, 289 |
| CviJI | RGCY | 8 cut(s) | 79, 138, 199, 242, 326, 354, 359, 401 |
| CviKI_1 | RGCY | 8 cut(s) | 79, 138, 199, 242, 326, 354, 359, 401 |
| CviQI | GTAC | 1 cut(s) | 295 |
| DdeI | CTNAG | 1 cut(s) | 110 |
| DpnI | GATC | 3 cut(s) | 117, 268, 389 |
| DpnII | GATC | 3 cut(s) | 115, 266, 387 |
| DraIII | CACNNNGTG | 1 cut(s) | 233 |
| Eam1104I | CTCTTC | 1 cut(s) | 68 |
| EarI | CTCTTC | 1 cut(s) | 68 |
| EciI | GGCGGA | 1 cut(s) | 323 |
| Eco130I | CCWWGG | 1 cut(s) | 132 |
| Eco47I | GGWCC | 1 cut(s) | 310 |
| Eco47III | AGCGCT | 1 cut(s) | 253 |
| Eco72I | CACGTG | 1 cut(s) | 230 |
| Eco88I | CYCGRG | 2 cut(s) | 47, 203 |
| EcoT14I | CCWWGG | 1 cut(s) | 132 |
| ErhI | CCWWGG | 1 cut(s) | 132 |
| FaeI | CATG | 4 cut(s) | 97, 184, 213, 292 |
| FaiI | YATR | 5 cut(s) | 39, 95, 182, 211, 290 |
| FatI | CATG | 4 cut(s) | 93, 180, 209, 288 |
| FauI | CCCGC | 1 cut(s) | 140 |
| Fnu4HI | GCNGC | 3 cut(s) | 139, 250, 318 |
| FokI | GGATG | 1 cut(s) | 296 |
| Fsp4HI | GCNGC | 3 cut(s) | 139, 250, 318 |
| GlaI | GCGC | 3 cut(s) | 122, 169, 253 |
| GluI | GCNGC | 3 cut(s) | 139, 250, 318 |
| HaeII | RGCGCY | 2 cut(s) | 171, 255 |
| HaeIII | GGCC | 4 cut(s) | 79, 138, 199, 326 |
| HapII | CCGG | 4 cut(s) | 80, 142, 196, 369 |
| HhaI | GCGC | 3 cut(s) | 123, 170, 254 |
| Hin1II | CATG | 4 cut(s) | 97, 184, 213, 292 |
| Hin6I | GCGC | 3 cut(s) | 121, 168, 252 |
| HinP1I | GCGC | 3 cut(s) | 121, 168, 252 |
| HindIII | AAGCTT | 1 cut(s) | 352 |
| HpaII | CCGG | 4 cut(s) | 80, 142, 196, 369 |
| HphI | GGTGA | 2 cut(s) | 353, 419 |
| Hpy188I | TCNGA | 1 cut(s) | 27 |
| Hpy188III | TCNNGA | 2 cut(s) | 47, 103 |
| Hpy99I | CGWCG | 1 cut(s) | 17 |
| HpyAV | CCTTC | 1 cut(s) | 316 |
| HpyCH4III | ACNGT | 2 cut(s) | 66, 303 |
| HpyCH4IV | ACGT | 1 cut(s) | 229 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 144, 190, 314, 323 |
| HpyF3I | CTNAG | 1 cut(s) | 110 |
| HpySE526I | ACGT | 1 cut(s) | 229 |
| Hsp92II | CATG | 4 cut(s) | 97, 184, 213, 292 |
| HspAI | GCGC | 3 cut(s) | 121, 168, 252 |
| Kzo9I | GATC | 3 cut(s) | 115, 266, 387 |
| LmnI | GCTCC | 2 cut(s) | 157, 247 |
| LpnPI | CCDG | 4 cut(s) | 93, 155, 209, 382 |
| Lsp1109I | GCAGC | 1 cut(s) | 261 |
| LweI | GCATC | 1 cut(s) | 96 |
| MaeII | ACGT | 1 cut(s) | 229 |
| MaeIII | GTNAC | 3 cut(s) | 221, 271, 341 |
| MalI | GATC | 3 cut(s) | 117, 268, 389 |
| MbiI | CCGCTC | 1 cut(s) | 317 |
| MboI | GATC | 3 cut(s) | 115, 266, 387 |
| MboII | GAAGA | 1 cut(s) | 85 |
| MhlI | GDGCHC | 1 cut(s) | 195 |
| MluCI | AATT | 1 cut(s) | 18 |
| MnlI | CCTC | 9 cut(s) | 21, 63, 69, 81, 90, 182, 255, 285, 341 |
| MspI | CCGG | 4 cut(s) | 80, 142, 196, 369 |
| MspR9I | CCNGG | 1 cut(s) | 369 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 144, 190, 314, 323 |
| NciI | CCSGG | 1 cut(s) | 369 |
| NdeII | GATC | 3 cut(s) | 115, 266, 387 |
| NlaIII | CATG | 4 cut(s) | 97, 184, 213, 292 |
| NlaIV | GGNNCC | 4 cut(s) | 84, 200, 235, 243 |
| NmeAIII | GCCGAG | 2 cut(s) | 111, 165 |
| NmuCI | GTSAC | 2 cut(s) | 271, 341 |
| NspI | RCATGY | 1 cut(s) | 184 |
| PaeR7I | CTCGAG | 1 cut(s) | 47 |
| PkrI | GCNGC | 3 cut(s) | 140, 251, 319 |
| Ple19I | CGATCG | 1 cut(s) | 390 |
| PmaCI | CACGTG | 1 cut(s) | 230 |
| PmlI | CACGTG | 1 cut(s) | 230 |
| Ppu21I | YACGTR | 1 cut(s) | 230 |
| PspCI | CACGTG | 1 cut(s) | 230 |
| PspN4I | GGNNCC | 4 cut(s) | 84, 200, 235, 243 |
| PspPI | GGNCC | 3 cut(s) | 136, 198, 310 |
| PvuI | CGATCG | 1 cut(s) | 390 |
| RsaI | GTAC | 1 cut(s) | 296 |
| RsaNI | GTAC | 1 cut(s) | 295 |
| Rsr2I | CGGWCCG | 1 cut(s) | 310 |
| RsrII | CGGWCCG | 1 cut(s) | 310 |
| SatI | GCNGC | 3 cut(s) | 139, 250, 318 |
| Sau3AI | GATC | 3 cut(s) | 115, 266, 387 |
| Sau96I | GGNCC | 3 cut(s) | 136, 198, 310 |
| ScrFI | CCNGG | 1 cut(s) | 369 |
| SduI | GDGCHC | 1 cut(s) | 195 |
| SetI | ASST | 5 cut(s) | 32, 101, 232, 296, 356 |
| SfaNI | GCATC | 1 cut(s) | 96 |
| Sfr274I | CTCGAG | 1 cut(s) | 47 |
| SgrAI | CRCCGGYG | 1 cut(s) | 141 |
| SinI | GGWCC | 1 cut(s) | 310 |
| SlaI | CTCGAG | 1 cut(s) | 47 |
| SmlI | CTYRAG | 1 cut(s) | 47 |
| SmoI | CTYRAG | 1 cut(s) | 47 |
| Sse9I | AATT | 1 cut(s) | 18 |
| SsiI | CCGC | 5 cut(s) | 139, 147, 308, 317, 336 |
| StyD4I | CCNGG | 1 cut(s) | 367 |
| StyI | CCWWGG | 1 cut(s) | 132 |
| TaaI | ACNGT | 2 cut(s) | 66, 303 |
| TaiI | ACGT | 1 cut(s) | 232 |
| TaqI | TCGA | 3 cut(s) | 48, 265, 386 |
| TaqII | GACCGA | 1 cut(s) | 327 |
| TasI | AATT | 1 cut(s) | 18 |
| TauI | GCSGC | 2 cut(s) | 141, 320 |
| TscAI | CASTG | 1 cut(s) | 379 |
| TseFI | GTSAC | 2 cut(s) | 271, 341 |
| TseI | GCWGC | 1 cut(s) | 249 |
| Tsp45I | GTSAC | 2 cut(s) | 271, 341 |
| TspDTI | ATGAA | 1 cut(s) | 248 |
| TspGWI | ACGGA | 2 cut(s) | 259, 360 |
| TspRI | CASTG | 1 cut(s) | 379 |
| VpaK11BI | GGWCC | 1 cut(s) | 310 |
| XapI | RAATTY | 1 cut(s) | 18 |
| XceI | RCATGY | 1 cut(s) | 184 |
| XhoI | CTCGAG | 1 cut(s) | 47 |