Rroxscaffold_2G00129350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000075
Physical Location & Seq
Reverse (-)
65175814 .. 65178995
3182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129350.1

Sequence Viewer

Length: 1428 bp
ATGGAACCCCTAGTAGGGTTGAGCATCTCACGAGAGGTTGTGGGACCCGAGGTTCCCAAGGTGGGGAATGTCGAGTTGTTGGAGGTTCCTCATTTGCCGGTGTCGCCTAATGCGTTGAGCCGGCTAATGGGGGTTTTTTGTTATGGAAGCTCGGCGGGGAGCAATGTCCAAGCATCAACGAGTTTAACTCCATCTTCAAGATGCGGTATTCGACGAAGGCCGGGGACAGTGGTTTTTAGGGCGCGCAACGGTGCGATTATCAAGGACCTCCCATCTAACATTTATGCTCCTGGAGGAGCAGGCCTTGCTGGTTGGAGGCCTTTGGCGAACCCGGATATGGTGCATTGGGCTCCTACTTGTTTCCGGTCTATCTGTGAGTATCGTGATTGCGTTTTTGAATACCTCAACAAGCAAGGCGAGGAGCAGGCGGGCGAAGGGCACGTGGCTCGGGGCCACCAACGGCCTAGTGCCGAGGTGACGACCCTTTCTCCGGAGCGGGGGGATGAGACGAGTCGGCTGCCGAGGTCCCTAATGCTCAACGAGGAAGTTGGGGAGGACGGCGTCGGGGGTGTTCAAGTTTCCAAGACGGTGGCCCTTGTTCGGGCTAGTGAGGTTGTTGGGGATCTTGAACGTACTCTCGGTGAGATTGGGATTACGGATGGTGCCATTTTACACATGGTTGCCGATTTGCACAATTGCCATCGTGATCGTAGCCATGTGAATGCGAGGATCCTCGTCTTAGGAGATCGCTCGGCTTCGGGGGAGTTAAATGTCGAGAGGGAGCGGTCACGTGAGCTTCGGGGTGCTTTGGATCGCGGCCAGGCGGGACGTGAGGAGATGAGGCGGGCGATTGATGATGGGATCGCGAGAAGGATGGAATTGGAGCGGTCACTTGTAGTGGAGGAGTCTCGGAAGCGGGAGGCTAAGGATGTTGTTGCCCTTTGTGGGAGTCAAATTCGGACTTGGCCGGCAAGTTACGGTGGGCTAAAGTTGAAGCATGTTGACAAGCTTCACAAAGCCAAGCGAGATGGCGCGGCAAGGGTGGTGGATCATTATCTTCTGTCGTCCAATTTCCAAGATAAGATAAATAAGGCCTTCTTGGATAGGGCCTTGCACTTGATTCAGGACGGTATCATTGCTGGTTGGATTGATCAAGATAAAATGGTCCGTGATATGCAAGCAAAGAAAGCGGCGAGATCACGAAGCCGGTGCGCGAGTGACGGTCGTGGCGGGGGGATTGTTATCCGCGAACCATCTATTGCCATTGAGCGCGTCTCTAGCCATGCTAGCAATCGCGAGGTGGATGGTACTCATGTGGACAAGCAAGGGGAGTGCGCGTGGTTGTCGGGGAATGTGCAAGAGGGCGAGGATGTTGGAGAGCGAGACGCGACAGTGGAGCGGGTGCACGGTGCGAAGGGCGACACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

475

Amino Acids

51.8

Weight (kDa)

7.25

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000075)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0348161 RchiOBHm_Chr1g0367481 RchiOBHm_Chr1g0368431 RchiOBHm_Chr2g0116021 RchiOBHm_Chr2g0133961 RchiOBHm_Chr4g0390151 RchiOBHm_Chr4g0402771 RchiOBHm_Chr4g0419581 RchiOBHm_Chr5g0054351 RchiOBHm_Chr6g0278891 RchiOBHm_Chr7g0201941 RchiOBHm_Chr7g0242761
rosa_laevigata RLG00000002487 RLG00000002488 RLG00000003412 RLG00000003415 RLG00000013607 RLG00000018981 RLG00000018982 RLG00000034520 RLG00000034521
rosa_multiflora Rmu_co8024510.1_g000001 Rmu_co8121892.1_g000001 Rmu_co8133046.1_g000001 Rmu_co8158032.1_g000001 Rmu_co8181114.1_g000001 Rmu_co8202532.1_g000001 Rmu_co8331471.1_g000001 Rmu_co8340209.1_g000001 Rmu_co8359899.1_g000001 Rmu_co8433657.1_g000002 Rmu_co8436419.1_g000002 Rmu_co8458211.1_g000002 Rmu_co8458731.1_g000002 Rmu_co8466361.1_g000001 Rmu_co8474565.1_g000001 Rmu_co8474565.1_g000002 Rmu_co8482201.1_g000001 Rmu_co8491967.1_g000003 Rmu_co8498095.1_g000001 Rmu_co8513217.1_g000002 Rmu_co8518257.1_g000001 Rmu_co8520425.1_g000003 Rmu_co8521283.1_g000003 Rmu_sc0000029.1_g000029 Rmu_sc0000082.1_g000019 Rmu_sc0000147.1_g000107 Rmu_sc0000212.1_g000005 Rmu_sc0000247.1_g000030 Rmu_sc0000367.1_g000175 Rmu_sc0000433.1_g000035 Rmu_sc0000538.1_g000038 Rmu_sc0000550.1_g000010 Rmu_sc0000635.1_g000007 Rmu_sc0000650.1_g000012 Rmu_sc0000652.1_g000009 Rmu_sc0000652.1_g000010 Rmu_sc0000742.1_g000010 Rmu_sc0000750.1_g000007 Rmu_sc0000750.1_g000008 Rmu_sc0000772.1_g000018 Rmu_sc0000830.1_g000026 Rmu_sc0000859.1_g000006 Rmu_sc0001190.1_g000039 Rmu_sc0001190.1_g000050 Rmu_sc0001190.1_g000051 Rmu_sc0001205.1_g000008 Rmu_sc0001294.1_g000025 Rmu_sc0001366.1_g000010 Rmu_sc0001373.1_g000036 Rmu_sc0001423.1_g000046 Rmu_sc0001788.1_g000014 Rmu_sc0001801.1_g000016 Rmu_sc0001849.1_g000032 Rmu_sc0001967.1_g000002 Rmu_sc0002082.1_g000066 Rmu_sc0002250.1_g000013 Rmu_sc0002322.1_g000039 Rmu_sc0002371.1_g000002 Rmu_sc0002522.1_g000036 Rmu_sc0002532.1_g000048 Rmu_sc0002669.1_g000065 Rmu_sc0002669.1_g000067 Rmu_sc0002669.1_g000069 Rmu_sc0002834.1_g000007 Rmu_sc0003226.1_g000070 Rmu_sc0003260.1_g000018 Rmu_sc0003313.1_g000007 Rmu_sc0003441.1_g000018 Rmu_sc0003490.1_g000008 Rmu_sc0003705.1_g000011 Rmu_sc0003737.1_g000013 Rmu_sc0003748.1_g000020 Rmu_sc0003910.1_g000015 Rmu_sc0003919.1_g000029 Rmu_sc0003919.1_g000031 Rmu_sc0004037.1_g000012 Rmu_sc0004099.1_g000003 Rmu_sc0004122.1_g000013 Rmu_sc0004402.1_g000013 Rmu_sc0004646.1_g000035 Rmu_sc0004688.1_g000024 Rmu_sc0004823.1_g000046 Rmu_sc0004869.1_g000003 Rmu_sc0004869.1_g000004 Rmu_sc0005132.1_g000035 Rmu_sc0005190.1_g000001 Rmu_sc0005229.1_g000005 Rmu_sc0005229.1_g000023 Rmu_sc0005363.1_g000034 Rmu_sc0005537.1_g000006 Rmu_sc0005657.1_g000024 Rmu_sc0005856.1_g000011 Rmu_sc0005856.1_g000012 Rmu_sc0005953.1_g000007 Rmu_sc0005971.1_g000015 Rmu_sc0006287.1_g000004 Rmu_sc0006315.1_g000014 Rmu_sc0006518.1_g000003 Rmu_sc0006695.1_g000066 Rmu_sc0006803.1_g000056 Rmu_sc0006822.1_g000002 Rmu_sc0006926.1_g000011 Rmu_sc0007560.1_g000008 Rmu_sc0007582.1_g000005 Rmu_sc0007618.1_g000025 Rmu_sc0007647.1_g000004 Rmu_sc0007656.1_g000013 Rmu_sc0007877.1_g000011 Rmu_sc0008528.1_g000005 Rmu_sc0008528.1_g000006 Rmu_sc0008749.1_g000004 Rmu_sc0008989.1_g000003 Rmu_sc0009120.1_g000010 Rmu_sc0009663.1_g000009 Rmu_sc0010035.1_g000001 Rmu_sc0010160.1_g000010 Rmu_sc0010160.1_g000011 Rmu_sc0010953.1_g000004 Rmu_sc0011008.1_g000006 Rmu_sc0011452.1_g000009 Rmu_sc0012746.1_g000014 Rmu_sc0013612.1_g000017 Rmu_sc0013951.1_g000011 Rmu_sc0014162.1_g000009 Rmu_sc0014162.1_g000010 Rmu_sc0016149.1_g000003 Rmu_sc0016418.1_g000008 Rmu_sc0016418.1_g000009 Rmu_sc0017353.1_g000001 Rmu_sc0017353.1_g000002 Rmu_sc0018537.1_g000012 Rmu_sc0019739.1_g000003 Rmu_sc0019739.1_g000004 Rmu_sc0020186.1_g000016 Rmu_sc0021611.1_g000001 Rmu_sc0022755.1_g000003 Rmu_sc0024226.1_g000006 Rmu_sc0025769.1_g000004 Rmu_sc0025769.1_g000005 Rmu_sc0030235.1_g000004 Rmu_sc0035508.1_g000007 Rmu_sc0036413.1_g000001 Rmu_sc0037646.1_g000001 Rmu_sc0037646.1_g000002 Rmu_sc0037647.1_g000001 Rmu_sc0037647.1_g000002 Rmu_sc0037678.1_g000001 Rmu_ssc0000072.1_g000010 Rmu_ssc0000116.1_g000041 Rmu_ssc0000127.1_g000018 Rmu_ssc0000175.1_g000018 Rmu_ssc0000175.1_g000019 Rmu_ssc0000175.1_g000020 Rmu_ssc0000197.1_g000037 Rmu_ssc0000213.1_g000051 Rmu_ssc0000359.1_g000008 Rmu_ssc0000392.1_g000019
rosa_roxburghii Rroxscaffold_154G00447930 Rroxscaffold_1G00000570 Rroxscaffold_1G00009890 Rroxscaffold_1G00012210 Rroxscaffold_1G00012960 Rroxscaffold_1G00014650 Rroxscaffold_1G00014660 Rroxscaffold_1G00014670 Rroxscaffold_1G00022880 Rroxscaffold_1G00024640 Rroxscaffold_1G00024650 Rroxscaffold_1G00025670 Rroxscaffold_1G00025680 Rroxscaffold_1G00025690 Rroxscaffold_1G00030660 Rroxscaffold_1G00031340 Rroxscaffold_1G00031350 Rroxscaffold_2G00103100 Rroxscaffold_2G00103120 Rroxscaffold_2G00107390 Rroxscaffold_2G00108940 Rroxscaffold_2G00110610 Rroxscaffold_2G00110620 Rroxscaffold_2G00110710 Rroxscaffold_2G00110720 Rroxscaffold_2G00110730 Rroxscaffold_2G00111170 Rroxscaffold_2G00111510 Rroxscaffold_2G00114750 Rroxscaffold_2G00114760 Rroxscaffold_2G00114770 Rroxscaffold_2G00116270 Rroxscaffold_2G00121090 Rroxscaffold_2G00129350 Rroxscaffold_2G00130410 Rroxscaffold_2G00155930 Rroxscaffold_3G00218120 Rroxscaffold_3G00218330 Rroxscaffold_3G00218340 Rroxscaffold_3G00227530 Rroxscaffold_3G00233140 Rroxscaffold_3G00236800 Rroxscaffold_3G00242370 Rroxscaffold_3G00242380 Rroxscaffold_3G00242410 Rroxscaffold_3G00248720 Rroxscaffold_3G00248730 Rroxscaffold_3G00248770 Rroxscaffold_3G00258550 Rroxscaffold_3G00258560 Rroxscaffold_4G00287000 Rroxscaffold_4G00289070 Rroxscaffold_4G00289080 Rroxscaffold_4G00289100 Rroxscaffold_4G00295600 Rroxscaffold_4G00298090 Rroxscaffold_4G00308330 Rroxscaffold_4G00310570 Rroxscaffold_4G00310580 Rroxscaffold_4G00310620 Rroxscaffold_4G00315750 Rroxscaffold_4G00319620 Rroxscaffold_4G00319630 Rroxscaffold_4G00328870 Rroxscaffold_4G00328880 Rroxscaffold_4G00332120 Rroxscaffold_4G00332310 Rroxscaffold_5G00332660 Rroxscaffold_5G00332710 Rroxscaffold_5G00332970 Rroxscaffold_5G00344920 Rroxscaffold_5G00345540 Rroxscaffold_5G00346760 Rroxscaffold_5G00346770 Rroxscaffold_5G00347420 Rroxscaffold_5G00350360 Rroxscaffold_5G00350370 Rroxscaffold_5G00354490 Rroxscaffold_5G00370760 Rroxscaffold_5G00370770 Rroxscaffold_5G00374010 Rroxscaffold_5G00374020 Rroxscaffold_5G00374490 Rroxscaffold_5G00374510 Rroxscaffold_5G00387640 Rroxscaffold_5G00387650 Rroxscaffold_6G00387870 Rroxscaffold_6G00388560 Rroxscaffold_6G00388570 Rroxscaffold_6G00388670 Rroxscaffold_6G00388680 Rroxscaffold_6G00391960 Rroxscaffold_6G00393010 Rroxscaffold_6G00395010 Rroxscaffold_6G00395020 Rroxscaffold_6G00397990 Rroxscaffold_6G00401460 Rroxscaffold_6G00407850 Rroxscaffold_6G00423090 Rroxscaffold_6G00423100 Rroxscaffold_6G00423110 Rroxscaffold_7G00165960 Rroxscaffold_7G00165970 Rroxscaffold_7G00176270 Rroxscaffold_7G00176280 Rroxscaffold_7G00176600 Rroxscaffold_7G00176610 Rroxscaffold_7G00176620 Rroxscaffold_7G00176660 Rroxscaffold_7G00195710
rosa_rugosa Rorug03G0209000 Rorug05G0468000 Rorug05G0468000
rosa_samantha Rh3AG250900 Rh3AG257700 Rh3BG294700 Rh3CG284700 Rh3CG284800 Rh3DG280200 Rh3DG280300 Rh3DG280500 Rh3DG287600 Rh3DG287700 Rh4BG408500 Rh4DG402700 Rh6CG194400 Rh6CG194600 Rh6DG186400 Rh6DG186500 Rh7AG218100 Rh7AG278800 Rh7BG224200 Rh7CG231300 Rh7CG231400 Rh7DG225400
rosa_wichuraiana Rw3G022640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 662
AccBSI CCGCTC 4 cut(s) 496, 784, 886, 1399
AccIII TCCGGA 1 cut(s) 490
AclWI GGATC 6 cut(s) 630, 724, 737, 819, 869, 1056
AcoI YGGCCR 2 cut(s) 817, 965
AcsI RAATTY 1 cut(s) 954
AcvI CACGTG 2 cut(s) 442, 791
AcyI GRCGYC 1 cut(s) 561
AfaI GTAC 2 cut(s) 634, 1309
AgsI TTSAA 5 cut(s) 198, 398, 575, 629, 994
AjiI CACGTC 1 cut(s) 830
AjnI CCWGG 2 cut(s) 289, 819
AloI GAACNNNNNNTCC 2 cut(s) 36, 68
AluBI AGCT 3 cut(s) 150, 796, 1009
AluI AGCT 3 cut(s) 150, 796, 1009
Alw21I GWGCWC 1 cut(s) 1407
Alw26I GTCTC 4 cut(s) 500, 912, 1279, 1377
Alw44I GTGCAC 1 cut(s) 1403
AlwI GGATC 6 cut(s) 630, 724, 737, 819, 869, 1056
Ama87I CYCGRG 2 cut(s) 47, 447
Aor13HI TCCGGA 1 cut(s) 490
ApaLI GTGCAC 1 cut(s) 1403
ApeKI GCWGC 1 cut(s) 517
ApoI RAATTY 1 cut(s) 954
AspLEI GCGC 6 cut(s) 244, 246, 1034, 1214, 1272, 1337
AspS9I GGNCC 7 cut(s) 44, 265, 451, 525, 592, 1107, 1165
AsuC2I CCSGG 2 cut(s) 222, 332
AsuHPI GGTGA 2 cut(s) 487, 653
AsuNHI GCTAGC 1 cut(s) 1286
AvaI CYCGRG 2 cut(s) 47, 447
AvaII GGWCC 4 cut(s) 44, 265, 525, 1165
BaeGI GKGCMC 2 cut(s) 441, 1407
BaeI ACNNNNGTAYC 2 cut(s) 1299, 1332
BamHI GGATCC 1 cut(s) 729
BanI GGYRCC 1 cut(s) 662
BanII GRGCYC 1 cut(s) 352
BauI CACGAG 1 cut(s) 30
BbrPI CACGTG 2 cut(s) 442, 791
Bbv12I GWGCWC 1 cut(s) 1407
BbvI GCAGC 1 cut(s) 504
BccI CCATC 9 cut(s) 199, 280, 653, 708, 851, 868, 1022, 1261, 1298
BceAI ACGGC 2 cut(s) 476, 574
BcgI CGANNNNNNTGC 6 cut(s) 428, 462, 499, 533, 1191, 1225
BciT130I CCWGG 2 cut(s) 291, 821
BclI TGATCA 1 cut(s) 1150
BcnI CCSGG 2 cut(s) 222, 332
BcoDI GTCTC 4 cut(s) 500, 912, 1279, 1377
BfaI CTAG 5 cut(s) 11, 465, 606, 1278, 1287
BisI GCNGC 4 cut(s) 518, 817, 1035, 1191
BlsI GCNGC 4 cut(s) 519, 818, 1036, 1192
Bme1390I CCNGG 4 cut(s) 222, 291, 332, 821
Bme18I GGWCC 4 cut(s) 44, 265, 525, 1165
BmeT110I CYCGRG 2 cut(s) 47, 447
BmgBI CACGTC 1 cut(s) 830
BmgT120I GGNCC 7 cut(s) 44, 265, 451, 525, 592, 1107, 1165
BmrFI CCNGG 4 cut(s) 222, 291, 332, 821
BmsI GCATC 3 cut(s) 33, 182, 191
BmtI GCTAGC 1 cut(s) 1290
BplI GAGNNNNNCTC 4 cut(s) 172, 204, 1259, 1291
BpmI CTGGAG 1 cut(s) 312
Bpu10I CCTNAGC 1 cut(s) 924
BpuMI CCSGG 2 cut(s) 222, 332
BsaAI YACGTR 2 cut(s) 442, 791
BsaBI GATNNNNATC 2 cut(s) 1053, 1241
BsaHI GRCGYC 1 cut(s) 561
BsaJI CCNNGG 5 cut(s) 48, 57, 221, 471, 521
BsaWI WCCGGW 2 cut(s) 363, 490
BsaXI ACNNNNNCTCC 4 cut(s) 472, 502, 1322, 1352
Bse118I RCCGGY 4 cut(s) 97, 120, 967, 1206
Bse3DI GCAATG 2 cut(s) 169, 1134
Bse8I GATNNNNATC 2 cut(s) 1053, 1241
BseAI TCCGGA 1 cut(s) 490
BseBI CCWGG 2 cut(s) 291, 821
BseDI CCNNGG 5 cut(s) 48, 57, 221, 471, 521
BseGI GGATG 6 cut(s) 508, 664, 879, 934, 1309, 1375
BseJI GATNNNNATC 2 cut(s) 1053, 1241
BseMI GCAATG 2 cut(s) 169, 1134
BsePI GCGCGC 1 cut(s) 242
BseRI GAGGAG 4 cut(s) 309, 434, 848, 917
BseSI GKGCMC 2 cut(s) 441, 1407
BseXI GCAGC 1 cut(s) 504
Bsh1285I CGRYCG 1 cut(s) 1225
BshNI GGYRCC 1 cut(s) 662
BsiEI CGRYCG 1 cut(s) 1225
BsiHKAI GWGCWC 1 cut(s) 1407
BsiHKCI CYCGRG 2 cut(s) 47, 447
BsiSI CCGG 8 cut(s) 98, 121, 221, 332, 364, 491, 968, 1207
BslFI GGGAC 4 cut(s) 57, 238, 511, 840
BsmAI GTCTC 4 cut(s) 500, 912, 1279, 1377
BsmBI CGTCTC 3 cut(s) 500, 1279, 1377
BsmFI GGGAC 4 cut(s) 57, 238, 511, 840
BsmI GAATGC 1 cut(s) 727
BsoBI CYCGRG 2 cut(s) 47, 447
Bsp1286I GDGCHC 3 cut(s) 352, 441, 1407
Bsp13I TCCGGA 1 cut(s) 490
Bsp143I GATC 9 cut(s) 622, 706, 729, 745, 811, 861, 1048, 1150, 1196
Bsp68I TCGCGA 2 cut(s) 866, 1296
BspEI TCCGGA 1 cut(s) 490
BspOI GCTAGC 1 cut(s) 1290
BspPI GGATC 6 cut(s) 630, 724, 737, 819, 869, 1056
BspT107I GGYRCC 1 cut(s) 662
BsrBI CCGCTC 4 cut(s) 496, 784, 886, 1399
BsrDI GCAATG 2 cut(s) 169, 1134
BsrFI RCCGGY 4 cut(s) 97, 120, 967, 1206
BssAI RCCGGY 4 cut(s) 97, 120, 967, 1206
BssECI CCNNGG 5 cut(s) 48, 57, 221, 471, 521
BssHII GCGCGC 1 cut(s) 242
BssMI GATC 9 cut(s) 622, 706, 729, 745, 811, 861, 1048, 1150, 1196
BssNI GRCGYC 1 cut(s) 561
BssSI CACGAG 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 57
Bst2BI CACGAG 1 cut(s) 30
Bst2UI CCWGG 2 cut(s) 291, 821
Bst4CI ACNGT 8 cut(s) 229, 251, 589, 980, 1130, 1223, 1393, 1409
BstACI GRCGYC 1 cut(s) 561
BstAPI GCANNNNNTGC 1 cut(s) 305
BstBAI YACGTR 2 cut(s) 442, 791
BstC8I GCNNGC 9 cut(s) 122, 244, 301, 426, 430, 846, 969, 1179, 1288
BstDEI CTNAG 3 cut(s) 739, 924, 1425
BstF5I GGATG 6 cut(s) 508, 664, 879, 934, 1309, 1375
BstHHI GCGC 6 cut(s) 244, 246, 1034, 1214, 1272, 1337
BstKTI GATC 9 cut(s) 625, 709, 732, 748, 814, 864, 1051, 1153, 1199
BstMAI GTCTC 4 cut(s) 500, 912, 1279, 1377
BstMBI GATC 9 cut(s) 622, 706, 729, 745, 811, 861, 1048, 1150, 1196
BstMCI CGRYCG 1 cut(s) 1225
BstMWI GCNNNNNNNGC 5 cut(s) 103, 305, 1187, 1278, 1287
BstNI CCWGG 2 cut(s) 291, 821
BstNSI RCATGY 1 cut(s) 1001
BstSCI CCNGG 4 cut(s) 220, 289, 330, 819
BstSLI GKGCMC 2 cut(s) 441, 1407
BstV1I GCAGC 1 cut(s) 504
BstX2I RGATCY 2 cut(s) 622, 729
BstXI CCANNNNNNTGG 1 cut(s) 589
BstYI RGATCY 2 cut(s) 622, 729
BtrI CACGTC 1 cut(s) 830
BtsCI GGATG 6 cut(s) 508, 664, 879, 934, 1309, 1375
BtsIMutI CAGTG 2 cut(s) 234, 1398
BtuMI TCGCGA 2 cut(s) 866, 1296
Cac8I GCNNGC 9 cut(s) 122, 244, 301, 426, 430, 846, 969, 1179, 1288
CfoI GCGC 6 cut(s) 244, 246, 1034, 1214, 1272, 1337
Cfr10I RCCGGY 4 cut(s) 97, 120, 967, 1206
Cfr13I GGNCC 7 cut(s) 44, 265, 451, 525, 592, 1107, 1165
CseI GACGC 3 cut(s) 550, 1261, 1394
Csp6I GTAC 2 cut(s) 633, 1308
CspCI CAANNNNNGTGG 2 cut(s) 1026, 1061
CviAII CATG 5 cut(s) 676, 716, 998, 1283, 1313
CviQI GTAC 2 cut(s) 633, 1308
DdeI CTNAG 3 cut(s) 739, 924, 1425
DpnI GATC 9 cut(s) 624, 708, 731, 747, 813, 863, 1050, 1152, 1198
DpnII GATC 9 cut(s) 622, 706, 729, 745, 811, 861, 1048, 1150, 1196
EaeI YGGCCR 2 cut(s) 817, 965
Eco130I CCWWGG 1 cut(s) 57
Eco147I AGGCCT 3 cut(s) 303, 319, 1094
Eco24I GRGCYC 1 cut(s) 352
Eco47I GGWCC 4 cut(s) 44, 265, 525, 1165
Eco72I CACGTG 2 cut(s) 442, 791
Eco88I CYCGRG 2 cut(s) 47, 447
EcoO109I RGGNCCY 4 cut(s) 44, 265, 525, 1107
EcoRII CCWGG 2 cut(s) 289, 819
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 57
Esp3I CGTCTC 3 cut(s) 500, 1279, 1377
FaeI CATG 5 cut(s) 679, 719, 1001, 1286, 1316
FaiI YATR 9 cut(s) 144, 285, 338, 677, 717, 999, 1175, 1284, 1314
FalI AAGNNNNNCTT 2 cut(s) 1082, 1114
FaqI GGGAC 4 cut(s) 57, 238, 511, 840
FatI CATG 5 cut(s) 675, 715, 997, 1282, 1312
FauI CCCGC 8 cut(s) 148, 421, 489, 817, 837, 909, 1223, 1392
FbaI TGATCA 1 cut(s) 1150
Fnu4HI GCNGC 4 cut(s) 518, 817, 1035, 1191
FokI GGATG 6 cut(s) 515, 671, 886, 941, 1316, 1382
FriOI GRGCYC 1 cut(s) 352
Fsp4HI GCNGC 4 cut(s) 518, 817, 1035, 1191
FspBI CTAG 5 cut(s) 11, 465, 606, 1278, 1287
GlaI GCGC 6 cut(s) 243, 245, 1033, 1213, 1271, 1336
GluI GCNGC 4 cut(s) 518, 817, 1035, 1191
GsuI CTGGAG 1 cut(s) 312
HapII CCGG 8 cut(s) 98, 121, 221, 332, 364, 491, 968, 1207
HgaI GACGC 3 cut(s) 550, 1261, 1394
HhaI GCGC 6 cut(s) 244, 246, 1034, 1214, 1272, 1337
Hin1I GRCGYC 1 cut(s) 561
Hin1II CATG 5 cut(s) 679, 719, 1001, 1286, 1316
Hin6I GCGC 6 cut(s) 242, 244, 1032, 1212, 1270, 1335
HinP1I GCGC 6 cut(s) 242, 244, 1032, 1212, 1270, 1335
HincII GTYRAC 1 cut(s) 1003
HindII GTYRAC 1 cut(s) 1003
HindIII AAGCTT 1 cut(s) 1007
HinfI GANTC 4 cut(s) 511, 905, 949, 1120
HpaII CCGG 8 cut(s) 98, 121, 221, 332, 364, 491, 968, 1207
HphI GGTGA 2 cut(s) 487, 653
Hpy166II GTNNAC 3 cut(s) 1003, 1318, 1405
Hpy188I TCNGA 2 cut(s) 912, 960
Hpy8I GTNNAC 3 cut(s) 1003, 1318, 1405
Hpy99I CGWCG 2 cut(s) 216, 566
HpyAV CCTTC 5 cut(s) 210, 428, 864, 1105, 1408
HpyCH4III ACNGT 8 cut(s) 229, 251, 589, 980, 1130, 1223, 1393, 1409
HpyCH4IV ACGT 4 cut(s) 441, 631, 790, 829
HpyCH4V TGCA 6 cut(s) 343, 691, 1114, 1177, 1357, 1405
HpyF10VI GCNNNNNNNGC 5 cut(s) 103, 305, 1187, 1278, 1287
HpyF3I CTNAG 3 cut(s) 739, 924, 1425
HpySE526I ACGT 4 cut(s) 441, 631, 790, 829
Hsp92I GRCGYC 1 cut(s) 561
Hsp92II CATG 5 cut(s) 679, 719, 1001, 1286, 1316
HspAI GCGC 6 cut(s) 242, 244, 1032, 1212, 1270, 1335
KflI GGGWCCC 1 cut(s) 44
Kpn2I TCCGGA 1 cut(s) 490
KroI GCCGGC 2 cut(s) 120, 967
KroNI GCCGGC 2 cut(s) 122, 969
Ksp22I TGATCA 1 cut(s) 1150
Kzo9I GATC 9 cut(s) 622, 706, 729, 745, 811, 861, 1048, 1150, 1196
LmnI GCTCC 9 cut(s) 159, 292, 296, 355, 421, 493, 781, 883, 1396
Lsp1109I GCAGC 1 cut(s) 504
LweI GCATC 3 cut(s) 33, 182, 191
MaeI CTAG 5 cut(s) 11, 465, 606, 1278, 1287
MaeII ACGT 4 cut(s) 441, 631, 790, 829
MaeIII GTNAC 5 cut(s) 475, 786, 888, 974, 1217
MalI GATC 9 cut(s) 624, 708, 731, 747, 813, 863, 1050, 1152, 1198
MbiI CCGCTC 4 cut(s) 496, 784, 886, 1399
MboI GATC 9 cut(s) 622, 706, 729, 745, 811, 861, 1048, 1150, 1196
MboII GAAGA 2 cut(s) 186, 1049
MfeI CAATTG 1 cut(s) 694
MflI RGATCY 2 cut(s) 622, 729
MhlI GDGCHC 3 cut(s) 352, 441, 1407
MluCI AATT 4 cut(s) 694, 878, 954, 1069
MlyI GAGTC 3 cut(s) 520, 914, 958
MmeI TCCRAC 4 cut(s) 60, 293, 1124, 1354
MroI TCCGGA 1 cut(s) 490
MroNI GCCGGC 2 cut(s) 120, 967
MseI TTAA 2 cut(s) 185, 767
MslI CAYNNNNRTG 1 cut(s) 720
MspI CCGG 8 cut(s) 98, 121, 221, 332, 364, 491, 968, 1207
MspR9I CCNGG 4 cut(s) 222, 291, 332, 821
MunI CAATTG 1 cut(s) 694
Mva1269I GAATGC 1 cut(s) 727
MvaI CCWGG 2 cut(s) 291, 821
MwoI GCNNNNNNNGC 5 cut(s) 103, 305, 1187, 1278, 1287
NaeI GCCGGC 2 cut(s) 122, 969
NciI CCSGG 2 cut(s) 222, 332
NdeII GATC 9 cut(s) 622, 706, 729, 745, 811, 861, 1048, 1150, 1196
NgoMIV GCCGGC 2 cut(s) 120, 967
NheI GCTAGC 1 cut(s) 1286
NlaIII CATG 5 cut(s) 679, 719, 1001, 1286, 1316
NmeAIII GCCGAG 4 cut(s) 131, 496, 546, 731
NmuCI GTSAC 4 cut(s) 475, 786, 888, 1217
NruI TCGCGA 2 cut(s) 866, 1296
NspI RCATGY 1 cut(s) 1001
PauI GCGCGC 1 cut(s) 242
PceI AGGCCT 3 cut(s) 303, 319, 1094
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PctI GAATGC 1 cut(s) 727
PdiI GCCGGC 2 cut(s) 122, 969
PfeI GAWTC 1 cut(s) 1120
PflFI GACNNNGTC 1 cut(s) 560
PfoI TCCNGGA 1 cut(s) 289
PkrI GCNGC 4 cut(s) 519, 818, 1036, 1192
PleI GAGTC 3 cut(s) 519, 913, 957
PmaCI CACGTG 2 cut(s) 442, 791
PmlI CACGTG 2 cut(s) 442, 791
PpsI GAGTC 3 cut(s) 519, 913, 957
Ppu21I YACGTR 2 cut(s) 442, 791
PpuMI RGGWCCY 3 cut(s) 44, 265, 525
Psp5II RGGWCCY 3 cut(s) 44, 265, 525
Psp6I CCWGG 2 cut(s) 289, 819
PspCI CACGTG 2 cut(s) 442, 791
PspGI CCWGG 2 cut(s) 289, 819
PspPI GGNCC 7 cut(s) 44, 265, 451, 525, 592, 1107, 1165
PspPPI RGGWCCY 3 cut(s) 44, 265, 525
PsuI RGATCY 2 cut(s) 622, 729
PsyI GACNNNGTC 1 cut(s) 560
PteI GCGCGC 1 cut(s) 242
RruI TCGCGA 2 cut(s) 866, 1296
RsaI GTAC 2 cut(s) 634, 1309
RsaNI GTAC 2 cut(s) 633, 1308
RseI CAYNNNNRTG 1 cut(s) 720
SaqAI TTAA 2 cut(s) 185, 767
SatI GCNGC 4 cut(s) 518, 817, 1035, 1191
Sau3AI GATC 9 cut(s) 622, 706, 729, 745, 811, 861, 1048, 1150, 1196
Sau96I GGNCC 7 cut(s) 44, 265, 451, 525, 592, 1107, 1165
SchI GAGTC 3 cut(s) 520, 914, 958
ScrFI CCNGG 4 cut(s) 222, 291, 332, 821
SduI GDGCHC 3 cut(s) 352, 441, 1407
SfaNI GCATC 3 cut(s) 33, 182, 191
SinI GGWCC 4 cut(s) 44, 265, 525, 1165
SmiMI CAYNNNNRTG 1 cut(s) 720
Sse9I AATT 4 cut(s) 694, 878, 954, 1069
SseBI AGGCCT 3 cut(s) 303, 319, 1094
SspMI CTAG 5 cut(s) 11, 465, 606, 1278, 1287
StuI AGGCCT 3 cut(s) 303, 319, 1094
StyD4I CCNGG 4 cut(s) 220, 289, 330, 819
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 8 cut(s) 229, 251, 589, 980, 1130, 1223, 1393, 1409
TaiI ACGT 4 cut(s) 444, 634, 793, 832
TaqI TCGA 3 cut(s) 72, 211, 774
TasI AATT 4 cut(s) 694, 878, 954, 1069
TauI GCSGC 3 cut(s) 819, 1037, 1193
TfiI GAWTC 1 cut(s) 1120
Tru1I TTAA 2 cut(s) 185, 767
Tru9I TTAA 2 cut(s) 185, 767
TscAI CASTG 2 cut(s) 234, 1398
TseFI GTSAC 4 cut(s) 475, 786, 888, 1217
TseI GCWGC 1 cut(s) 517
Tsp45I GTSAC 4 cut(s) 475, 786, 888, 1217
TspGWI ACGGA 2 cut(s) 671, 1157
TspRI CASTG 2 cut(s) 234, 1398
Tth111I GACNNNGTC 1 cut(s) 560
VneI GTGCAC 1 cut(s) 1403
VpaK11BI GGWCC 4 cut(s) 44, 265, 525, 1165
XapI RAATTY 1 cut(s) 954
XceI RCATGY 1 cut(s) 1001
XcmI CCANNNNNNNNNTGG 1 cut(s) 673
XspI CTAG 5 cut(s) 11, 465, 606, 1278, 1287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.