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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 113 |
| AccII | CGCG | 1 cut(s) | 188 |
| AccIII | TCCGGA | 1 cut(s) | 153 |
| AciI | CCGC | 8 cut(s) | 7, 59, 148, 160, 188, 310, 455, 550 |
| AclWI | GGATC | 2 cut(s) | 32, 468 |
| AcvI | CACGTG | 1 cut(s) | 223 |
| AfaI | GTAC | 1 cut(s) | 249 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 97, 276, 556 |
| AgsI | TTSAA | 1 cut(s) | 230 |
| AluBI | AGCT | 2 cut(s) | 178, 295 |
| AluI | AGCT | 2 cut(s) | 178, 295 |
| Alw26I | GTCTC | 3 cut(s) | 75, 398, 532 |
| AlwI | GGATC | 2 cut(s) | 32, 468 |
| Ama87I | CYCGRG | 2 cut(s) | 273, 354 |
| Aor13HI | TCCGGA | 1 cut(s) | 153 |
| AoxI | GGCC | 3 cut(s) | 237, 505, 520 |
| ApeKI | GCWGC | 2 cut(s) | 46, 183 |
| AspLEI | GCGC | 1 cut(s) | 188 |
| AspS9I | GGNCC | 5 cut(s) | 81, 106, 151, 505, 520 |
| AsuHPI | GGTGA | 1 cut(s) | 539 |
| AsuNHI | GCTAGC | 1 cut(s) | 295 |
| AvaI | CYCGRG | 2 cut(s) | 273, 354 |
| AvaII | GGWCC | 3 cut(s) | 81, 106, 151 |
| BbrPI | CACGTG | 1 cut(s) | 223 |
| BbvI | GCAGC | 2 cut(s) | 58, 195 |
| BccI | CCATC | 4 cut(s) | 14, 31, 434, 510 |
| BceAI | ACGGC | 1 cut(s) | 462 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 516, 550 |
| BcoDI | GTCTC | 3 cut(s) | 75, 398, 532 |
| BfaI | CTAG | 2 cut(s) | 296, 360 |
| BisI | GCNGC | 3 cut(s) | 47, 184, 189 |
| BlsI | GCNGC | 3 cut(s) | 48, 185, 190 |
| Bme18I | GGWCC | 3 cut(s) | 81, 106, 151 |
| BmeT110I | CYCGRG | 2 cut(s) | 273, 354 |
| BmgT120I | GGNCC | 5 cut(s) | 81, 106, 151, 505, 520 |
| BmiI | GGNNCC | 5 cut(s) | 107, 152, 158, 207, 521 |
| BmsI | GCATC | 1 cut(s) | 297 |
| BmtI | GCTAGC | 1 cut(s) | 299 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 190, 222 |
| BpmI | CTGGAG | 1 cut(s) | 338 |
| BsaAI | YACGTR | 1 cut(s) | 223 |
| BsaBI | GATNNNNATC | 1 cut(s) | 465 |
| BsaJI | CCNNGG | 1 cut(s) | 274 |
| BsaWI | WCCGGW | 2 cut(s) | 108, 153 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 97, 276, 556 |
| Bse3DI | GCAATG | 2 cut(s) | 169, 396 |
| Bse8I | GATNNNNATC | 1 cut(s) | 465 |
| BseAI | TCCGGA | 1 cut(s) | 153 |
| BseDI | CCNNGG | 1 cut(s) | 274 |
| BseGI | GGATG | 3 cut(s) | 42, 312, 521 |
| BseJI | GATNNNNATC | 1 cut(s) | 465 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 97, 276, 556 |
| BseMI | GCAATG | 2 cut(s) | 169, 396 |
| BseRI | GAGGAG | 3 cut(s) | 80, 110, 359 |
| BseXI | GCAGC | 2 cut(s) | 58, 195 |
| Bsh1236I | CGCG | 1 cut(s) | 188 |
| Bsh1285I | CGRYCG | 2 cut(s) | 113, 117 |
| BshFI | GGCC | 3 cut(s) | 239, 507, 522 |
| BsiEI | CGRYCG | 2 cut(s) | 113, 117 |
| BsiHKCI | CYCGRG | 2 cut(s) | 273, 354 |
| BsiSI | CCGG | 2 cut(s) | 109, 154 |
| BslFI | GGGAC | 1 cut(s) | 292 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 97, 276, 556 |
| BsmAI | GTCTC | 3 cut(s) | 75, 398, 532 |
| BsmBI | CGTCTC | 1 cut(s) | 532 |
| BsmFI | GGGAC | 1 cut(s) | 292 |
| BsnI | GGCC | 3 cut(s) | 239, 507, 522 |
| BsoBI | CYCGRG | 2 cut(s) | 273, 354 |
| Bsp13I | TCCGGA | 1 cut(s) | 153 |
| Bsp143I | GATC | 3 cut(s) | 24, 217, 460 |
| BspACI | CCGC | 8 cut(s) | 7, 59, 148, 160, 188, 310, 455, 550 |
| BspANI | GGCC | 3 cut(s) | 239, 507, 522 |
| BspEI | TCCGGA | 1 cut(s) | 153 |
| BspFNI | CGCG | 1 cut(s) | 188 |
| BspLI | GGNNCC | 5 cut(s) | 107, 152, 158, 207, 521 |
| BspOI | GCTAGC | 1 cut(s) | 299 |
| BspPI | GGATC | 2 cut(s) | 32, 468 |
| BsrDI | GCAATG | 2 cut(s) | 169, 396 |
| BssECI | CCNNGG | 1 cut(s) | 274 |
| BssMI | GATC | 3 cut(s) | 24, 217, 460 |
| Bst4CI | ACNGT | 2 cut(s) | 118, 543 |
| BstBAI | YACGTR | 1 cut(s) | 223 |
| BstC8I | GCNNGC | 2 cut(s) | 9, 297 |
| BstF5I | GGATG | 3 cut(s) | 42, 312, 521 |
| BstFNI | CGCG | 1 cut(s) | 188 |
| BstHHI | GCGC | 1 cut(s) | 188 |
| BstKTI | GATC | 3 cut(s) | 27, 220, 463 |
| BstMAI | GTCTC | 3 cut(s) | 75, 398, 532 |
| BstMBI | GATC | 3 cut(s) | 24, 217, 460 |
| BstMCI | CGRYCG | 2 cut(s) | 113, 117 |
| BstNSI | RCATGY | 1 cut(s) | 395 |
| BstUI | CGCG | 1 cut(s) | 188 |
| BstV1I | GCAGC | 2 cut(s) | 58, 195 |
| BsuRI | GGCC | 3 cut(s) | 239, 507, 522 |
| BtsCI | GGATG | 3 cut(s) | 42, 312, 521 |
| Cac8I | GCNNGC | 2 cut(s) | 9, 297 |
| CfoI | GCGC | 1 cut(s) | 188 |
| Cfr13I | GGNCC | 5 cut(s) | 81, 106, 151, 505, 520 |
| CseI | GACGC | 1 cut(s) | 277 |
| Csp6I | GTAC | 1 cut(s) | 248 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 438, 473 |
| CviAII | CATG | 2 cut(s) | 392, 410 |
| CviQI | GTAC | 1 cut(s) | 248 |
| DpnI | GATC | 3 cut(s) | 26, 219, 462 |
| DpnII | GATC | 3 cut(s) | 24, 217, 460 |
| Eco47I | GGWCC | 3 cut(s) | 81, 106, 151 |
| Eco72I | CACGTG | 1 cut(s) | 223 |
| Eco88I | CYCGRG | 2 cut(s) | 273, 354 |
| EcoO109I | RGGNCCY | 1 cut(s) | 520 |
| Esp3I | CGTCTC | 1 cut(s) | 532 |
| FaeI | CATG | 2 cut(s) | 395, 413 |
| FaiI | YATR | 2 cut(s) | 393, 411 |
| FaqI | GGGAC | 1 cut(s) | 292 |
| FatI | CATG | 2 cut(s) | 391, 409 |
| FauI | CCCGC | 1 cut(s) | 141 |
| FblI | GTMKAC | 1 cut(s) | 113 |
| Fnu4HI | GCNGC | 3 cut(s) | 47, 184, 189 |
| FokI | GGATG | 3 cut(s) | 49, 319, 528 |
| Fsp4HI | GCNGC | 3 cut(s) | 47, 184, 189 |
| FspBI | CTAG | 2 cut(s) | 296, 360 |
| GlaI | GCGC | 1 cut(s) | 187 |
| GluI | GCNGC | 3 cut(s) | 47, 184, 189 |
| GsuI | CTGGAG | 1 cut(s) | 338 |
| HaeIII | GGCC | 3 cut(s) | 239, 507, 522 |
| HapII | CCGG | 2 cut(s) | 109, 154 |
| HgaI | GACGC | 1 cut(s) | 277 |
| HhaI | GCGC | 1 cut(s) | 188 |
| Hin1II | CATG | 2 cut(s) | 395, 413 |
| Hin6I | GCGC | 1 cut(s) | 186 |
| HinP1I | GCGC | 1 cut(s) | 186 |
| HincII | GTYRAC | 3 cut(s) | 114, 267, 415 |
| HindII | GTYRAC | 3 cut(s) | 114, 267, 415 |
| HinfI | GANTC | 2 cut(s) | 68, 406 |
| HpaII | CCGG | 2 cut(s) | 109, 154 |
| HphI | GGTGA | 1 cut(s) | 539 |
| Hpy166II | GTNNAC | 3 cut(s) | 114, 267, 415 |
| Hpy188I | TCNGA | 3 cut(s) | 75, 85, 515 |
| Hpy188III | TCNNGA | 4 cut(s) | 28, 154, 215, 537 |
| Hpy8I | GTNNAC | 3 cut(s) | 114, 267, 415 |
| HpyAV | CCTTC | 2 cut(s) | 27, 518 |
| HpyCH4III | ACNGT | 2 cut(s) | 118, 543 |
| HpyCH4IV | ACGT | 1 cut(s) | 222 |
| HpyCH4V | TGCA | 4 cut(s) | 46, 133, 391, 527 |
| HpySE526I | ACGT | 1 cut(s) | 222 |
| Hsp92II | CATG | 2 cut(s) | 395, 413 |
| HspAI | GCGC | 1 cut(s) | 186 |
| Kpn2I | TCCGGA | 1 cut(s) | 153 |
| Kzo9I | GATC | 3 cut(s) | 24, 217, 460 |
| LmnI | GCTCC | 4 cut(s) | 175, 211, 319, 346 |
| LpnPI | CCDG | 5 cut(s) | 105, 122, 167, 302, 538 |
| Lsp1109I | GCAGC | 2 cut(s) | 58, 195 |
| LweI | GCATC | 1 cut(s) | 297 |
| MaeI | CTAG | 2 cut(s) | 296, 360 |
| MaeII | ACGT | 1 cut(s) | 222 |
| MalI | GATC | 3 cut(s) | 26, 219, 462 |
| MboI | GATC | 3 cut(s) | 24, 217, 460 |
| MboII | GAAGA | 2 cut(s) | 461, 506 |
| MluCI | AATT | 4 cut(s) | 41, 230, 482, 532 |
| MlyI | GAGTC | 2 cut(s) | 77, 400 |
| MmeI | TCCRAC | 3 cut(s) | 120, 153, 537 |
| MnlI | CCTC | 9 cut(s) | 58, 88, 91, 138, 229, 269, 306, 321, 337 |
| MroI | TCCGGA | 1 cut(s) | 153 |
| MspA1I | CMGCKG | 1 cut(s) | 552 |
| MspI | CCGG | 2 cut(s) | 109, 154 |
| MvnI | CGCG | 1 cut(s) | 188 |
| NdeII | GATC | 3 cut(s) | 24, 217, 460 |
| NheI | GCTAGC | 1 cut(s) | 295 |
| NlaIII | CATG | 2 cut(s) | 395, 413 |
| NlaIV | GGNNCC | 5 cut(s) | 107, 152, 158, 207, 521 |
| NmeAIII | GCCGAG | 2 cut(s) | 193, 427 |
| NspI | RCATGY | 1 cut(s) | 395 |
| PkrI | GCNGC | 3 cut(s) | 48, 185, 190 |
| PleI | GAGTC | 2 cut(s) | 76, 400 |
| PmaCI | CACGTG | 1 cut(s) | 223 |
| PmlI | CACGTG | 1 cut(s) | 223 |
| PpsI | GAGTC | 2 cut(s) | 76, 400 |
| Ppu21I | YACGTR | 1 cut(s) | 223 |
| PspCI | CACGTG | 1 cut(s) | 223 |
| PspN4I | GGNNCC | 5 cut(s) | 107, 152, 158, 207, 521 |
| PspPI | GGNCC | 5 cut(s) | 81, 106, 151, 505, 520 |
| RsaI | GTAC | 1 cut(s) | 249 |
| RsaNI | GTAC | 1 cut(s) | 248 |
| SalI | GTCGAC | 1 cut(s) | 112 |
| SatI | GCNGC | 3 cut(s) | 47, 184, 189 |
| Sau3AI | GATC | 3 cut(s) | 24, 217, 460 |
| Sau96I | GGNCC | 5 cut(s) | 81, 106, 151, 505, 520 |
| SchI | GAGTC | 2 cut(s) | 77, 400 |
| SetI | ASST | 5 cut(s) | 102, 180, 225, 297, 389 |
| SfaNI | GCATC | 1 cut(s) | 297 |
| SinI | GGWCC | 3 cut(s) | 81, 106, 151 |
| Sse9I | AATT | 4 cut(s) | 41, 230, 482, 532 |
| SsiI | CCGC | 8 cut(s) | 7, 59, 148, 160, 188, 310, 455, 550 |
| SspMI | CTAG | 2 cut(s) | 296, 360 |
| TaaI | ACNGT | 2 cut(s) | 118, 543 |
| TaiI | ACGT | 1 cut(s) | 225 |
| TaqI | TCGA | 3 cut(s) | 113, 342, 536 |
| TasI | AATT | 4 cut(s) | 41, 230, 482, 532 |
| TauI | GCSGC | 1 cut(s) | 191 |
| TseI | GCWGC | 2 cut(s) | 46, 183 |
| VpaK11BI | GGWCC | 3 cut(s) | 81, 106, 151 |
| XceI | RCATGY | 1 cut(s) | 395 |
| XmiI | GTMKAC | 1 cut(s) | 113 |
| XspI | CTAG | 2 cut(s) | 296, 360 |