Rmu_sc0000538.1_g000038

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000538.1
OG0000075
Physical Location & Seq
Forward (+)
151927 .. 153773
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000538.1_g000038.1.cds

Sequence Viewer

Length: 1461 bp
atggctcgggcttcggagccaactgttgaagtggacatctccgtcgaggagttgctggaagatgtggagcagcgtcaaagcgataccaatgctcggctggtgcaagatgcagtgttggaacagctggatgctgtctttggccatgacactagcagccccatctcgcgggatgtcattactatcgatagtggagagacgaaggtaaccagccaagttgtaggcgagattgattcgacggttgaggctctggaggtgcaacaggagtctggagaaggcgcgagtggggatgcccaggttactgaggcaggggcccaaggtcaggttgccaagggagatgggatccgagtgacggatacgtgtgcccgcacagactgggtcgggtcgaagaaaatgactgtatcgcaacttcggggtctcgcgcacaccctgtgcgagattagagttactgacggtgtcatcctgcaaatggttgtcgacttacggaactgtcatttgcaccatagtcgtgcgaatgctgaagatctgcacctggggtatcgggaggctcaggtgaggctgatgagggctgtggacatgaattaccatgcctcggccgagttggtagcccactttgatcgggagatagcccgactgcagggggagctgaatgccgagagggggcaggcacgtgagcttcagagtgcattggaccaaggccaggcggagtgtaaggatatgaagcgagcagttgatgaaaggatcgcgaggctgatggagttggagagatcacttgcagtggaggaggctcgttgtcaagaggccgagggtgctatcgctctgctgaaagagtccaacttagagctgactgggaagctacaacgggcggaggatgccatgaaagcggttgatcaggttagggcccgggttagcgaggctgaagagtgcctgcaagagttggaaaggcaagtccaggatctcgatgccgagttggagcttcgcgcggctgctttagagagtttagcacattttcctgatcgcgtagtggaattggaggggcatgttggtactttgaaaagggaaattgaccgtttgcgagacgttgagctcgagtcgggcgagagggaggtggagatggagcgactgaggaagaagttagctgagcagcagactcgggctagtagctttgccgagtactgcatacgcttgcgcgctgctaccgagacacactttgacaaactccatatggctaagcgggatggcacggataaggcggtggatctctacctccggtcagatcactttcaagagaagatgaacaagggccaggttggcgatcgtgaggcagagggtgctactggcgagcggaaggcttgcatgagtatagaaggcgaggtgcgaggtgaagatgttggagagcgagatgaggcgggggagcgagaccgagtaggggagcagacacgtagtgccaagggcgaggcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

486

Amino Acids

54.02

Weight (kDa)

4.82

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000075)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0348161 RchiOBHm_Chr1g0367481 RchiOBHm_Chr1g0368431 RchiOBHm_Chr2g0116021 RchiOBHm_Chr2g0133961 RchiOBHm_Chr4g0390151 RchiOBHm_Chr4g0402771 RchiOBHm_Chr4g0419581 RchiOBHm_Chr5g0054351 RchiOBHm_Chr6g0278891 RchiOBHm_Chr7g0201941 RchiOBHm_Chr7g0242761
rosa_laevigata RLG00000002487 RLG00000002488 RLG00000003412 RLG00000003415 RLG00000013607 RLG00000018981 RLG00000018982 RLG00000034520 RLG00000034521
rosa_multiflora Rmu_co8024510.1_g000001 Rmu_co8121892.1_g000001 Rmu_co8133046.1_g000001 Rmu_co8158032.1_g000001 Rmu_co8181114.1_g000001 Rmu_co8202532.1_g000001 Rmu_co8331471.1_g000001 Rmu_co8340209.1_g000001 Rmu_co8359899.1_g000001 Rmu_co8433657.1_g000002 Rmu_co8436419.1_g000002 Rmu_co8458211.1_g000002 Rmu_co8458731.1_g000002 Rmu_co8466361.1_g000001 Rmu_co8474565.1_g000001 Rmu_co8474565.1_g000002 Rmu_co8482201.1_g000001 Rmu_co8491967.1_g000003 Rmu_co8498095.1_g000001 Rmu_co8513217.1_g000002 Rmu_co8518257.1_g000001 Rmu_co8520425.1_g000003 Rmu_co8521283.1_g000003 Rmu_sc0000029.1_g000029 Rmu_sc0000082.1_g000019 Rmu_sc0000147.1_g000107 Rmu_sc0000212.1_g000005 Rmu_sc0000247.1_g000030 Rmu_sc0000367.1_g000175 Rmu_sc0000433.1_g000035 Rmu_sc0000538.1_g000038 Rmu_sc0000550.1_g000010 Rmu_sc0000635.1_g000007 Rmu_sc0000650.1_g000012 Rmu_sc0000652.1_g000009 Rmu_sc0000652.1_g000010 Rmu_sc0000742.1_g000010 Rmu_sc0000750.1_g000007 Rmu_sc0000750.1_g000008 Rmu_sc0000772.1_g000018 Rmu_sc0000830.1_g000026 Rmu_sc0000859.1_g000006 Rmu_sc0001190.1_g000039 Rmu_sc0001190.1_g000050 Rmu_sc0001190.1_g000051 Rmu_sc0001205.1_g000008 Rmu_sc0001294.1_g000025 Rmu_sc0001366.1_g000010 Rmu_sc0001373.1_g000036 Rmu_sc0001423.1_g000046 Rmu_sc0001788.1_g000014 Rmu_sc0001801.1_g000016 Rmu_sc0001849.1_g000032 Rmu_sc0001967.1_g000002 Rmu_sc0002082.1_g000066 Rmu_sc0002250.1_g000013 Rmu_sc0002322.1_g000039 Rmu_sc0002371.1_g000002 Rmu_sc0002522.1_g000036 Rmu_sc0002532.1_g000048 Rmu_sc0002669.1_g000065 Rmu_sc0002669.1_g000067 Rmu_sc0002669.1_g000069 Rmu_sc0002834.1_g000007 Rmu_sc0003226.1_g000070 Rmu_sc0003260.1_g000018 Rmu_sc0003313.1_g000007 Rmu_sc0003441.1_g000018 Rmu_sc0003490.1_g000008 Rmu_sc0003705.1_g000011 Rmu_sc0003737.1_g000013 Rmu_sc0003748.1_g000020 Rmu_sc0003910.1_g000015 Rmu_sc0003919.1_g000029 Rmu_sc0003919.1_g000031 Rmu_sc0004037.1_g000012 Rmu_sc0004099.1_g000003 Rmu_sc0004122.1_g000013 Rmu_sc0004402.1_g000013 Rmu_sc0004646.1_g000035 Rmu_sc0004688.1_g000024 Rmu_sc0004823.1_g000046 Rmu_sc0004869.1_g000003 Rmu_sc0004869.1_g000004 Rmu_sc0005132.1_g000035 Rmu_sc0005190.1_g000001 Rmu_sc0005229.1_g000005 Rmu_sc0005229.1_g000023 Rmu_sc0005363.1_g000034 Rmu_sc0005537.1_g000006 Rmu_sc0005657.1_g000024 Rmu_sc0005856.1_g000011 Rmu_sc0005856.1_g000012 Rmu_sc0005953.1_g000007 Rmu_sc0005971.1_g000015 Rmu_sc0006287.1_g000004 Rmu_sc0006315.1_g000014 Rmu_sc0006518.1_g000003 Rmu_sc0006695.1_g000066 Rmu_sc0006803.1_g000056 Rmu_sc0006822.1_g000002 Rmu_sc0006926.1_g000011 Rmu_sc0007560.1_g000008 Rmu_sc0007582.1_g000005 Rmu_sc0007618.1_g000025 Rmu_sc0007647.1_g000004 Rmu_sc0007656.1_g000013 Rmu_sc0007877.1_g000011 Rmu_sc0008528.1_g000005 Rmu_sc0008528.1_g000006 Rmu_sc0008749.1_g000004 Rmu_sc0008989.1_g000003 Rmu_sc0009120.1_g000010 Rmu_sc0009663.1_g000009 Rmu_sc0010035.1_g000001 Rmu_sc0010160.1_g000010 Rmu_sc0010160.1_g000011 Rmu_sc0010953.1_g000004 Rmu_sc0011008.1_g000006 Rmu_sc0011452.1_g000009 Rmu_sc0012746.1_g000014 Rmu_sc0013612.1_g000017 Rmu_sc0013951.1_g000011 Rmu_sc0014162.1_g000009 Rmu_sc0014162.1_g000010 Rmu_sc0016149.1_g000003 Rmu_sc0016418.1_g000008 Rmu_sc0016418.1_g000009 Rmu_sc0017353.1_g000001 Rmu_sc0017353.1_g000002 Rmu_sc0018537.1_g000012 Rmu_sc0019739.1_g000003 Rmu_sc0019739.1_g000004 Rmu_sc0020186.1_g000016 Rmu_sc0021611.1_g000001 Rmu_sc0022755.1_g000003 Rmu_sc0024226.1_g000006 Rmu_sc0025769.1_g000004 Rmu_sc0025769.1_g000005 Rmu_sc0030235.1_g000004 Rmu_sc0035508.1_g000007 Rmu_sc0036413.1_g000001 Rmu_sc0037646.1_g000001 Rmu_sc0037646.1_g000002 Rmu_sc0037647.1_g000001 Rmu_sc0037647.1_g000002 Rmu_sc0037678.1_g000001 Rmu_ssc0000072.1_g000010 Rmu_ssc0000116.1_g000041 Rmu_ssc0000127.1_g000018 Rmu_ssc0000175.1_g000018 Rmu_ssc0000175.1_g000019 Rmu_ssc0000175.1_g000020 Rmu_ssc0000197.1_g000037 Rmu_ssc0000213.1_g000051 Rmu_ssc0000359.1_g000008 Rmu_ssc0000392.1_g000019
rosa_roxburghii Rroxscaffold_154G00447930 Rroxscaffold_1G00000570 Rroxscaffold_1G00009890 Rroxscaffold_1G00012210 Rroxscaffold_1G00012960 Rroxscaffold_1G00014650 Rroxscaffold_1G00014660 Rroxscaffold_1G00014670 Rroxscaffold_1G00022880 Rroxscaffold_1G00024640 Rroxscaffold_1G00024650 Rroxscaffold_1G00025670 Rroxscaffold_1G00025680 Rroxscaffold_1G00025690 Rroxscaffold_1G00030660 Rroxscaffold_1G00031340 Rroxscaffold_1G00031350 Rroxscaffold_2G00103100 Rroxscaffold_2G00103120 Rroxscaffold_2G00107390 Rroxscaffold_2G00108940 Rroxscaffold_2G00110610 Rroxscaffold_2G00110620 Rroxscaffold_2G00110710 Rroxscaffold_2G00110720 Rroxscaffold_2G00110730 Rroxscaffold_2G00111170 Rroxscaffold_2G00111510 Rroxscaffold_2G00114750 Rroxscaffold_2G00114760 Rroxscaffold_2G00114770 Rroxscaffold_2G00116270 Rroxscaffold_2G00121090 Rroxscaffold_2G00129350 Rroxscaffold_2G00130410 Rroxscaffold_2G00155930 Rroxscaffold_3G00218120 Rroxscaffold_3G00218330 Rroxscaffold_3G00218340 Rroxscaffold_3G00227530 Rroxscaffold_3G00233140 Rroxscaffold_3G00236800 Rroxscaffold_3G00242370 Rroxscaffold_3G00242380 Rroxscaffold_3G00242410 Rroxscaffold_3G00248720 Rroxscaffold_3G00248730 Rroxscaffold_3G00248770 Rroxscaffold_3G00258550 Rroxscaffold_3G00258560 Rroxscaffold_4G00287000 Rroxscaffold_4G00289070 Rroxscaffold_4G00289080 Rroxscaffold_4G00289100 Rroxscaffold_4G00295600 Rroxscaffold_4G00298090 Rroxscaffold_4G00308330 Rroxscaffold_4G00310570 Rroxscaffold_4G00310580 Rroxscaffold_4G00310620 Rroxscaffold_4G00315750 Rroxscaffold_4G00319620 Rroxscaffold_4G00319630 Rroxscaffold_4G00328870 Rroxscaffold_4G00328880 Rroxscaffold_4G00332120 Rroxscaffold_4G00332310 Rroxscaffold_5G00332660 Rroxscaffold_5G00332710 Rroxscaffold_5G00332970 Rroxscaffold_5G00344920 Rroxscaffold_5G00345540 Rroxscaffold_5G00346760 Rroxscaffold_5G00346770 Rroxscaffold_5G00347420 Rroxscaffold_5G00350360 Rroxscaffold_5G00350370 Rroxscaffold_5G00354490 Rroxscaffold_5G00370760 Rroxscaffold_5G00370770 Rroxscaffold_5G00374010 Rroxscaffold_5G00374020 Rroxscaffold_5G00374490 Rroxscaffold_5G00374510 Rroxscaffold_5G00387640 Rroxscaffold_5G00387650 Rroxscaffold_6G00387870 Rroxscaffold_6G00388560 Rroxscaffold_6G00388570 Rroxscaffold_6G00388670 Rroxscaffold_6G00388680 Rroxscaffold_6G00391960 Rroxscaffold_6G00393010 Rroxscaffold_6G00395010 Rroxscaffold_6G00395020 Rroxscaffold_6G00397990 Rroxscaffold_6G00401460 Rroxscaffold_6G00407850 Rroxscaffold_6G00423090 Rroxscaffold_6G00423100 Rroxscaffold_6G00423110 Rroxscaffold_7G00165960 Rroxscaffold_7G00165970 Rroxscaffold_7G00176270 Rroxscaffold_7G00176280 Rroxscaffold_7G00176600 Rroxscaffold_7G00176610 Rroxscaffold_7G00176620 Rroxscaffold_7G00176660 Rroxscaffold_7G00195710
rosa_rugosa Rorug03G0209000 Rorug05G0468000 Rorug05G0468000
rosa_samantha Rh3AG250900 Rh3AG257700 Rh3BG294700 Rh3CG284700 Rh3CG284800 Rh3DG280200 Rh3DG280300 Rh3DG280500 Rh3DG287600 Rh3DG287700 Rh4BG408500 Rh4DG402700 Rh6CG194400 Rh6CG194600 Rh6DG186400 Rh6DG186500 Rh7AG218100 Rh7AG278800 Rh7BG224200 Rh7CG231300 Rh7CG231400 Rh7DG225400
rosa_wichuraiana Rw3G022640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AccBSI CCGCTC 1 cut(s) 1342
AccI GTMKAC 1 cut(s) 474
AccII CGCG 8 cut(s) 166, 278, 419, 743, 978, 980, 1017, 1188
AclWI GGATC 5 cut(s) 334, 347, 746, 960, 1263
AcoI YGGCCR 2 cut(s) 139, 591
AcuI CTGAAG 3 cut(s) 537, 659, 936
AcvI CACGTG 1 cut(s) 668
AdeI CACNNNGTG 2 cut(s) 429, 1442
AfaI GTAC 2 cut(s) 1045, 1172
AflIII ACRYGT 2 cut(s) 356, 1436
AgsI TTSAA 3 cut(s) 29, 1051, 1283
AjnI CCWGG 5 cut(s) 291, 528, 696, 948, 1302
AluBI AGCT 9 cut(s) 124, 643, 673, 841, 853, 973, 1084, 1136, 1161
AluI AGCT 9 cut(s) 124, 643, 673, 841, 853, 973, 1084, 1136, 1161
Alw21I GWGCWC 1 cut(s) 1086
Alw26I GTCTC 5 cut(s) 188, 419, 1068, 1193, 1410
AlwI GGATC 5 cut(s) 334, 347, 746, 960, 1263
Ama87I CYCGRG 4 cut(s) 6, 900, 1085, 1149
AoxI GGCC 7 cut(s) 139, 309, 591, 694, 798, 897, 1300
ApaI GGGCCC 2 cut(s) 313, 901
ApeKI GCWGC 5 cut(s) 70, 153, 983, 1141, 1190
AspLEI GCGC 5 cut(s) 278, 421, 980, 1188, 1190
AspS9I GGNCC 6 cut(s) 309, 310, 688, 897, 898, 1300
AsuC2I CCSGG 2 cut(s) 901, 902
AsuHPI GGTGA 2 cut(s) 562, 1391
AvaI CYCGRG 4 cut(s) 6, 900, 1085, 1149
AvaII GGWCC 1 cut(s) 688
BaeGI GKGCMC 3 cut(s) 313, 364, 901
BalI TGGCCA 1 cut(s) 141
BamHI GGATCC 1 cut(s) 339
BanII GRGCYC 3 cut(s) 313, 901, 1086
BarI GAAGNNNNNNTAC 2 cut(s) 390, 422
BbrPI CACGTG 1 cut(s) 668
Bbv12I GWGCWC 1 cut(s) 1086
BbvI GCAGC 5 cut(s) 82, 165, 970, 1153, 1177
BccI CCATC 5 cut(s) 167, 329, 745, 1105, 1229
BcgI CGANNNNNNTGC 6 cut(s) 71, 105, 485, 519, 1130, 1164
BciT130I CCWGG 5 cut(s) 293, 530, 698, 950, 1304
BciVI GTATCC 1 cut(s) 346
BclI TGATCA 1 cut(s) 886
BcnI CCSGG 2 cut(s) 901, 902
BcoDI GTCTC 5 cut(s) 188, 419, 1068, 1193, 1410
BfaI CTAG 2 cut(s) 150, 1155
BfmI CTRYAG 1 cut(s) 632
BfuI GTATCC 1 cut(s) 346
BglI GCCNNNNNGGC 1 cut(s) 1308
BglII AGATCT 1 cut(s) 520
BisI GCNGC 6 cut(s) 71, 154, 981, 984, 1142, 1191
BlpI GCTNAGC 2 cut(s) 1137, 1227
BlsI GCNGC 6 cut(s) 72, 155, 982, 985, 1143, 1192
BmcAI AGTACT 1 cut(s) 1172
Bme1390I CCNGG 7 cut(s) 293, 530, 698, 901, 902, 950, 1304
Bme18I GGWCC 1 cut(s) 688
BmeT110I CYCGRG 4 cut(s) 6, 900, 1085, 1149
BmgT120I GGNCC 6 cut(s) 309, 310, 688, 897, 898, 1300
BmiI GGNNCC 5 cut(s) 18, 310, 311, 341, 899
BmrFI CCNGG 7 cut(s) 293, 530, 698, 901, 902, 950, 1304
BmrI ACTGGG 2 cut(s) 382, 855
BmsI GCATC 5 cut(s) 97, 118, 277, 859, 949
BmuI ACTGGG 2 cut(s) 382, 855
BpmI CTGGAG 2 cut(s) 269, 288
Bpu10I CCTNAGC 1 cut(s) 546
Bpu1102I GCTNAGC 2 cut(s) 1137, 1227
BpuMI CCSGG 2 cut(s) 901, 902
Bsa29I ATCGAT 1 cut(s) 183
BsaAI YACGTR 3 cut(s) 357, 668, 1439
BsaI GGTCTC 2 cut(s) 419, 1410
BsaJI CCNNGG 9 cut(s) 291, 313, 327, 529, 588, 691, 801, 900, 1446
BsaWI WCCGGW 1 cut(s) 1266
Bse1I ACTGG 3 cut(s) 377, 850, 1339
BseBI CCWGG 5 cut(s) 293, 530, 698, 950, 1304
BseCI ATCGAT 1 cut(s) 183
BseDI CCNNGG 9 cut(s) 291, 313, 327, 529, 588, 691, 801, 900, 1446
BseGI GGATG 6 cut(s) 133, 175, 292, 456, 874, 1240
BseMII CTCAG 4 cut(s) 291, 560, 1112, 1128
BseNI ACTGG 3 cut(s) 377, 850, 1339
BsePI GCGCGC 1 cut(s) 1186
BseRI GAGGAG 2 cut(s) 62, 794
BseSI GKGCMC 3 cut(s) 313, 364, 901
BseX3I CGGCCG 1 cut(s) 591
BseXI GCAGC 5 cut(s) 82, 165, 970, 1153, 1177
BsgI GTGCAG 1 cut(s) 509
Bsh1236I CGCG 8 cut(s) 166, 278, 419, 743, 978, 980, 1017, 1188
Bsh1285I CGRYCG 2 cut(s) 594, 1315
BshFI GGCC 7 cut(s) 141, 311, 593, 696, 800, 899, 1302
BshVI ATCGAT 1 cut(s) 183
BsiEI CGRYCG 2 cut(s) 594, 1315
BsiHKAI GWGCWC 1 cut(s) 1086
BsiHKCI CYCGRG 4 cut(s) 6, 900, 1085, 1149
BsiSI CCGG 2 cut(s) 901, 1267
BsmAI GTCTC 5 cut(s) 188, 419, 1068, 1193, 1410
BsmBI CGTCTC 2 cut(s) 188, 1068
BsmI GAATGC 2 cut(s) 517, 652
BsnI GGCC 7 cut(s) 141, 311, 593, 696, 800, 899, 1302
Bso31I GGTCTC 2 cut(s) 419, 1410
BsoBI CYCGRG 4 cut(s) 6, 900, 1085, 1149
Bsp120I GGGCCC 2 cut(s) 309, 897
Bsp1286I GDGCHC 4 cut(s) 313, 364, 901, 1086
Bsp1720I GCTNAGC 2 cut(s) 1137, 1227
Bsp68I TCGCGA 1 cut(s) 743
BspANI GGCC 7 cut(s) 141, 311, 593, 696, 800, 899, 1302
BspCNI CTCAG 4 cut(s) 292, 559, 1113, 1129
BspDI ATCGAT 1 cut(s) 183
BspFNI CGCG 8 cut(s) 166, 278, 419, 743, 978, 980, 1017, 1188
BspLI GGNNCC 5 cut(s) 18, 310, 311, 341, 899
BspMAI CTGCAG 1 cut(s) 636
BspPI GGATC 5 cut(s) 334, 347, 746, 960, 1263
BspTNI GGTCTC 2 cut(s) 419, 1410
BsrBI CCGCTC 1 cut(s) 1342
BsrI ACTGG 3 cut(s) 377, 850, 1339
BssECI CCNNGG 9 cut(s) 291, 313, 327, 529, 588, 691, 801, 900, 1446
BssHII GCGCGC 1 cut(s) 1186
BssT1I CCWWGG 4 cut(s) 313, 327, 691, 1446
Bst2UI CCWGG 5 cut(s) 293, 530, 698, 950, 1304
Bst4CI ACNGT 6 cut(s) 25, 238, 397, 452, 488, 1067
Bst6I CTCTTC 1 cut(s) 912
BstAPI GCANNNNNTGC 1 cut(s) 1328
BstBAI YACGTR 3 cut(s) 357, 668, 1439
BstC8I GCNNGC 8 cut(s) 364, 663, 723, 926, 1184, 1188, 1340, 1351
BstDEI CTNAG 7 cut(s) 300, 546, 835, 1121, 1137, 1227, 1458
BstEII GGTNACC 1 cut(s) 202
BstF5I GGATG 6 cut(s) 133, 175, 292, 456, 874, 1240
BstFNI CGCG 8 cut(s) 166, 278, 419, 743, 978, 980, 1017, 1188
BstHHI GCGC 5 cut(s) 278, 421, 980, 1188, 1190
BstMAI GTCTC 5 cut(s) 188, 419, 1068, 1193, 1410
BstMCI CGRYCG 2 cut(s) 594, 1315
BstMWI GCNNNNNNNGC 6 cut(s) 640, 806, 869, 878, 1308, 1328
BstNI CCWGG 5 cut(s) 293, 530, 698, 950, 1304
BstNSI RCATGY 1 cut(s) 1040
BstPI GGTNACC 1 cut(s) 202
BstSCI CCNGG 7 cut(s) 291, 528, 696, 899, 900, 948, 1302
BstSFI CTRYAG 1 cut(s) 632
BstSLI GKGCMC 3 cut(s) 313, 364, 901
BstUI CGCG 8 cut(s) 166, 278, 419, 743, 978, 980, 1017, 1188
BstV1I GCAGC 5 cut(s) 82, 165, 970, 1153, 1177
BstX2I RGATCY 4 cut(s) 339, 520, 952, 1255
BstYI RGATCY 4 cut(s) 339, 520, 952, 1255
BstZI CGGCCG 1 cut(s) 591
Bsu15I ATCGAT 1 cut(s) 183
BsuI GTATCC 1 cut(s) 346
BsuRI GGCC 7 cut(s) 141, 311, 593, 696, 800, 899, 1302
BsuTUI ATCGAT 1 cut(s) 183
BtsCI GGATG 6 cut(s) 133, 175, 292, 456, 874, 1240
BtsI GCAGTG 2 cut(s) 117, 780
BtsIMutI CAGTG 2 cut(s) 117, 780
BtuMI TCGCGA 1 cut(s) 743
Cac8I GCNNGC 8 cut(s) 364, 663, 723, 926, 1184, 1188, 1340, 1351
CfoI GCGC 5 cut(s) 278, 421, 980, 1188, 1190
Cfr13I GGNCC 6 cut(s) 309, 310, 688, 897, 898, 1300
Cfr9I CCCGGG 1 cut(s) 900
ClaI ATCGAT 1 cut(s) 183
CseI GACGC 1 cut(s) 62
Csp6I GTAC 2 cut(s) 1044, 1171
CviAII CATG 6 cut(s) 143, 574, 584, 874, 1037, 1354
CviQI GTAC 2 cut(s) 1044, 1171
DdeI CTNAG 7 cut(s) 300, 546, 835, 1121, 1137, 1227, 1458
DraIII CACNNNGTG 2 cut(s) 429, 1442
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
EaeI YGGCCR 2 cut(s) 139, 591
EagI CGGCCG 1 cut(s) 591
Eam1104I CTCTTC 1 cut(s) 912
EarI CTCTTC 1 cut(s) 912
EciI GGCGGA 2 cut(s) 716, 878
Ecl136II GAGCTC 1 cut(s) 1084
EclXI CGGCCG 1 cut(s) 591
Eco130I CCWWGG 4 cut(s) 313, 327, 691, 1446
Eco24I GRGCYC 3 cut(s) 313, 901, 1086
Eco31I GGTCTC 2 cut(s) 419, 1410
Eco47I GGWCC 1 cut(s) 688
Eco52I CGGCCG 1 cut(s) 591
Eco53kI GAGCTC 1 cut(s) 1084
Eco57I CTGAAG 3 cut(s) 537, 659, 936
Eco72I CACGTG 1 cut(s) 668
Eco88I CYCGRG 4 cut(s) 6, 900, 1085, 1149
Eco91I GGTNACC 1 cut(s) 202
EcoICRI GAGCTC 1 cut(s) 1084
EcoO109I RGGNCCY 2 cut(s) 309, 897
EcoO65I GGTNACC 1 cut(s) 202
EcoRII CCWGG 5 cut(s) 291, 528, 696, 948, 1302
EcoT14I CCWWGG 4 cut(s) 313, 327, 691, 1446
EcoT38I GRGCYC 3 cut(s) 313, 901, 1086
ErhI CCWWGG 4 cut(s) 313, 327, 691, 1446
Esp3I CGTCTC 2 cut(s) 188, 1068
FaeI CATG 6 cut(s) 146, 577, 587, 877, 1040, 1357
FatI CATG 6 cut(s) 142, 573, 583, 873, 1036, 1353
FauI CCCGC 4 cut(s) 159, 371, 1224, 1399
FauNDI CATATG 1 cut(s) 1221
FbaI TGATCA 1 cut(s) 886
FblI GTMKAC 1 cut(s) 474
Fnu4HI GCNGC 6 cut(s) 71, 154, 981, 984, 1142, 1191
FokI GGATG 6 cut(s) 140, 182, 299, 443, 881, 1247
FriOI GRGCYC 3 cut(s) 313, 901, 1086
Fsp4HI GCNGC 6 cut(s) 71, 154, 981, 984, 1142, 1191
FspBI CTAG 2 cut(s) 150, 1155
GlaI GCGC 5 cut(s) 277, 420, 979, 1187, 1189
GluI GCNGC 6 cut(s) 71, 154, 981, 984, 1142, 1191
GsuI CTGGAG 2 cut(s) 269, 288
HaeIII GGCC 7 cut(s) 141, 311, 593, 696, 800, 899, 1302
HapII CCGG 2 cut(s) 901, 1267
HgaI GACGC 1 cut(s) 62
HhaI GCGC 5 cut(s) 278, 421, 980, 1188, 1190
Hin1II CATG 6 cut(s) 146, 577, 587, 877, 1040, 1357
Hin6I GCGC 5 cut(s) 276, 419, 978, 1186, 1188
HinP1I GCGC 5 cut(s) 276, 419, 978, 1186, 1188
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HinfI GANTC 5 cut(s) 230, 263, 827, 1088, 1147
HpaII CCGG 2 cut(s) 901, 1267
HphI GGTGA 2 cut(s) 562, 1391
Hpy166II GTNNAC 3 cut(s) 34, 475, 571
Hpy188I TCNGA 4 cut(s) 16, 344, 678, 1273
Hpy8I GTNNAC 3 cut(s) 34, 475, 571
Hpy99I CGWCG 2 cut(s) 47, 238
HpyAV CCTTC 4 cut(s) 193, 266, 1339, 1358
HpyCH4III ACNGT 6 cut(s) 25, 238, 397, 452, 488, 1067
HpyCH4IV ACGT 4 cut(s) 356, 667, 1077, 1438
HpyF10VI GCNNNNNNNGC 6 cut(s) 640, 806, 869, 878, 1308, 1328
HpyF3I CTNAG 7 cut(s) 300, 546, 835, 1121, 1137, 1227, 1458
HpySE526I ACGT 4 cut(s) 356, 667, 1077, 1438
Hsp92II CATG 6 cut(s) 146, 577, 587, 877, 1040, 1357
HspAI GCGC 5 cut(s) 276, 419, 978, 1186, 1188
Ksp22I TGATCA 1 cut(s) 886
LmnI GCTCC 7 cut(s) 16, 67, 640, 970, 1114, 1411, 1429
Lsp1109I GCAGC 5 cut(s) 82, 165, 970, 1153, 1177
LweI GCATC 5 cut(s) 97, 118, 277, 859, 949
MaeI CTAG 2 cut(s) 150, 1155
MaeII ACGT 4 cut(s) 356, 667, 1077, 1438
MaeIII GTNAC 4 cut(s) 202, 295, 346, 442
MbiI CCGCTC 1 cut(s) 1342
MboII GAAGA 7 cut(s) 71, 397, 530, 929, 1138, 1300, 1394
MflI RGATCY 4 cut(s) 339, 520, 952, 1255
MhlI GDGCHC 4 cut(s) 313, 364, 901, 1086
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 3 cut(s) 577, 1025, 1059
MluNI TGGCCA 1 cut(s) 141
MlyI GAGTC 4 cut(s) 272, 836, 1097, 1141
MmeI TCCRAC 6 cut(s) 96, 738, 855, 915, 948, 1369
Mox20I TGGCCA 1 cut(s) 141
MscI TGGCCA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 504
Msp20I TGGCCA 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 2 cut(s) 901, 1267
MspR9I CCNGG 7 cut(s) 293, 530, 698, 901, 902, 950, 1304
Mva1269I GAATGC 2 cut(s) 517, 652
MvaI CCWGG 5 cut(s) 293, 530, 698, 950, 1304
MvnI CGCG 8 cut(s) 166, 278, 419, 743, 978, 980, 1017, 1188
MwoI GCNNNNNNNGC 6 cut(s) 640, 806, 869, 878, 1308, 1328
NciI CCSGG 2 cut(s) 901, 902
NdeI CATATG 1 cut(s) 1221
NlaIII CATG 6 cut(s) 146, 577, 587, 877, 1040, 1357
NlaIV GGNNCC 5 cut(s) 18, 310, 311, 341, 899
NmeAIII GCCGAG 7 cut(s) 73, 569, 619, 676, 826, 988, 1192
NmuCI GTSAC 1 cut(s) 346
NruI TCGCGA 1 cut(s) 743
NspI RCATGY 1 cut(s) 1040
PaeR7I CTCGAG 1 cut(s) 1085
PauI GCGCGC 1 cut(s) 1186
PcsI WCGNNNNNNNCGW 2 cut(s) 1083, 1092
PctI GAATGC 2 cut(s) 517, 652
PfeI GAWTC 1 cut(s) 230
PflFI GACNNNGTC 2 cut(s) 374, 452
PfoI TCCNGGA 1 cut(s) 948
PkrI GCNGC 6 cut(s) 72, 155, 982, 985, 1143, 1192
Ple19I CGATCG 1 cut(s) 1315
PleI GAGTC 4 cut(s) 271, 835, 1096, 1141
PmaCI CACGTG 1 cut(s) 668
PmlI CACGTG 1 cut(s) 668
PpsI GAGTC 4 cut(s) 271, 835, 1096, 1141
Ppu21I YACGTR 3 cut(s) 357, 668, 1439
Psp124BI GAGCTC 1 cut(s) 1086
Psp6I CCWGG 5 cut(s) 291, 528, 696, 948, 1302
PspCI CACGTG 1 cut(s) 668
PspEI GGTNACC 1 cut(s) 202
PspGI CCWGG 5 cut(s) 291, 528, 696, 948, 1302
PspN4I GGNNCC 5 cut(s) 18, 310, 311, 341, 899
PspOMI GGGCCC 2 cut(s) 309, 897
PspPI GGNCC 6 cut(s) 309, 310, 688, 897, 898, 1300
PspXI VCTCGAGB 1 cut(s) 1085
PstI CTGCAG 1 cut(s) 636
PsuI RGATCY 4 cut(s) 339, 520, 952, 1255
PsyI GACNNNGTC 2 cut(s) 374, 452
PteI GCGCGC 1 cut(s) 1186
PvuI CGATCG 1 cut(s) 1315
PvuII CAGCTG 1 cut(s) 124
RruI TCGCGA 1 cut(s) 743
RsaI GTAC 2 cut(s) 1045, 1172
RsaNI GTAC 2 cut(s) 1044, 1171
RseI CAYNNNNRTG 1 cut(s) 504
SacI GAGCTC 1 cut(s) 1086
SalI GTCGAC 1 cut(s) 473
SatI GCNGC 6 cut(s) 71, 154, 981, 984, 1142, 1191
Sau96I GGNCC 6 cut(s) 309, 310, 688, 897, 898, 1300
ScaI AGTACT 1 cut(s) 1172
SchI GAGTC 4 cut(s) 272, 836, 1097, 1141
ScrFI CCNGG 7 cut(s) 293, 530, 698, 901, 902, 950, 1304
SduI GDGCHC 4 cut(s) 313, 364, 901, 1086
SfaNI GCATC 5 cut(s) 97, 118, 277, 859, 949
SfcI CTRYAG 1 cut(s) 632
Sfr274I CTCGAG 1 cut(s) 1085
SinI GGWCC 1 cut(s) 688
SlaI CTCGAG 1 cut(s) 1085
SmaI CCCGGG 1 cut(s) 902
SmiMI CAYNNNNRTG 1 cut(s) 504
SmlI CTYRAG 1 cut(s) 1085
SmoI CTYRAG 1 cut(s) 1085
Sse9I AATT 3 cut(s) 577, 1025, 1059
SspMI CTAG 2 cut(s) 150, 1155
SstI GAGCTC 1 cut(s) 1086
StyD4I CCNGG 7 cut(s) 291, 528, 696, 899, 900, 948, 1302
StyI CCWWGG 4 cut(s) 313, 327, 691, 1446
TaaI ACNGT 6 cut(s) 25, 238, 397, 452, 488, 1067
TaiI ACGT 4 cut(s) 359, 670, 1080, 1441
TaqI TCGA 7 cut(s) 45, 183, 233, 383, 474, 957, 1086
TaqII GACCGA 1 cut(s) 1434
TasI AATT 3 cut(s) 577, 1025, 1059
TatI WGTACW 1 cut(s) 1170
TauI GCSGC 1 cut(s) 983
TfiI GAWTC 1 cut(s) 230
TscAI CASTG 2 cut(s) 117, 780
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 5 cut(s) 70, 153, 983, 1141, 1190
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 5 cut(s) 590, 731, 747, 890, 1307
TspGWI ACGGA 4 cut(s) 31, 365, 496, 1256
TspMI CCCGGG 1 cut(s) 900
TspRI CASTG 2 cut(s) 117, 780
Tth111I GACNNNGTC 2 cut(s) 374, 452
VpaK11BI GGWCC 1 cut(s) 688
XceI RCATGY 1 cut(s) 1040
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XhoI CTCGAG 1 cut(s) 1085
XmaI CCCGGG 1 cut(s) 900
XmiI GTMKAC 1 cut(s) 474
XspI CTAG 2 cut(s) 150, 1155
ZrmI AGTACT 1 cut(s) 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.