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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 183 |
| AciI | CCGC | 4 cut(s) | 5, 81, 183, 211 |
| AclWI | GGATC | 1 cut(s) | 4 |
| AcyI | GRCGYC | 1 cut(s) | 77 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 26, 42, 146 |
| AluBI | AGCT | 3 cut(s) | 88, 162, 247 |
| AluI | AGCT | 3 cut(s) | 88, 162, 247 |
| Alw21I | GWGCWC | 2 cut(s) | 90, 164 |
| Alw26I | GTCTC | 1 cut(s) | 266 |
| AlwI | GGATC | 1 cut(s) | 4 |
| Ama87I | CYCGRG | 3 cut(s) | 14, 35, 118 |
| AoxI | GGCC | 3 cut(s) | 17, 137, 152 |
| ApaI | GGGCCC | 1 cut(s) | 156 |
| AspS9I | GGNCC | 3 cut(s) | 17, 152, 153 |
| AsuC2I | CCSGG | 2 cut(s) | 36, 37 |
| AvaI | CYCGRG | 3 cut(s) | 14, 35, 118 |
| BaeGI | GKGCMC | 1 cut(s) | 156 |
| BanII | GRGCYC | 3 cut(s) | 90, 156, 164 |
| Bbv12I | GWGCWC | 2 cut(s) | 90, 164 |
| BccI | CCATC | 1 cut(s) | 235 |
| BciVI | GTATCC | 1 cut(s) | 24 |
| BcnI | CCSGG | 2 cut(s) | 36, 37 |
| BcoDI | GTCTC | 1 cut(s) | 266 |
| BfaI | CTAG | 1 cut(s) | 248 |
| BfuI | GTATCC | 1 cut(s) | 24 |
| BisI | GCNGC | 1 cut(s) | 5 |
| BlsI | GCNGC | 1 cut(s) | 6 |
| Bme1390I | CCNGG | 2 cut(s) | 36, 37 |
| BmeT110I | CYCGRG | 3 cut(s) | 14, 35, 118 |
| BmgT120I | GGNCC | 3 cut(s) | 17, 152, 153 |
| BmiI | GGNNCC | 1 cut(s) | 154 |
| BmrFI | CCNGG | 2 cut(s) | 36, 37 |
| BpuMI | CCSGG | 2 cut(s) | 36, 37 |
| Bsa29I | ATCGAT | 1 cut(s) | 219 |
| BsaHI | GRCGYC | 1 cut(s) | 77 |
| BsaJI | CCNNGG | 4 cut(s) | 13, 35, 36, 165 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 26, 42, 146 |
| BseCI | ATCGAT | 1 cut(s) | 219 |
| BseDI | CCNNGG | 4 cut(s) | 13, 35, 36, 165 |
| BseGI | GGATG | 1 cut(s) | 246 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 26, 42, 146 |
| BseSI | GKGCMC | 1 cut(s) | 156 |
| Bsh1236I | CGCG | 1 cut(s) | 183 |
| Bsh1285I | CGRYCG | 2 cut(s) | 196, 219 |
| BshFI | GGCC | 3 cut(s) | 19, 139, 154 |
| BshVI | ATCGAT | 1 cut(s) | 219 |
| BsiEI | CGRYCG | 2 cut(s) | 196, 219 |
| BsiHKAI | GWGCWC | 2 cut(s) | 90, 164 |
| BsiHKCI | CYCGRG | 3 cut(s) | 14, 35, 118 |
| BsiSI | CCGG | 1 cut(s) | 36 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 26, 42, 146 |
| BsmAI | GTCTC | 1 cut(s) | 266 |
| BsnI | GGCC | 3 cut(s) | 19, 139, 154 |
| BsoBI | CYCGRG | 3 cut(s) | 14, 35, 118 |
| Bsp120I | GGGCCC | 1 cut(s) | 152 |
| Bsp1286I | GDGCHC | 3 cut(s) | 90, 156, 164 |
| Bsp143I | GATC | 4 cut(s) | 9, 178, 193, 216 |
| BspACI | CCGC | 4 cut(s) | 5, 81, 183, 211 |
| BspANI | GGCC | 3 cut(s) | 19, 139, 154 |
| BspDI | ATCGAT | 1 cut(s) | 219 |
| BspFNI | CGCG | 1 cut(s) | 183 |
| BspLI | GGNNCC | 1 cut(s) | 154 |
| BspPI | GGATC | 1 cut(s) | 4 |
| BssECI | CCNNGG | 4 cut(s) | 13, 35, 36, 165 |
| BssMI | GATC | 4 cut(s) | 9, 178, 193, 216 |
| BssNI | GRCGYC | 1 cut(s) | 77 |
| Bst4CI | ACNGT | 1 cut(s) | 255 |
| Bst6I | CTCTTC | 1 cut(s) | 264 |
| BstACI | GRCGYC | 1 cut(s) | 77 |
| BstC8I | GCNNGC | 1 cut(s) | 213 |
| BstF5I | GGATG | 1 cut(s) | 246 |
| BstFNI | CGCG | 1 cut(s) | 183 |
| BstKTI | GATC | 4 cut(s) | 12, 181, 196, 219 |
| BstMAI | GTCTC | 1 cut(s) | 266 |
| BstMBI | GATC | 4 cut(s) | 9, 178, 193, 216 |
| BstMCI | CGRYCG | 2 cut(s) | 196, 219 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 94 |
| BstSCI | CCNGG | 2 cut(s) | 34, 35 |
| BstSLI | GKGCMC | 1 cut(s) | 156 |
| BstUI | CGCG | 1 cut(s) | 183 |
| Bsu15I | ATCGAT | 1 cut(s) | 219 |
| BsuI | GTATCC | 1 cut(s) | 24 |
| BsuRI | GGCC | 3 cut(s) | 19, 139, 154 |
| BsuTUI | ATCGAT | 1 cut(s) | 219 |
| BtsCI | GGATG | 1 cut(s) | 246 |
| Cac8I | GCNNGC | 1 cut(s) | 213 |
| Cfr13I | GGNCC | 3 cut(s) | 17, 152, 153 |
| Cfr9I | CCCGGG | 1 cut(s) | 35 |
| ClaI | ATCGAT | 1 cut(s) | 219 |
| CseI | GACGC | 1 cut(s) | 66 |
| CviJI | RGCY | 7 cut(s) | 19, 56, 88, 139, 154, 162, 247 |
| CviKI_1 | RGCY | 7 cut(s) | 19, 56, 88, 139, 154, 162, 247 |
| DpnI | GATC | 4 cut(s) | 11, 180, 195, 218 |
| DpnII | GATC | 4 cut(s) | 9, 178, 193, 216 |
| Eam1104I | CTCTTC | 1 cut(s) | 264 |
| EarI | CTCTTC | 1 cut(s) | 264 |
| EciI | GGCGGA | 1 cut(s) | 70 |
| Ecl136II | GAGCTC | 2 cut(s) | 88, 162 |
| Eco24I | GRGCYC | 3 cut(s) | 90, 156, 164 |
| Eco53kI | GAGCTC | 2 cut(s) | 88, 162 |
| Eco88I | CYCGRG | 3 cut(s) | 14, 35, 118 |
| EcoICRI | GAGCTC | 2 cut(s) | 88, 162 |
| EcoO109I | RGGNCCY | 1 cut(s) | 152 |
| EcoT38I | GRGCYC | 3 cut(s) | 90, 156, 164 |
| FaiI | YATR | 2 cut(s) | 59, 65 |
| FauI | CCCGC | 1 cut(s) | 204 |
| Fnu4HI | GCNGC | 1 cut(s) | 5 |
| FokI | GGATG | 1 cut(s) | 253 |
| FriOI | GRGCYC | 3 cut(s) | 90, 156, 164 |
| Fsp4HI | GCNGC | 1 cut(s) | 5 |
| FspBI | CTAG | 1 cut(s) | 248 |
| GluI | GCNGC | 1 cut(s) | 5 |
| HaeIII | GGCC | 3 cut(s) | 19, 139, 154 |
| HapII | CCGG | 1 cut(s) | 36 |
| HgaI | GACGC | 1 cut(s) | 66 |
| Hin1I | GRCGYC | 1 cut(s) | 77 |
| HinfI | GANTC | 1 cut(s) | 274 |
| HpaII | CCGG | 1 cut(s) | 36 |
| Hpy188I | TCNGA | 1 cut(s) | 166 |
| Hpy188III | TCNNGA | 3 cut(s) | 28, 197, 262 |
| HpyAV | CCTTC | 3 cut(s) | 218, 231, 268 |
| HpyCH4III | ACNGT | 1 cut(s) | 255 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 94 |
| Hsp92I | GRCGYC | 1 cut(s) | 77 |
| Kzo9I | GATC | 4 cut(s) | 9, 178, 193, 216 |
| LmnI | GCTCC | 3 cut(s) | 94, 167, 244 |
| LpnPI | CCDG | 2 cut(s) | 49, 59 |
| MaeI | CTAG | 1 cut(s) | 248 |
| MalI | GATC | 4 cut(s) | 11, 180, 195, 218 |
| MboI | GATC | 4 cut(s) | 9, 178, 193, 216 |
| MboII | GAAGA | 2 cut(s) | 212, 281 |
| MhlI | GDGCHC | 3 cut(s) | 90, 156, 164 |
| MluCI | AATT | 1 cut(s) | 67 |
| MlyI | GAGTC | 1 cut(s) | 268 |
| MmeI | TCCRAC | 1 cut(s) | 113 |
| MnlI | CCTC | 8 cut(s) | 23, 36, 45, 129, 137, 143, 160, 201 |
| MspA1I | CMGCKG | 1 cut(s) | 7 |
| MspI | CCGG | 1 cut(s) | 36 |
| MspR9I | CCNGG | 2 cut(s) | 36, 37 |
| MvnI | CGCG | 1 cut(s) | 183 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 94 |
| NciI | CCSGG | 2 cut(s) | 36, 37 |
| NdeII | GATC | 4 cut(s) | 9, 178, 193, 216 |
| NlaIV | GGNNCC | 1 cut(s) | 154 |
| NmeAIII | GCCGAG | 2 cut(s) | 109, 165 |
| PkrI | GCNGC | 1 cut(s) | 6 |
| Ple19I | CGATCG | 2 cut(s) | 196, 219 |
| PleI | GAGTC | 1 cut(s) | 268 |
| PpsI | GAGTC | 1 cut(s) | 268 |
| Psp124BI | GAGCTC | 2 cut(s) | 90, 164 |
| PspN4I | GGNNCC | 1 cut(s) | 154 |
| PspOMI | GGGCCC | 1 cut(s) | 152 |
| PspPI | GGNCC | 3 cut(s) | 17, 152, 153 |
| PvuI | CGATCG | 2 cut(s) | 196, 219 |
| SacI | GAGCTC | 2 cut(s) | 90, 164 |
| SatI | GCNGC | 1 cut(s) | 5 |
| Sau3AI | GATC | 4 cut(s) | 9, 178, 193, 216 |
| Sau96I | GGNCC | 3 cut(s) | 17, 152, 153 |
| SchI | GAGTC | 1 cut(s) | 268 |
| ScrFI | CCNGG | 2 cut(s) | 36, 37 |
| SduI | GDGCHC | 3 cut(s) | 90, 156, 164 |
| SetI | ASST | 6 cut(s) | 47, 90, 148, 164, 192, 249 |
| SmaI | CCCGGG | 1 cut(s) | 37 |
| Sse9I | AATT | 1 cut(s) | 67 |
| SsiI | CCGC | 4 cut(s) | 5, 81, 183, 211 |
| SspMI | CTAG | 1 cut(s) | 248 |
| SstI | GAGCTC | 2 cut(s) | 90, 164 |
| StyD4I | CCNGG | 2 cut(s) | 34, 35 |
| TaaI | ACNGT | 1 cut(s) | 255 |
| TaqI | TCGA | 2 cut(s) | 192, 219 |
| TasI | AATT | 1 cut(s) | 67 |
| TauI | GCSGC | 1 cut(s) | 7 |
| TspDTI | ATGAA | 3 cut(s) | 74, 80, 237 |
| TspMI | CCCGGG | 1 cut(s) | 35 |
| XmaI | CCCGGG | 1 cut(s) | 35 |
| XspI | CTAG | 1 cut(s) | 248 |