Rroxscaffold_5G00332660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000075
Physical Location & Seq
Forward (+)
15717 .. 18929
3213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00332660.1

Sequence Viewer

Length: 1059 bp
ATGGCGCCCGAGAACTGCAGTCGCGGTAAGCGAGAGGGTTCCTCTAGTGGAGGGGAGGGAACCTCCCGTGGTGGCGTCGGTGCTTCCCTTGGAGGTGGAGAGGGTGCTTCTCGCAATCTCGGGGAGGTGGTTCCCGTGGGGCCCCGAGGGTGGTTACCGGGGAGTTGGCTAAGGCGTCTCCGAGTAGGTAGTGGGGGAGCTCCTCGCGGGAGTATAGTGGGAAGTTACCGAGGAAGTGGCCAAGGTTCGTCTCGGGAGTTCCGGGTAGGGTTGAGCAACCCGTGGTGCCCGATATACTTGACGAAGATGATTTCGAGGGCGCGCGGCCGTGCCGTTATCGAGGACTTGCCGTCGAACATCTATGCTCGCCGCCGGGGGAGGCCGTGCTTAGTAAGCGGCCGATGGCGTAACGGATATGGTGCACCCGGCTCCGAGCCCTGTTCCAACCCATCCAGGCCTCGGGTTGAGAATGTGTCGCGCTTGAGATCTATGAGTGGGGGCTCGCGGGGTTCTTGCGATGAGGTTGCTGTGGGTCTCGCGCGTACCCTAGGCGAGATTGGAATTACTAACGGCGCCATCCTTCATATGGAGTTGGCCGAGCAACGTGCTCGGTCGAGTAACTTTGCCGAGGAGTGCATTCGCTTGAGCGCTGCTGCCGAGACGCATTGGGACAAGCTCGCTAAGGCTAGGCGAGATGGTGCGGATAAGGCGGTGGATCTCTATCTCCGATCGACCCATTTTCAAGAGAAGATGAACAAAGCCTTCTCGGATGAGGCCTCGCACTTGATTCGAGATGGTATCGCTGCCGGCTGGATTGACCAGGAGAAAATGGTGCGGGATATGCAAGCTAAGAAGGCAGCAAGATCGCAAGCTAGTGCTGCAAGTGGTGGTCGAGGTACCGGGATTGTGATCCGGGAGCAAAGTGAGCGTGTGTCGTGTCAAACCGGCAATTACGAGGCGGAAGGTGCTACTAGCGAGCAGGGGGCCGTGGCCAAGATGGTAAGGTGTATGGTGAAAATGTTGGGGAACAAGACGGGGTGGAGGAGCGAGGTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

352

Amino Acids

37.61

Weight (kDa)

9.99

Isoelectric Point (pI)

55.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000075)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0348161 RchiOBHm_Chr1g0367481 RchiOBHm_Chr1g0368431 RchiOBHm_Chr2g0116021 RchiOBHm_Chr2g0133961 RchiOBHm_Chr4g0390151 RchiOBHm_Chr4g0402771 RchiOBHm_Chr4g0419581 RchiOBHm_Chr5g0054351 RchiOBHm_Chr6g0278891 RchiOBHm_Chr7g0201941 RchiOBHm_Chr7g0242761
rosa_laevigata RLG00000002487 RLG00000002488 RLG00000003412 RLG00000003415 RLG00000013607 RLG00000018981 RLG00000018982 RLG00000034520 RLG00000034521
rosa_multiflora Rmu_co8024510.1_g000001 Rmu_co8121892.1_g000001 Rmu_co8133046.1_g000001 Rmu_co8158032.1_g000001 Rmu_co8181114.1_g000001 Rmu_co8202532.1_g000001 Rmu_co8331471.1_g000001 Rmu_co8340209.1_g000001 Rmu_co8359899.1_g000001 Rmu_co8433657.1_g000002 Rmu_co8436419.1_g000002 Rmu_co8458211.1_g000002 Rmu_co8458731.1_g000002 Rmu_co8466361.1_g000001 Rmu_co8474565.1_g000001 Rmu_co8474565.1_g000002 Rmu_co8482201.1_g000001 Rmu_co8491967.1_g000003 Rmu_co8498095.1_g000001 Rmu_co8513217.1_g000002 Rmu_co8518257.1_g000001 Rmu_co8520425.1_g000003 Rmu_co8521283.1_g000003 Rmu_sc0000029.1_g000029 Rmu_sc0000082.1_g000019 Rmu_sc0000147.1_g000107 Rmu_sc0000212.1_g000005 Rmu_sc0000247.1_g000030 Rmu_sc0000367.1_g000175 Rmu_sc0000433.1_g000035 Rmu_sc0000538.1_g000038 Rmu_sc0000550.1_g000010 Rmu_sc0000635.1_g000007 Rmu_sc0000650.1_g000012 Rmu_sc0000652.1_g000009 Rmu_sc0000652.1_g000010 Rmu_sc0000742.1_g000010 Rmu_sc0000750.1_g000007 Rmu_sc0000750.1_g000008 Rmu_sc0000772.1_g000018 Rmu_sc0000830.1_g000026 Rmu_sc0000859.1_g000006 Rmu_sc0001190.1_g000039 Rmu_sc0001190.1_g000050 Rmu_sc0001190.1_g000051 Rmu_sc0001205.1_g000008 Rmu_sc0001294.1_g000025 Rmu_sc0001366.1_g000010 Rmu_sc0001373.1_g000036 Rmu_sc0001423.1_g000046 Rmu_sc0001788.1_g000014 Rmu_sc0001801.1_g000016 Rmu_sc0001849.1_g000032 Rmu_sc0001967.1_g000002 Rmu_sc0002082.1_g000066 Rmu_sc0002250.1_g000013 Rmu_sc0002322.1_g000039 Rmu_sc0002371.1_g000002 Rmu_sc0002522.1_g000036 Rmu_sc0002532.1_g000048 Rmu_sc0002669.1_g000065 Rmu_sc0002669.1_g000067 Rmu_sc0002669.1_g000069 Rmu_sc0002834.1_g000007 Rmu_sc0003226.1_g000070 Rmu_sc0003260.1_g000018 Rmu_sc0003313.1_g000007 Rmu_sc0003441.1_g000018 Rmu_sc0003490.1_g000008 Rmu_sc0003705.1_g000011 Rmu_sc0003737.1_g000013 Rmu_sc0003748.1_g000020 Rmu_sc0003910.1_g000015 Rmu_sc0003919.1_g000029 Rmu_sc0003919.1_g000031 Rmu_sc0004037.1_g000012 Rmu_sc0004099.1_g000003 Rmu_sc0004122.1_g000013 Rmu_sc0004402.1_g000013 Rmu_sc0004646.1_g000035 Rmu_sc0004688.1_g000024 Rmu_sc0004823.1_g000046 Rmu_sc0004869.1_g000003 Rmu_sc0004869.1_g000004 Rmu_sc0005132.1_g000035 Rmu_sc0005190.1_g000001 Rmu_sc0005229.1_g000005 Rmu_sc0005229.1_g000023 Rmu_sc0005363.1_g000034 Rmu_sc0005537.1_g000006 Rmu_sc0005657.1_g000024 Rmu_sc0005856.1_g000011 Rmu_sc0005856.1_g000012 Rmu_sc0005953.1_g000007 Rmu_sc0005971.1_g000015 Rmu_sc0006287.1_g000004 Rmu_sc0006315.1_g000014 Rmu_sc0006518.1_g000003 Rmu_sc0006695.1_g000066 Rmu_sc0006803.1_g000056 Rmu_sc0006822.1_g000002 Rmu_sc0006926.1_g000011 Rmu_sc0007560.1_g000008 Rmu_sc0007582.1_g000005 Rmu_sc0007618.1_g000025 Rmu_sc0007647.1_g000004 Rmu_sc0007656.1_g000013 Rmu_sc0007877.1_g000011 Rmu_sc0008528.1_g000005 Rmu_sc0008528.1_g000006 Rmu_sc0008749.1_g000004 Rmu_sc0008989.1_g000003 Rmu_sc0009120.1_g000010 Rmu_sc0009663.1_g000009 Rmu_sc0010035.1_g000001 Rmu_sc0010160.1_g000010 Rmu_sc0010160.1_g000011 Rmu_sc0010953.1_g000004 Rmu_sc0011008.1_g000006 Rmu_sc0011452.1_g000009 Rmu_sc0012746.1_g000014 Rmu_sc0013612.1_g000017 Rmu_sc0013951.1_g000011 Rmu_sc0014162.1_g000009 Rmu_sc0014162.1_g000010 Rmu_sc0016149.1_g000003 Rmu_sc0016418.1_g000008 Rmu_sc0016418.1_g000009 Rmu_sc0017353.1_g000001 Rmu_sc0017353.1_g000002 Rmu_sc0018537.1_g000012 Rmu_sc0019739.1_g000003 Rmu_sc0019739.1_g000004 Rmu_sc0020186.1_g000016 Rmu_sc0021611.1_g000001 Rmu_sc0022755.1_g000003 Rmu_sc0024226.1_g000006 Rmu_sc0025769.1_g000004 Rmu_sc0025769.1_g000005 Rmu_sc0030235.1_g000004 Rmu_sc0035508.1_g000007 Rmu_sc0036413.1_g000001 Rmu_sc0037646.1_g000001 Rmu_sc0037646.1_g000002 Rmu_sc0037647.1_g000001 Rmu_sc0037647.1_g000002 Rmu_sc0037678.1_g000001 Rmu_ssc0000072.1_g000010 Rmu_ssc0000116.1_g000041 Rmu_ssc0000127.1_g000018 Rmu_ssc0000175.1_g000018 Rmu_ssc0000175.1_g000019 Rmu_ssc0000175.1_g000020 Rmu_ssc0000197.1_g000037 Rmu_ssc0000213.1_g000051 Rmu_ssc0000359.1_g000008 Rmu_ssc0000392.1_g000019
rosa_roxburghii Rroxscaffold_154G00447930 Rroxscaffold_1G00000570 Rroxscaffold_1G00009890 Rroxscaffold_1G00012210 Rroxscaffold_1G00012960 Rroxscaffold_1G00014650 Rroxscaffold_1G00014660 Rroxscaffold_1G00014670 Rroxscaffold_1G00022880 Rroxscaffold_1G00024640 Rroxscaffold_1G00024650 Rroxscaffold_1G00025670 Rroxscaffold_1G00025680 Rroxscaffold_1G00025690 Rroxscaffold_1G00030660 Rroxscaffold_1G00031340 Rroxscaffold_1G00031350 Rroxscaffold_2G00103100 Rroxscaffold_2G00103120 Rroxscaffold_2G00107390 Rroxscaffold_2G00108940 Rroxscaffold_2G00110610 Rroxscaffold_2G00110620 Rroxscaffold_2G00110710 Rroxscaffold_2G00110720 Rroxscaffold_2G00110730 Rroxscaffold_2G00111170 Rroxscaffold_2G00111510 Rroxscaffold_2G00114750 Rroxscaffold_2G00114760 Rroxscaffold_2G00114770 Rroxscaffold_2G00116270 Rroxscaffold_2G00121090 Rroxscaffold_2G00129350 Rroxscaffold_2G00130410 Rroxscaffold_2G00155930 Rroxscaffold_3G00218120 Rroxscaffold_3G00218330 Rroxscaffold_3G00218340 Rroxscaffold_3G00227530 Rroxscaffold_3G00233140 Rroxscaffold_3G00236800 Rroxscaffold_3G00242370 Rroxscaffold_3G00242380 Rroxscaffold_3G00242410 Rroxscaffold_3G00248720 Rroxscaffold_3G00248730 Rroxscaffold_3G00248770 Rroxscaffold_3G00258550 Rroxscaffold_3G00258560 Rroxscaffold_4G00287000 Rroxscaffold_4G00289070 Rroxscaffold_4G00289080 Rroxscaffold_4G00289100 Rroxscaffold_4G00295600 Rroxscaffold_4G00298090 Rroxscaffold_4G00308330 Rroxscaffold_4G00310570 Rroxscaffold_4G00310580 Rroxscaffold_4G00310620 Rroxscaffold_4G00315750 Rroxscaffold_4G00319620 Rroxscaffold_4G00319630 Rroxscaffold_4G00328870 Rroxscaffold_4G00328880 Rroxscaffold_4G00332120 Rroxscaffold_4G00332310 Rroxscaffold_5G00332660 Rroxscaffold_5G00332710 Rroxscaffold_5G00332970 Rroxscaffold_5G00344920 Rroxscaffold_5G00345540 Rroxscaffold_5G00346760 Rroxscaffold_5G00346770 Rroxscaffold_5G00347420 Rroxscaffold_5G00350360 Rroxscaffold_5G00350370 Rroxscaffold_5G00354490 Rroxscaffold_5G00370760 Rroxscaffold_5G00370770 Rroxscaffold_5G00374010 Rroxscaffold_5G00374020 Rroxscaffold_5G00374490 Rroxscaffold_5G00374510 Rroxscaffold_5G00387640 Rroxscaffold_5G00387650 Rroxscaffold_6G00387870 Rroxscaffold_6G00388560 Rroxscaffold_6G00388570 Rroxscaffold_6G00388670 Rroxscaffold_6G00388680 Rroxscaffold_6G00391960 Rroxscaffold_6G00393010 Rroxscaffold_6G00395010 Rroxscaffold_6G00395020 Rroxscaffold_6G00397990 Rroxscaffold_6G00401460 Rroxscaffold_6G00407850 Rroxscaffold_6G00423090 Rroxscaffold_6G00423100 Rroxscaffold_6G00423110 Rroxscaffold_7G00165960 Rroxscaffold_7G00165970 Rroxscaffold_7G00176270 Rroxscaffold_7G00176280 Rroxscaffold_7G00176600 Rroxscaffold_7G00176610 Rroxscaffold_7G00176620 Rroxscaffold_7G00176660 Rroxscaffold_7G00195710
rosa_rugosa Rorug03G0209000 Rorug05G0468000 Rorug05G0468000
rosa_samantha Rh3AG250900 Rh3AG257700 Rh3BG294700 Rh3CG284700 Rh3CG284800 Rh3DG280200 Rh3DG280300 Rh3DG280500 Rh3DG287600 Rh3DG287700 Rh4BG408500 Rh4DG402700 Rh6CG194400 Rh6CG194600 Rh6DG186400 Rh6DG186500 Rh7AG218100 Rh7AG278800 Rh7BG224200 Rh7CG231300 Rh7CG231400 Rh7DG225400
rosa_wichuraiana Rw3G022640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 896
AccB1I GGYRCC 4 cut(s) 4, 285, 572, 896
AccII CGCG 8 cut(s) 24, 207, 322, 324, 478, 505, 539, 541
AclWI GGATC 2 cut(s) 723, 904
AcoI YGGCCR 5 cut(s) 238, 325, 397, 594, 990
AcyI GRCGYC 4 cut(s) 5, 75, 175, 573
AfaI GTAC 2 cut(s) 544, 898
AfeI AGCGCT 1 cut(s) 649
AfiI CCNNNNNNNGG 3 cut(s) 150, 459, 586
AgsI TTSAA 1 cut(s) 743
AhdI GACNNNNNGTC 1 cut(s) 349
AjnI CCWGG 2 cut(s) 452, 819
AluBI AGCT 4 cut(s) 200, 676, 848, 872
AluI AGCT 4 cut(s) 200, 676, 848, 872
Alw21I GWGCWC 3 cut(s) 202, 424, 610
Alw26I GTCTC 4 cut(s) 182, 255, 539, 653
Alw44I GTGCAC 1 cut(s) 420
AlwI GGATC 2 cut(s) 723, 904
Ama87I CYCGRG 5 cut(s) 8, 119, 144, 252, 459
Aor51HI AGCGCT 1 cut(s) 649
ApaI GGGCCC 1 cut(s) 144
ApaLI GTGCAC 1 cut(s) 420
ApeKI GCWGC 5 cut(s) 650, 653, 803, 857, 878
Asp718I GGTACC 1 cut(s) 896
AspA2I CCTAGG 1 cut(s) 547
AspLEI GCGC 7 cut(s) 7, 322, 324, 480, 541, 575, 650
AspS9I GGNCC 3 cut(s) 140, 141, 984
AsuC2I CCSGG 6 cut(s) 159, 263, 374, 426, 901, 914
AsuHPI GGTGA 1 cut(s) 1024
AvaI CYCGRG 5 cut(s) 8, 119, 144, 252, 459
AvrII CCTAGG 1 cut(s) 547
BaeGI GKGCMC 3 cut(s) 144, 290, 424
BalI TGGCCA 2 cut(s) 240, 992
BanI GGYRCC 4 cut(s) 4, 285, 572, 896
BanII GRGCYC 4 cut(s) 144, 202, 438, 503
Bbv12I GWGCWC 3 cut(s) 202, 424, 610
BbvI GCAGC 5 cut(s) 637, 640, 790, 865, 869
BccI CCATC 6 cut(s) 396, 457, 584, 689, 788, 991
BceAI ACGGC 6 cut(s) 312, 317, 334, 367, 586, 971
BciT130I CCWGG 2 cut(s) 454, 821
BcnI CCSGG 6 cut(s) 159, 263, 374, 426, 901, 914
BcoDI GTCTC 4 cut(s) 182, 255, 539, 653
BfaI CTAG 5 cut(s) 45, 548, 687, 873, 972
BfmI CTRYAG 1 cut(s) 16
BfoI RGCGCY 3 cut(s) 8, 576, 651
BglII AGATCT 1 cut(s) 485
BisI GCNGC 8 cut(s) 325, 370, 397, 651, 654, 804, 858, 879
BlnI CCTAGG 1 cut(s) 547
BlsI GCNGC 8 cut(s) 326, 371, 398, 652, 655, 805, 859, 880
Bme1390I CCNGG 8 cut(s) 159, 263, 374, 426, 454, 821, 901, 914
BmeRI GACNNNNNGTC 1 cut(s) 349
BmeT110I CYCGRG 5 cut(s) 8, 119, 144, 252, 459
BmgT120I GGNCC 3 cut(s) 140, 141, 984
BmrFI CCNGG 8 cut(s) 159, 263, 374, 426, 454, 821, 901, 914
BplI GAGNNNNNCTC 4 cut(s) 26, 58, 47, 79
Bpu10I CCTNAGC 2 cut(s) 170, 681
BpuEI CTTGAG 2 cut(s) 502, 664
BpuMI CCSGG 6 cut(s) 159, 263, 374, 426, 901, 914
BsaBI GATNNNNATC 2 cut(s) 720, 908
BsaHI GRCGYC 4 cut(s) 5, 75, 175, 573
BsaI GGTCTC 1 cut(s) 539
Bsc4I CCNNNNNNNGG 3 cut(s) 150, 459, 586
Bse118I RCCGGY 2 cut(s) 806, 944
Bse8I GATNNNNATC 2 cut(s) 720, 908
BseBI CCWGG 2 cut(s) 454, 821
BseGI GGATG 3 cut(s) 449, 576, 775
BseJI GATNNNNATC 2 cut(s) 720, 908
BseLI CCNNNNNNNGG 3 cut(s) 150, 459, 586
BsePI GCGCGC 1 cut(s) 320
BseRI GAGGAG 3 cut(s) 192, 644, 1057
BseSI GKGCMC 3 cut(s) 144, 290, 424
BseX3I CGGCCG 2 cut(s) 325, 397
BseXI GCAGC 5 cut(s) 637, 640, 790, 865, 869
Bsh1236I CGCG 8 cut(s) 24, 207, 322, 324, 478, 505, 539, 541
Bsh1285I CGRYCG 4 cut(s) 328, 400, 614, 731
BshNI GGYRCC 4 cut(s) 4, 285, 572, 896
BsiEI CGRYCG 4 cut(s) 328, 400, 614, 731
BsiHKAI GWGCWC 3 cut(s) 202, 424, 610
BsiHKCI CYCGRG 5 cut(s) 8, 119, 144, 252, 459
BsiSI CCGG 8 cut(s) 158, 262, 373, 426, 807, 900, 913, 945
BslFI GGGAC 1 cut(s) 683
BslI CCNNNNNNNGG 3 cut(s) 150, 459, 586
BsmAI GTCTC 4 cut(s) 182, 255, 539, 653
BsmBI CGTCTC 3 cut(s) 182, 255, 653
BsmFI GGGAC 1 cut(s) 683
BsmI GAATGC 1 cut(s) 636
Bso31I GGTCTC 1 cut(s) 539
BsoBI CYCGRG 5 cut(s) 8, 119, 144, 252, 459
Bsp120I GGGCCC 1 cut(s) 140
Bsp1286I GDGCHC 7 cut(s) 144, 202, 290, 424, 438, 503, 610
Bsp143I GATC 5 cut(s) 485, 715, 728, 863, 909
BspFNI CGCG 8 cut(s) 24, 207, 322, 324, 478, 505, 539, 541
BspMAI CTGCAG 1 cut(s) 20
BspPI GGATC 2 cut(s) 723, 904
BspT107I GGYRCC 4 cut(s) 4, 285, 572, 896
BspTNI GGTCTC 1 cut(s) 539
BsrFI RCCGGY 2 cut(s) 806, 944
BssAI RCCGGY 2 cut(s) 806, 944
BssHII GCGCGC 1 cut(s) 320
BssMI GATC 5 cut(s) 485, 715, 728, 863, 909
BssNI GRCGYC 4 cut(s) 5, 75, 175, 573
BssT1I CCWWGG 3 cut(s) 88, 241, 547
Bst2UI CCWGG 2 cut(s) 454, 821
BstACI GRCGYC 4 cut(s) 5, 75, 175, 573
BstC8I GCNNGC 8 cut(s) 322, 367, 503, 678, 808, 846, 870, 977
BstDEI CTNAG 4 cut(s) 170, 388, 681, 849
BstDSI CCRYGG 4 cut(s) 67, 135, 281, 987
BstEII GGTNACC 1 cut(s) 153
BstF5I GGATG 3 cut(s) 449, 576, 775
BstFNI CGCG 8 cut(s) 24, 207, 322, 324, 478, 505, 539, 541
BstH2I RGCGCY 3 cut(s) 8, 576, 651
BstHHI GCGC 7 cut(s) 7, 322, 324, 480, 541, 575, 650
BstKTI GATC 5 cut(s) 488, 718, 731, 866, 912
BstMAI GTCTC 4 cut(s) 182, 255, 539, 653
BstMBI GATC 5 cut(s) 485, 715, 728, 863, 909
BstMCI CGRYCG 4 cut(s) 328, 400, 614, 731
BstMWI GCNNNNNNNGC 7 cut(s) 393, 707, 841, 854, 878, 925, 965
BstNI CCWGG 2 cut(s) 454, 821
BstPI GGTNACC 1 cut(s) 153
BstSCI CCNGG 8 cut(s) 157, 261, 372, 424, 452, 819, 899, 912
BstSFI CTRYAG 1 cut(s) 16
BstSLI GKGCMC 3 cut(s) 144, 290, 424
BstUI CGCG 8 cut(s) 24, 207, 322, 324, 478, 505, 539, 541
BstV1I GCAGC 5 cut(s) 637, 640, 790, 865, 869
BstX2I RGATCY 2 cut(s) 485, 715
BstYI RGATCY 2 cut(s) 485, 715
BstZI CGGCCG 2 cut(s) 325, 397
BtgI CCRYGG 4 cut(s) 67, 135, 281, 987
BtgZI GCGATG 1 cut(s) 531
BtsCI GGATG 3 cut(s) 449, 576, 775
Cac8I GCNNGC 8 cut(s) 322, 367, 503, 678, 808, 846, 870, 977
CfoI GCGC 7 cut(s) 7, 322, 324, 480, 541, 575, 650
Cfr10I RCCGGY 2 cut(s) 806, 944
Cfr13I GGNCC 3 cut(s) 140, 141, 984
CseI GACGC 3 cut(s) 64, 164, 670
Csp6I GTAC 2 cut(s) 543, 897
CviQI GTAC 2 cut(s) 543, 897
DdeI CTNAG 4 cut(s) 170, 388, 681, 849
DinI GGCGCC 2 cut(s) 6, 574
DpnI GATC 5 cut(s) 487, 717, 730, 865, 911
DpnII GATC 5 cut(s) 485, 715, 728, 863, 909
DriI GACNNNNNGTC 1 cut(s) 349
EaeI YGGCCR 5 cut(s) 238, 325, 397, 594, 990
EagI CGGCCG 2 cut(s) 325, 397
Eam1105I GACNNNNNGTC 1 cut(s) 349
EciI GGCGGA 1 cut(s) 974
Ecl136II GAGCTC 1 cut(s) 200
EclXI CGGCCG 2 cut(s) 325, 397
Eco130I CCWWGG 3 cut(s) 88, 241, 547
Eco147I AGGCCT 2 cut(s) 457, 776
Eco24I GRGCYC 4 cut(s) 144, 202, 438, 503
Eco31I GGTCTC 1 cut(s) 539
Eco47III AGCGCT 1 cut(s) 649
Eco52I CGGCCG 2 cut(s) 325, 397
Eco53kI GAGCTC 1 cut(s) 200
Eco88I CYCGRG 5 cut(s) 8, 119, 144, 252, 459
Eco91I GGTNACC 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 200
EcoO109I RGGNCCY 2 cut(s) 140, 141
EcoO65I GGTNACC 1 cut(s) 153
EcoRII CCWGG 2 cut(s) 452, 819
EcoT14I CCWWGG 3 cut(s) 88, 241, 547
EcoT38I GRGCYC 4 cut(s) 144, 202, 438, 503
EgeI GGCGCC 2 cut(s) 6, 574
EheI GGCGCC 2 cut(s) 6, 574
ErhI CCWWGG 3 cut(s) 88, 241, 547
Esp3I CGTCTC 3 cut(s) 182, 255, 653
FaiI YATR 9 cut(s) 215, 295, 363, 417, 491, 585, 587, 842, 1010
FaqI GGGAC 1 cut(s) 683
FauI CCCGC 3 cut(s) 200, 498, 828
FauNDI CATATG 1 cut(s) 585
Fnu4HI GCNGC 8 cut(s) 325, 370, 397, 651, 654, 804, 858, 879
FokI GGATG 3 cut(s) 436, 563, 782
FriOI GRGCYC 4 cut(s) 144, 202, 438, 503
Fsp4HI GCNGC 8 cut(s) 325, 370, 397, 651, 654, 804, 858, 879
FspBI CTAG 5 cut(s) 45, 548, 687, 873, 972
GlaI GCGC 7 cut(s) 6, 321, 323, 479, 540, 574, 649
GluI GCNGC 8 cut(s) 325, 370, 397, 651, 654, 804, 858, 879
HaeII RGCGCY 3 cut(s) 8, 576, 651
HapII CCGG 8 cut(s) 158, 262, 373, 426, 807, 900, 913, 945
HgaI GACGC 3 cut(s) 64, 164, 670
HhaI GCGC 7 cut(s) 7, 322, 324, 480, 541, 575, 650
Hin1I GRCGYC 4 cut(s) 5, 75, 175, 573
Hin6I GCGC 7 cut(s) 5, 320, 322, 478, 539, 573, 648
HinP1I GCGC 7 cut(s) 5, 320, 322, 478, 539, 573, 648
HinfI GANTC 1 cut(s) 787
HpaII CCGG 8 cut(s) 158, 262, 373, 426, 807, 900, 913, 945
HphI GGTGA 1 cut(s) 1024
Hpy166II GTNNAC 1 cut(s) 422
Hpy188I TCNGA 4 cut(s) 182, 433, 728, 769
Hpy188III TCNNGA 3 cut(s) 254, 743, 791
Hpy8I GTNNAC 1 cut(s) 422
Hpy99I CGWCG 2 cut(s) 80, 355
HpyAV CCTTC 4 cut(s) 590, 772, 847, 956
HpyCH4IV ACGT 1 cut(s) 604
HpyCH4V TGCA 5 cut(s) 18, 422, 636, 844, 881
HpyF10VI GCNNNNNNNGC 7 cut(s) 393, 707, 841, 854, 878, 925, 965
HpyF3I CTNAG 4 cut(s) 170, 388, 681, 849
HpySE526I ACGT 1 cut(s) 604
Hsp92I GRCGYC 4 cut(s) 5, 75, 175, 573
HspAI GCGC 7 cut(s) 5, 320, 322, 478, 539, 573, 648
KasI GGCGCC 2 cut(s) 4, 572
KpnI GGTACC 1 cut(s) 900
KroI GCCGGC 1 cut(s) 806
KroNI GCCGGC 1 cut(s) 808
Kzo9I GATC 5 cut(s) 485, 715, 728, 863, 909
LmnI GCTCC 5 cut(s) 197, 205, 434, 916, 1044
Lsp1109I GCAGC 5 cut(s) 637, 640, 790, 865, 869
MaeI CTAG 5 cut(s) 45, 548, 687, 873, 972
MaeII ACGT 1 cut(s) 604
MaeIII GTNAC 4 cut(s) 153, 224, 407, 617
MalI GATC 5 cut(s) 487, 717, 730, 865, 911
MboI GATC 5 cut(s) 485, 715, 728, 863, 909
MboII GAAGA 2 cut(s) 316, 760
MflI RGATCY 2 cut(s) 485, 715
MhlI GDGCHC 7 cut(s) 144, 202, 290, 424, 438, 503, 610
MlsI TGGCCA 2 cut(s) 240, 992
MluCI AATT 2 cut(s) 561, 949
MluNI TGGCCA 2 cut(s) 240, 992
Mly113I GGCGCC 2 cut(s) 5, 573
MmeI TCCRAC 1 cut(s) 468
Mox20I TGGCCA 2 cut(s) 240, 992
MroNI GCCGGC 1 cut(s) 806
MscI TGGCCA 2 cut(s) 240, 992
Msp20I TGGCCA 2 cut(s) 240, 992
MspI CCGG 8 cut(s) 158, 262, 373, 426, 807, 900, 913, 945
MspR9I CCNGG 8 cut(s) 159, 263, 374, 426, 454, 821, 901, 914
Mva1269I GAATGC 1 cut(s) 636
MvaI CCWGG 2 cut(s) 454, 821
MvnI CGCG 8 cut(s) 24, 207, 322, 324, 478, 505, 539, 541
MwoI GCNNNNNNNGC 7 cut(s) 393, 707, 841, 854, 878, 925, 965
NaeI GCCGGC 1 cut(s) 808
NarI GGCGCC 2 cut(s) 5, 573
NciI CCSGG 6 cut(s) 159, 263, 374, 426, 901, 914
NdeI CATATG 1 cut(s) 585
NdeII GATC 5 cut(s) 485, 715, 728, 863, 909
NgoMIV GCCGGC 1 cut(s) 806
NmeAIII GCCGAG 3 cut(s) 622, 652, 682
PauI GCGCGC 1 cut(s) 320
PceI AGGCCT 2 cut(s) 457, 776
PcsI WCGNNNNNNNCGW 1 cut(s) 28
PctI GAATGC 1 cut(s) 636
PdiI GCCGGC 1 cut(s) 808
PfeI GAWTC 1 cut(s) 787
PfoI TCCNGGA 1 cut(s) 912
PkrI GCNGC 8 cut(s) 326, 371, 398, 652, 655, 805, 859, 880
Ple19I CGATCG 1 cut(s) 731
PluTI GGCGCC 2 cut(s) 8, 576
Psp124BI GAGCTC 1 cut(s) 202
Psp6I CCWGG 2 cut(s) 452, 819
PspEI GGTNACC 1 cut(s) 153
PspGI CCWGG 2 cut(s) 452, 819
PspOMI GGGCCC 1 cut(s) 140
PspPI GGNCC 3 cut(s) 140, 141, 984
PstI CTGCAG 1 cut(s) 20
PsuI RGATCY 2 cut(s) 485, 715
PteI GCGCGC 1 cut(s) 320
PvuI CGATCG 1 cut(s) 731
RsaI GTAC 2 cut(s) 544, 898
RsaNI GTAC 2 cut(s) 543, 897
SacI GAGCTC 1 cut(s) 202
SatI GCNGC 8 cut(s) 325, 370, 397, 651, 654, 804, 858, 879
Sau3AI GATC 5 cut(s) 485, 715, 728, 863, 909
Sau96I GGNCC 3 cut(s) 140, 141, 984
ScrFI CCNGG 8 cut(s) 159, 263, 374, 426, 454, 821, 901, 914
SduI GDGCHC 7 cut(s) 144, 202, 290, 424, 438, 503, 610
SfcI CTRYAG 1 cut(s) 16
SfoI GGCGCC 2 cut(s) 6, 574
SmlI CTYRAG 2 cut(s) 481, 643
SmoI CTYRAG 2 cut(s) 481, 643
Sse9I AATT 2 cut(s) 561, 949
SseBI AGGCCT 2 cut(s) 457, 776
SspDI GGCGCC 2 cut(s) 4, 572
SspMI CTAG 5 cut(s) 45, 548, 687, 873, 972
SstI GAGCTC 1 cut(s) 202
StuI AGGCCT 2 cut(s) 457, 776
StyD4I CCNGG 8 cut(s) 157, 261, 372, 424, 452, 819, 899, 912
StyI CCWWGG 3 cut(s) 88, 241, 547
TaiI ACGT 1 cut(s) 607
TaqI TCGA 8 cut(s) 314, 339, 353, 614, 731, 790, 892, 1053
TaqII GACCGA 1 cut(s) 600
TasI AATT 2 cut(s) 561, 949
TauI GCSGC 3 cut(s) 327, 372, 399
TfiI GAWTC 1 cut(s) 787
TseI GCWGC 5 cut(s) 650, 653, 803, 857, 878
TspDTI ATGAA 2 cut(s) 572, 767
TspGWI ACGGA 1 cut(s) 426
VneI GTGCAC 1 cut(s) 420
XcmI CCANNNNNNNNNTGG 1 cut(s) 583
XmaJI CCTAGG 1 cut(s) 547
XspI CTAG 5 cut(s) 45, 548, 687, 873, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.