Rroxscaffold_1G00022880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000075
Physical Location & Seq
Reverse (-)
28274159 .. 28274930
772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00022880.1

Sequence Viewer

Length: 588 bp
ATGGGGTCGGGTCGAAGAAAAGGACGGCCTCGCGGCTTCATCTCGGGAGTCCCCCGAGTTGGTGTTGCTATCGACACTCGTGGTAGTAAAAGGTCTCGGATTGAGAATGTGTCGCGCTCGAGATCTATGAGTGGGGGCTCGCGGGGTTCTCGCAATGAGGTTGTCGGGGTCTCGCGCGTACCACAGGAGAGATTGGAATTGCGGCGGCGCCATCCTTCATATGGTTGCGGGCTGCGGAACTGTCATCGCTACCGCGGTCGCGAGATAGCTCAACTTCAAAGGGATTTGGAAGCCGAGAGGGAGCGTGCGAACGAGCTTCATGATGCGGTGGACCGGGGCCTAGTGGAGCACGAGGATATGAGACAAGTGATTGATGAAGGAATCGTGAGGAGGATGGAGCTGGAACGAGCATTTGCCATAGGGAGGCTCGCCACCAAGAGGCCGAGGATGCTATCGCTCCCGAGAGGAGGCGAACCTCTAACCGGGAAGCTGCAGAGGGCGGAGGATGGCACGAGGCCGTGGAGCAAGTTAGGGCTGGGTTGCCAAGGCGGAAAGGCGTTTGCAAGACTTGGAAAGGCGAGGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

21.87

Weight (kDa)

11.46

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000075)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0348161 RchiOBHm_Chr1g0367481 RchiOBHm_Chr1g0368431 RchiOBHm_Chr2g0116021 RchiOBHm_Chr2g0133961 RchiOBHm_Chr4g0390151 RchiOBHm_Chr4g0402771 RchiOBHm_Chr4g0419581 RchiOBHm_Chr5g0054351 RchiOBHm_Chr6g0278891 RchiOBHm_Chr7g0201941 RchiOBHm_Chr7g0242761
rosa_laevigata RLG00000002487 RLG00000002488 RLG00000003412 RLG00000003415 RLG00000013607 RLG00000018981 RLG00000018982 RLG00000034520 RLG00000034521
rosa_multiflora Rmu_co8024510.1_g000001 Rmu_co8121892.1_g000001 Rmu_co8133046.1_g000001 Rmu_co8158032.1_g000001 Rmu_co8181114.1_g000001 Rmu_co8202532.1_g000001 Rmu_co8331471.1_g000001 Rmu_co8340209.1_g000001 Rmu_co8359899.1_g000001 Rmu_co8433657.1_g000002 Rmu_co8436419.1_g000002 Rmu_co8458211.1_g000002 Rmu_co8458731.1_g000002 Rmu_co8466361.1_g000001 Rmu_co8474565.1_g000001 Rmu_co8474565.1_g000002 Rmu_co8482201.1_g000001 Rmu_co8491967.1_g000003 Rmu_co8498095.1_g000001 Rmu_co8513217.1_g000002 Rmu_co8518257.1_g000001 Rmu_co8520425.1_g000003 Rmu_co8521283.1_g000003 Rmu_sc0000029.1_g000029 Rmu_sc0000082.1_g000019 Rmu_sc0000147.1_g000107 Rmu_sc0000212.1_g000005 Rmu_sc0000247.1_g000030 Rmu_sc0000367.1_g000175 Rmu_sc0000433.1_g000035 Rmu_sc0000538.1_g000038 Rmu_sc0000550.1_g000010 Rmu_sc0000635.1_g000007 Rmu_sc0000650.1_g000012 Rmu_sc0000652.1_g000009 Rmu_sc0000652.1_g000010 Rmu_sc0000742.1_g000010 Rmu_sc0000750.1_g000007 Rmu_sc0000750.1_g000008 Rmu_sc0000772.1_g000018 Rmu_sc0000830.1_g000026 Rmu_sc0000859.1_g000006 Rmu_sc0001190.1_g000039 Rmu_sc0001190.1_g000050 Rmu_sc0001190.1_g000051 Rmu_sc0001205.1_g000008 Rmu_sc0001294.1_g000025 Rmu_sc0001366.1_g000010 Rmu_sc0001373.1_g000036 Rmu_sc0001423.1_g000046 Rmu_sc0001788.1_g000014 Rmu_sc0001801.1_g000016 Rmu_sc0001849.1_g000032 Rmu_sc0001967.1_g000002 Rmu_sc0002082.1_g000066 Rmu_sc0002250.1_g000013 Rmu_sc0002322.1_g000039 Rmu_sc0002371.1_g000002 Rmu_sc0002522.1_g000036 Rmu_sc0002532.1_g000048 Rmu_sc0002669.1_g000065 Rmu_sc0002669.1_g000067 Rmu_sc0002669.1_g000069 Rmu_sc0002834.1_g000007 Rmu_sc0003226.1_g000070 Rmu_sc0003260.1_g000018 Rmu_sc0003313.1_g000007 Rmu_sc0003441.1_g000018 Rmu_sc0003490.1_g000008 Rmu_sc0003705.1_g000011 Rmu_sc0003737.1_g000013 Rmu_sc0003748.1_g000020 Rmu_sc0003910.1_g000015 Rmu_sc0003919.1_g000029 Rmu_sc0003919.1_g000031 Rmu_sc0004037.1_g000012 Rmu_sc0004099.1_g000003 Rmu_sc0004122.1_g000013 Rmu_sc0004402.1_g000013 Rmu_sc0004646.1_g000035 Rmu_sc0004688.1_g000024 Rmu_sc0004823.1_g000046 Rmu_sc0004869.1_g000003 Rmu_sc0004869.1_g000004 Rmu_sc0005132.1_g000035 Rmu_sc0005190.1_g000001 Rmu_sc0005229.1_g000005 Rmu_sc0005229.1_g000023 Rmu_sc0005363.1_g000034 Rmu_sc0005537.1_g000006 Rmu_sc0005657.1_g000024 Rmu_sc0005856.1_g000011 Rmu_sc0005856.1_g000012 Rmu_sc0005953.1_g000007 Rmu_sc0005971.1_g000015 Rmu_sc0006287.1_g000004 Rmu_sc0006315.1_g000014 Rmu_sc0006518.1_g000003 Rmu_sc0006695.1_g000066 Rmu_sc0006803.1_g000056 Rmu_sc0006822.1_g000002 Rmu_sc0006926.1_g000011 Rmu_sc0007560.1_g000008 Rmu_sc0007582.1_g000005 Rmu_sc0007618.1_g000025 Rmu_sc0007647.1_g000004 Rmu_sc0007656.1_g000013 Rmu_sc0007877.1_g000011 Rmu_sc0008528.1_g000005 Rmu_sc0008528.1_g000006 Rmu_sc0008749.1_g000004 Rmu_sc0008989.1_g000003 Rmu_sc0009120.1_g000010 Rmu_sc0009663.1_g000009 Rmu_sc0010035.1_g000001 Rmu_sc0010160.1_g000010 Rmu_sc0010160.1_g000011 Rmu_sc0010953.1_g000004 Rmu_sc0011008.1_g000006 Rmu_sc0011452.1_g000009 Rmu_sc0012746.1_g000014 Rmu_sc0013612.1_g000017 Rmu_sc0013951.1_g000011 Rmu_sc0014162.1_g000009 Rmu_sc0014162.1_g000010 Rmu_sc0016149.1_g000003 Rmu_sc0016418.1_g000008 Rmu_sc0016418.1_g000009 Rmu_sc0017353.1_g000001 Rmu_sc0017353.1_g000002 Rmu_sc0018537.1_g000012 Rmu_sc0019739.1_g000003 Rmu_sc0019739.1_g000004 Rmu_sc0020186.1_g000016 Rmu_sc0021611.1_g000001 Rmu_sc0022755.1_g000003 Rmu_sc0024226.1_g000006 Rmu_sc0025769.1_g000004 Rmu_sc0025769.1_g000005 Rmu_sc0030235.1_g000004 Rmu_sc0035508.1_g000007 Rmu_sc0036413.1_g000001 Rmu_sc0037646.1_g000001 Rmu_sc0037646.1_g000002 Rmu_sc0037647.1_g000001 Rmu_sc0037647.1_g000002 Rmu_sc0037678.1_g000001 Rmu_ssc0000072.1_g000010 Rmu_ssc0000116.1_g000041 Rmu_ssc0000127.1_g000018 Rmu_ssc0000175.1_g000018 Rmu_ssc0000175.1_g000019 Rmu_ssc0000175.1_g000020 Rmu_ssc0000197.1_g000037 Rmu_ssc0000213.1_g000051 Rmu_ssc0000359.1_g000008 Rmu_ssc0000392.1_g000019
rosa_roxburghii Rroxscaffold_154G00447930 Rroxscaffold_1G00000570 Rroxscaffold_1G00009890 Rroxscaffold_1G00012210 Rroxscaffold_1G00012960 Rroxscaffold_1G00014650 Rroxscaffold_1G00014660 Rroxscaffold_1G00014670 Rroxscaffold_1G00022880 Rroxscaffold_1G00024640 Rroxscaffold_1G00024650 Rroxscaffold_1G00025670 Rroxscaffold_1G00025680 Rroxscaffold_1G00025690 Rroxscaffold_1G00030660 Rroxscaffold_1G00031340 Rroxscaffold_1G00031350 Rroxscaffold_2G00103100 Rroxscaffold_2G00103120 Rroxscaffold_2G00107390 Rroxscaffold_2G00108940 Rroxscaffold_2G00110610 Rroxscaffold_2G00110620 Rroxscaffold_2G00110710 Rroxscaffold_2G00110720 Rroxscaffold_2G00110730 Rroxscaffold_2G00111170 Rroxscaffold_2G00111510 Rroxscaffold_2G00114750 Rroxscaffold_2G00114760 Rroxscaffold_2G00114770 Rroxscaffold_2G00116270 Rroxscaffold_2G00121090 Rroxscaffold_2G00129350 Rroxscaffold_2G00130410 Rroxscaffold_2G00155930 Rroxscaffold_3G00218120 Rroxscaffold_3G00218330 Rroxscaffold_3G00218340 Rroxscaffold_3G00227530 Rroxscaffold_3G00233140 Rroxscaffold_3G00236800 Rroxscaffold_3G00242370 Rroxscaffold_3G00242380 Rroxscaffold_3G00242410 Rroxscaffold_3G00248720 Rroxscaffold_3G00248730 Rroxscaffold_3G00248770 Rroxscaffold_3G00258550 Rroxscaffold_3G00258560 Rroxscaffold_4G00287000 Rroxscaffold_4G00289070 Rroxscaffold_4G00289080 Rroxscaffold_4G00289100 Rroxscaffold_4G00295600 Rroxscaffold_4G00298090 Rroxscaffold_4G00308330 Rroxscaffold_4G00310570 Rroxscaffold_4G00310580 Rroxscaffold_4G00310620 Rroxscaffold_4G00315750 Rroxscaffold_4G00319620 Rroxscaffold_4G00319630 Rroxscaffold_4G00328870 Rroxscaffold_4G00328880 Rroxscaffold_4G00332120 Rroxscaffold_4G00332310 Rroxscaffold_5G00332660 Rroxscaffold_5G00332710 Rroxscaffold_5G00332970 Rroxscaffold_5G00344920 Rroxscaffold_5G00345540 Rroxscaffold_5G00346760 Rroxscaffold_5G00346770 Rroxscaffold_5G00347420 Rroxscaffold_5G00350360 Rroxscaffold_5G00350370 Rroxscaffold_5G00354490 Rroxscaffold_5G00370760 Rroxscaffold_5G00370770 Rroxscaffold_5G00374010 Rroxscaffold_5G00374020 Rroxscaffold_5G00374490 Rroxscaffold_5G00374510 Rroxscaffold_5G00387640 Rroxscaffold_5G00387650 Rroxscaffold_6G00387870 Rroxscaffold_6G00388560 Rroxscaffold_6G00388570 Rroxscaffold_6G00388670 Rroxscaffold_6G00388680 Rroxscaffold_6G00391960 Rroxscaffold_6G00393010 Rroxscaffold_6G00395010 Rroxscaffold_6G00395020 Rroxscaffold_6G00397990 Rroxscaffold_6G00401460 Rroxscaffold_6G00407850 Rroxscaffold_6G00423090 Rroxscaffold_6G00423100 Rroxscaffold_6G00423110 Rroxscaffold_7G00165960 Rroxscaffold_7G00165970 Rroxscaffold_7G00176270 Rroxscaffold_7G00176280 Rroxscaffold_7G00176600 Rroxscaffold_7G00176610 Rroxscaffold_7G00176620 Rroxscaffold_7G00176660 Rroxscaffold_7G00195710
rosa_rugosa Rorug03G0209000 Rorug05G0468000 Rorug05G0468000
rosa_samantha Rh3AG250900 Rh3AG257700 Rh3BG294700 Rh3CG284700 Rh3CG284800 Rh3DG280200 Rh3DG280300 Rh3DG280500 Rh3DG287600 Rh3DG287700 Rh4BG408500 Rh4DG402700 Rh6CG194400 Rh6CG194600 Rh6DG186400 Rh6DG186500 Rh7AG218100 Rh7AG278800 Rh7BG224200 Rh7CG231300 Rh7CG231400 Rh7DG225400
rosa_wichuraiana Rw3G022640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 207
AccII CGCG 7 cut(s) 33, 115, 142, 175, 177, 255, 261
AcyI GRCGYC 1 cut(s) 208
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 6 cut(s) 59, 221, 423, 438, 467, 482
AgsI TTSAA 1 cut(s) 278
AluBI AGCT 4 cut(s) 269, 316, 400, 490
AluI AGCT 4 cut(s) 269, 316, 400, 490
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 3 cut(s) 99, 175, 355
Ama87I CYCGRG 4 cut(s) 43, 54, 118, 460
AoxI GGCC 4 cut(s) 26, 337, 440, 515
ApeKI GCWGC 2 cut(s) 232, 490
AspLEI GCGC 3 cut(s) 117, 177, 210
AspS9I GGNCC 3 cut(s) 331, 337, 582
AsuC2I CCSGG 2 cut(s) 335, 484
AvaI CYCGRG 4 cut(s) 43, 54, 118, 460
AvaII GGWCC 2 cut(s) 331, 582
BanI GGYRCC 1 cut(s) 207
BanII GRGCYC 1 cut(s) 140
BauI CACGAG 3 cut(s) 78, 350, 511
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 2 cut(s) 219, 477
BccI CCATC 3 cut(s) 219, 388, 500
BceAI ACGGC 2 cut(s) 41, 502
BcnI CCSGG 2 cut(s) 335, 484
BcoDI GTCTC 3 cut(s) 99, 175, 355
BfaI CTAG 2 cut(s) 341, 586
BfmI CTRYAG 1 cut(s) 491
BfoI RGCGCY 1 cut(s) 211
BglII AGATCT 1 cut(s) 122
BisI GCNGC 5 cut(s) 34, 203, 206, 233, 491
BlsI GCNGC 5 cut(s) 35, 204, 207, 234, 492
Bme1390I CCNGG 2 cut(s) 335, 484
Bme18I GGWCC 2 cut(s) 331, 582
BmeT110I CYCGRG 4 cut(s) 43, 54, 118, 460
BmgT120I GGNCC 3 cut(s) 331, 337, 582
BmiI GGNNCC 2 cut(s) 209, 338
BmrFI CCNGG 2 cut(s) 335, 484
BmsI GCATC 2 cut(s) 313, 438
BpuMI CCSGG 2 cut(s) 335, 484
BsaHI GRCGYC 1 cut(s) 208
BsaI GGTCTC 2 cut(s) 99, 175
BsaJI CCNNGG 5 cut(s) 253, 334, 443, 518, 544
Bsc4I CCNNNNNNNGG 6 cut(s) 59, 221, 423, 438, 467, 482
Bse3DI GCAATG 1 cut(s) 160
BseDI CCNNGG 5 cut(s) 253, 334, 443, 518, 544
BseGI GGATG 4 cut(s) 211, 399, 453, 511
BseLI CCNNNNNNNGG 6 cut(s) 59, 221, 423, 438, 467, 482
BseMI GCAATG 1 cut(s) 160
BseRI GAGGAG 2 cut(s) 403, 480
BseXI GCAGC 2 cut(s) 219, 477
BseYI CCCAGC 1 cut(s) 535
Bsh1236I CGCG 7 cut(s) 33, 115, 142, 175, 177, 255, 261
Bsh1285I CGRYCG 1 cut(s) 259
BshFI GGCC 4 cut(s) 28, 339, 442, 517
BshNI GGYRCC 1 cut(s) 207
BsiEI CGRYCG 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 351
BsiHKCI CYCGRG 4 cut(s) 43, 54, 118, 460
BsiSI CCGG 2 cut(s) 334, 483
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 6 cut(s) 59, 221, 423, 438, 467, 482
BsmAI GTCTC 3 cut(s) 99, 175, 355
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 4 cut(s) 28, 339, 442, 517
Bso31I GGTCTC 2 cut(s) 99, 175
BsoBI CYCGRG 4 cut(s) 43, 54, 118, 460
Bsp1286I GDGCHC 2 cut(s) 140, 351
Bsp143I GATC 1 cut(s) 122
Bsp68I TCGCGA 1 cut(s) 261
BspANI GGCC 4 cut(s) 28, 339, 442, 517
BspFNI CGCG 7 cut(s) 33, 115, 142, 175, 177, 255, 261
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 2 cut(s) 209, 338
BspMAI CTGCAG 1 cut(s) 495
BspT107I GGYRCC 1 cut(s) 207
BspTNI GGTCTC 2 cut(s) 99, 175
BsrDI GCAATG 1 cut(s) 160
BssECI CCNNGG 5 cut(s) 253, 334, 443, 518, 544
BssMI GATC 1 cut(s) 122
BssNI GRCGYC 1 cut(s) 208
BssSI CACGAG 3 cut(s) 78, 350, 511
BssT1I CCWWGG 1 cut(s) 544
Bst2BI CACGAG 3 cut(s) 78, 350, 511
Bst4CI ACNGT 1 cut(s) 242
BstACI GRCGYC 1 cut(s) 208
BstC8I GCNNGC 4 cut(s) 140, 230, 306, 429
BstDSI CCRYGG 2 cut(s) 253, 518
BstF5I GGATG 4 cut(s) 211, 399, 453, 511
BstFNI CGCG 7 cut(s) 33, 115, 142, 175, 177, 255, 261
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 3 cut(s) 117, 177, 210
BstKTI GATC 1 cut(s) 125
BstMAI GTCTC 3 cut(s) 99, 175, 355
BstMBI GATC 1 cut(s) 122
BstMCI CGRYCG 1 cut(s) 259
BstMWI GCNNNNNNNGC 1 cut(s) 448
BstSCI CCNGG 2 cut(s) 333, 482
BstSFI CTRYAG 1 cut(s) 491
BstUI CGCG 7 cut(s) 33, 115, 142, 175, 177, 255, 261
BstV1I GCAGC 2 cut(s) 219, 477
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
BsuRI GGCC 4 cut(s) 28, 339, 442, 517
BtgI CCRYGG 2 cut(s) 253, 518
BtgZI GCGATG 1 cut(s) 230
BtsCI GGATG 4 cut(s) 211, 399, 453, 511
BtuMI TCGCGA 1 cut(s) 261
Cac8I GCNNGC 4 cut(s) 140, 230, 306, 429
CciI TCATGA 1 cut(s) 319
CfoI GCGC 3 cut(s) 117, 177, 210
Cfr13I GGNCC 3 cut(s) 331, 337, 582
Cfr42I CCGCGG 1 cut(s) 256
Csp6I GTAC 1 cut(s) 179
CviAII CATG 1 cut(s) 320
CviQI GTAC 1 cut(s) 179
DinI GGCGCC 1 cut(s) 209
DpnI GATC 1 cut(s) 124
DpnII GATC 1 cut(s) 122
EciI GGCGGA 2 cut(s) 515, 564
Eco130I CCWWGG 1 cut(s) 544
Eco24I GRGCYC 1 cut(s) 140
Eco31I GGTCTC 2 cut(s) 99, 175
Eco47I GGWCC 2 cut(s) 331, 582
Eco88I CYCGRG 4 cut(s) 43, 54, 118, 460
EcoO109I RGGNCCY 2 cut(s) 337, 582
EcoT14I CCWWGG 1 cut(s) 544
EcoT38I GRGCYC 1 cut(s) 140
EgeI GGCGCC 1 cut(s) 209
EheI GGCGCC 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 544
FaeI CATG 1 cut(s) 323
FaiI YATR 6 cut(s) 128, 220, 222, 321, 359, 419
FaqI GGGAC 1 cut(s) 35
FatI CATG 1 cut(s) 319
FauI CCCGC 2 cut(s) 135, 221
FauNDI CATATG 1 cut(s) 220
Fnu4HI GCNGC 5 cut(s) 34, 203, 206, 233, 491
FokI GGATG 4 cut(s) 198, 406, 460, 518
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 5 cut(s) 34, 203, 206, 233, 491
FspBI CTAG 2 cut(s) 341, 586
GlaI GCGC 3 cut(s) 116, 176, 209
GluI GCNGC 5 cut(s) 34, 203, 206, 233, 491
GsaI CCCAGC 1 cut(s) 539
HaeII RGCGCY 1 cut(s) 211
HaeIII GGCC 4 cut(s) 28, 339, 442, 517
HapII CCGG 2 cut(s) 334, 483
HhaI GCGC 3 cut(s) 117, 177, 210
Hin1I GRCGYC 1 cut(s) 208
Hin1II CATG 1 cut(s) 323
Hin6I GCGC 3 cut(s) 115, 175, 208
HinP1I GCGC 3 cut(s) 115, 175, 208
HinfI GANTC 2 cut(s) 48, 381
HpaII CCGG 2 cut(s) 334, 483
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 6 cut(s) 45, 120, 260, 320, 385, 460
Hpy8I GTNNAC 1 cut(s) 331
HpyAV CCTTC 2 cut(s) 225, 371
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4V TGCA 2 cut(s) 493, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 448
Hsp92I GRCGYC 1 cut(s) 208
Hsp92II CATG 1 cut(s) 323
HspAI GCGC 3 cut(s) 115, 175, 208
KasI GGCGCC 1 cut(s) 207
KspI CCGCGG 1 cut(s) 256
Kzo9I GATC 1 cut(s) 122
LmnI GCTCC 5 cut(s) 301, 346, 397, 462, 522
LpnPI CCDG 5 cut(s) 170, 347, 386, 496, 521
Lsp1109I GCAGC 2 cut(s) 219, 477
LweI GCATC 2 cut(s) 313, 438
MaeI CTAG 2 cut(s) 341, 586
MalI GATC 1 cut(s) 124
MboI GATC 1 cut(s) 122
MboII GAAGA 1 cut(s) 27
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 2 cut(s) 140, 351
MluCI AATT 1 cut(s) 197
Mly113I GGCGCC 1 cut(s) 208
MlyI GAGTC 1 cut(s) 57
MspA1I CMGCKG 1 cut(s) 255
MspI CCGG 2 cut(s) 334, 483
MspR9I CCNGG 2 cut(s) 335, 484
MvnI CGCG 7 cut(s) 33, 115, 142, 175, 177, 255, 261
MwoI GCNNNNNNNGC 1 cut(s) 448
NarI GGCGCC 1 cut(s) 208
NciI CCSGG 2 cut(s) 335, 484
NdeI CATATG 1 cut(s) 220
NdeII GATC 1 cut(s) 122
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 2 cut(s) 209, 338
NmeAIII GCCGAG 2 cut(s) 319, 468
NruI TCGCGA 1 cut(s) 261
PaeR7I CTCGAG 1 cut(s) 118
PagI TCATGA 1 cut(s) 319
PfeI GAWTC 1 cut(s) 381
PkrI GCNGC 5 cut(s) 35, 204, 207, 234, 492
PleI GAGTC 1 cut(s) 56
PluTI GGCGCC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 56
PpuMI RGGWCCY 1 cut(s) 582
Psp5II RGGWCCY 1 cut(s) 582
PspFI CCCAGC 1 cut(s) 535
PspN4I GGNNCC 2 cut(s) 209, 338
PspPI GGNCC 3 cut(s) 331, 337, 582
PspPPI RGGWCCY 1 cut(s) 582
PstI CTGCAG 1 cut(s) 495
PsuI RGATCY 1 cut(s) 122
RruI TCGCGA 1 cut(s) 261
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SacII CCGCGG 1 cut(s) 256
SatI GCNGC 5 cut(s) 34, 203, 206, 233, 491
Sau3AI GATC 1 cut(s) 122
Sau96I GGNCC 3 cut(s) 331, 337, 582
SchI GAGTC 1 cut(s) 57
ScrFI CCNGG 2 cut(s) 335, 484
SduI GDGCHC 2 cut(s) 140, 351
SetI ASST 8 cut(s) 95, 162, 271, 318, 402, 478, 492, 584
SfaNI GCATC 2 cut(s) 313, 438
SfcI CTRYAG 1 cut(s) 491
SfoI GGCGCC 1 cut(s) 209
Sfr274I CTCGAG 1 cut(s) 118
Sfr303I CCGCGG 1 cut(s) 256
SgrBI CCGCGG 1 cut(s) 256
SinI GGWCC 2 cut(s) 331, 582
SlaI CTCGAG 1 cut(s) 118
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 1 cut(s) 197
SspDI GGCGCC 1 cut(s) 207
SspMI CTAG 2 cut(s) 341, 586
StyD4I CCNGG 2 cut(s) 333, 482
StyI CCWWGG 1 cut(s) 544
TaaI ACNGT 1 cut(s) 242
TaqI TCGA 3 cut(s) 13, 72, 119
TasI AATT 1 cut(s) 197
TauI GCSGC 3 cut(s) 36, 205, 208
TfiI GAWTC 1 cut(s) 381
TseI GCWGC 2 cut(s) 232, 490
TspDTI ATGAA 4 cut(s) 28, 207, 308, 390
VpaK11BI GGWCC 2 cut(s) 331, 582
XcmI CCANNNNNNNNNTGG 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 118
XspI CTAG 2 cut(s) 341, 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.