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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 266 |
| AccII | CGCG | 2 cut(s) | 29, 303 |
| AciI | CCGC | 1 cut(s) | 200 |
| AclWI | GGATC | 1 cut(s) | 32 |
| AfaI | GTAC | 1 cut(s) | 331 |
| AfeI | AGCGCT | 1 cut(s) | 54 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 108, 109 |
| AgsI | TTSAA | 1 cut(s) | 163 |
| AluBI | AGCT | 3 cut(s) | 139, 211, 259 |
| AluI | AGCT | 3 cut(s) | 139, 211, 259 |
| AlwI | GGATC | 1 cut(s) | 32 |
| Ama87I | CYCGRG | 1 cut(s) | 186 |
| Aor51HI | AGCGCT | 1 cut(s) | 54 |
| AoxI | GGCC | 3 cut(s) | 84, 99, 183 |
| ApaI | GGGCCC | 1 cut(s) | 187 |
| ApeKI | GCWGC | 3 cut(s) | 139, 208, 211 |
| AspLEI | GCGC | 1 cut(s) | 55 |
| AspS9I | GGNCC | 3 cut(s) | 100, 183, 184 |
| AvaI | CYCGRG | 1 cut(s) | 186 |
| BaeGI | GKGCMC | 1 cut(s) | 187 |
| BanI | GGYRCC | 1 cut(s) | 266 |
| BanII | GRGCYC | 1 cut(s) | 187 |
| BbvI | GCAGC | 3 cut(s) | 126, 198, 220 |
| BccI | CCATC | 1 cut(s) | 31 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BfmI | CTRYAG | 1 cut(s) | 212 |
| BfoI | RGCGCY | 1 cut(s) | 56 |
| BisI | GCNGC | 3 cut(s) | 140, 209, 212 |
| BlsI | GCNGC | 3 cut(s) | 141, 210, 213 |
| BmcAI | AGTACT | 1 cut(s) | 331 |
| BmeT110I | CYCGRG | 1 cut(s) | 186 |
| BmgT120I | GGNCC | 3 cut(s) | 100, 183, 184 |
| BmiI | GGNNCC | 4 cut(s) | 102, 185, 268, 288 |
| BmrI | ACTGGG | 1 cut(s) | 141 |
| BmuI | ACTGGG | 1 cut(s) | 141 |
| BsaJI | CCNNGG | 1 cut(s) | 273 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 108, 109 |
| Bse1I | ACTGG | 1 cut(s) | 136 |
| BseDI | CCNNGG | 1 cut(s) | 273 |
| BseGI | GGATG | 2 cut(s) | 42, 70 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 108, 109 |
| BseMII | CTCAG | 1 cut(s) | 240 |
| BseNI | ACTGG | 1 cut(s) | 136 |
| BseRI | GAGGAG | 1 cut(s) | 188 |
| BseSI | GKGCMC | 1 cut(s) | 187 |
| BseXI | GCAGC | 3 cut(s) | 126, 198, 220 |
| Bsh1236I | CGCG | 2 cut(s) | 29, 303 |
| BshFI | GGCC | 3 cut(s) | 86, 101, 185 |
| BshNI | GGYRCC | 1 cut(s) | 266 |
| BsiHKCI | CYCGRG | 1 cut(s) | 186 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 108, 109 |
| BsnI | GGCC | 3 cut(s) | 86, 101, 185 |
| BsoBI | CYCGRG | 1 cut(s) | 186 |
| Bsp120I | GGGCCC | 1 cut(s) | 183 |
| Bsp1286I | GDGCHC | 1 cut(s) | 187 |
| Bsp143I | GATC | 3 cut(s) | 24, 298, 324 |
| Bsp68I | TCGCGA | 1 cut(s) | 29 |
| BspACI | CCGC | 1 cut(s) | 200 |
| BspANI | GGCC | 3 cut(s) | 86, 101, 185 |
| BspCNI | CTCAG | 1 cut(s) | 241 |
| BspFNI | CGCG | 2 cut(s) | 29, 303 |
| BspLI | GGNNCC | 4 cut(s) | 102, 185, 268, 288 |
| BspMAI | CTGCAG | 1 cut(s) | 216 |
| BspPI | GGATC | 1 cut(s) | 32 |
| BspQI | GCTCTTC | 1 cut(s) | 198 |
| BspT107I | GGYRCC | 1 cut(s) | 266 |
| BsrI | ACTGG | 1 cut(s) | 136 |
| BssECI | CCNNGG | 1 cut(s) | 273 |
| BssMI | GATC | 3 cut(s) | 24, 298, 324 |
| BssT1I | CCWWGG | 1 cut(s) | 273 |
| Bst6I | CTCTTC | 1 cut(s) | 198 |
| BstC8I | GCNNGC | 2 cut(s) | 9, 51 |
| BstDEI | CTNAG | 2 cut(s) | 169, 249 |
| BstF5I | GGATG | 2 cut(s) | 42, 70 |
| BstFNI | CGCG | 2 cut(s) | 29, 303 |
| BstH2I | RGCGCY | 1 cut(s) | 56 |
| BstHHI | GCGC | 1 cut(s) | 55 |
| BstKTI | GATC | 3 cut(s) | 27, 301, 327 |
| BstMBI | GATC | 3 cut(s) | 24, 298, 324 |
| BstSFI | CTRYAG | 1 cut(s) | 212 |
| BstSLI | GKGCMC | 1 cut(s) | 187 |
| BstUI | CGCG | 2 cut(s) | 29, 303 |
| BstV1I | GCAGC | 3 cut(s) | 126, 198, 220 |
| BsuRI | GGCC | 3 cut(s) | 86, 101, 185 |
| BtsCI | GGATG | 2 cut(s) | 42, 70 |
| BtuMI | TCGCGA | 1 cut(s) | 29 |
| Cac8I | GCNNGC | 2 cut(s) | 9, 51 |
| CfoI | GCGC | 1 cut(s) | 55 |
| Cfr13I | GGNCC | 3 cut(s) | 100, 183, 184 |
| CseI | GACGC | 1 cut(s) | 254 |
| Csp6I | GTAC | 1 cut(s) | 330 |
| CviQI | GTAC | 1 cut(s) | 330 |
| DdeI | CTNAG | 2 cut(s) | 169, 249 |
| DpnI | GATC | 3 cut(s) | 26, 300, 326 |
| DpnII | GATC | 3 cut(s) | 24, 298, 324 |
| Eam1104I | CTCTTC | 1 cut(s) | 198 |
| EarI | CTCTTC | 1 cut(s) | 198 |
| EciI | GGCGGA | 1 cut(s) | 215 |
| Eco130I | CCWWGG | 1 cut(s) | 273 |
| Eco24I | GRGCYC | 1 cut(s) | 187 |
| Eco47III | AGCGCT | 1 cut(s) | 54 |
| Eco88I | CYCGRG | 1 cut(s) | 186 |
| EcoO109I | RGGNCCY | 1 cut(s) | 183 |
| EcoT14I | CCWWGG | 1 cut(s) | 273 |
| EcoT38I | GRGCYC | 1 cut(s) | 187 |
| ErhI | CCWWGG | 1 cut(s) | 273 |
| FaiI | YATR | 2 cut(s) | 231, 335 |
| Fnu4HI | GCNGC | 3 cut(s) | 140, 209, 212 |
| FokI | GGATG | 2 cut(s) | 49, 77 |
| FriOI | GRGCYC | 1 cut(s) | 187 |
| Fsp4HI | GCNGC | 3 cut(s) | 140, 209, 212 |
| FspBI | CTAG | 1 cut(s) | 122 |
| GlaI | GCGC | 1 cut(s) | 54 |
| GluI | GCNGC | 3 cut(s) | 140, 209, 212 |
| HaeII | RGCGCY | 1 cut(s) | 56 |
| HaeIII | GGCC | 3 cut(s) | 86, 101, 185 |
| HgaI | GACGC | 1 cut(s) | 254 |
| HhaI | GCGC | 1 cut(s) | 55 |
| Hin6I | GCGC | 1 cut(s) | 53 |
| HinP1I | GCGC | 1 cut(s) | 53 |
| HinfI | GANTC | 1 cut(s) | 113 |
| Hpy188I | TCNGA | 2 cut(s) | 118, 236 |
| Hpy188III | TCNNGA | 2 cut(s) | 28, 296 |
| HpyAV | CCTTC | 1 cut(s) | 27 |
| HpyCH4IV | ACGT | 1 cut(s) | 241 |
| HpyCH4V | TGCA | 2 cut(s) | 142, 214 |
| HpyF3I | CTNAG | 2 cut(s) | 169, 249 |
| HpySE526I | ACGT | 1 cut(s) | 241 |
| HspAI | GCGC | 1 cut(s) | 53 |
| Kzo9I | GATC | 3 cut(s) | 24, 298, 324 |
| LguI | GCTCTTC | 1 cut(s) | 198 |
| LmnI | GCTCC | 2 cut(s) | 46, 292 |
| LpnPI | CCDG | 4 cut(s) | 117, 140, 200, 309 |
| Lsp1109I | GCAGC | 3 cut(s) | 126, 198, 220 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MaeII | ACGT | 1 cut(s) | 241 |
| MaeIII | GTNAC | 1 cut(s) | 242 |
| MalI | GATC | 3 cut(s) | 26, 300, 326 |
| MboI | GATC | 3 cut(s) | 24, 298, 324 |
| MboII | GAAGA | 2 cut(s) | 215, 334 |
| MhlI | GDGCHC | 1 cut(s) | 187 |
| MluCI | AATT | 1 cut(s) | 218 |
| MlyI | GAGTC | 1 cut(s) | 122 |
| MmeI | TCCRAC | 3 cut(s) | 24, 172, 294 |
| MnlI | CCTC | 7 cut(s) | 76, 102, 145, 166, 169, 219, 310 |
| MspA1I | CMGCKG | 1 cut(s) | 211 |
| MvnI | CGCG | 2 cut(s) | 29, 303 |
| NdeII | GATC | 3 cut(s) | 24, 298, 324 |
| NlaIV | GGNNCC | 4 cut(s) | 102, 185, 268, 288 |
| NmeAIII | GCCGAG | 1 cut(s) | 112 |
| NmuCI | GTSAC | 1 cut(s) | 242 |
| NruI | TCGCGA | 1 cut(s) | 29 |
| PciSI | GCTCTTC | 1 cut(s) | 198 |
| PkrI | GCNGC | 3 cut(s) | 141, 210, 213 |
| PleI | GAGTC | 1 cut(s) | 121 |
| PpsI | GAGTC | 1 cut(s) | 121 |
| PspN4I | GGNNCC | 4 cut(s) | 102, 185, 268, 288 |
| PspOMI | GGGCCC | 1 cut(s) | 183 |
| PspPI | GGNCC | 3 cut(s) | 100, 183, 184 |
| PstI | CTGCAG | 1 cut(s) | 216 |
| PvuII | CAGCTG | 1 cut(s) | 211 |
| RruI | TCGCGA | 1 cut(s) | 29 |
| RsaI | GTAC | 1 cut(s) | 331 |
| RsaNI | GTAC | 1 cut(s) | 330 |
| SapI | GCTCTTC | 1 cut(s) | 198 |
| SatI | GCNGC | 3 cut(s) | 140, 209, 212 |
| Sau3AI | GATC | 3 cut(s) | 24, 298, 324 |
| Sau96I | GGNCC | 3 cut(s) | 100, 183, 184 |
| ScaI | AGTACT | 1 cut(s) | 331 |
| SchI | GAGTC | 1 cut(s) | 122 |
| SduI | GDGCHC | 1 cut(s) | 187 |
| SetI | ASST | 9 cut(s) | 123, 129, 141, 156, 180, 213, 244, 261, 275 |
| SfcI | CTRYAG | 1 cut(s) | 212 |
| Sse9I | AATT | 1 cut(s) | 218 |
| SsiI | CCGC | 1 cut(s) | 200 |
| SspMI | CTAG | 1 cut(s) | 122 |
| StyI | CCWWGG | 1 cut(s) | 273 |
| TaiI | ACGT | 1 cut(s) | 244 |
| TasI | AATT | 1 cut(s) | 218 |
| TatI | WGTACW | 1 cut(s) | 329 |
| TseFI | GTSAC | 1 cut(s) | 242 |
| TseI | GCWGC | 3 cut(s) | 139, 208, 211 |
| Tsp45I | GTSAC | 1 cut(s) | 242 |
| XspI | CTAG | 1 cut(s) | 122 |
| ZrmI | AGTACT | 1 cut(s) | 331 |