Rmu_sc0003919.1_g000031

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003919.1
OG0000075
Physical Location & Seq
Forward (+)
158748 .. 159239
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003919.1_g000031.1.cds

Sequence Viewer

Length: 378 bp
atgagtgttgggactgaatcggcaagtttcactcattttcagtttaaaacccgacccgaatcggccgtttcgggtcggttctgttcggtcctagaacgcgatgccgagttggagcttcgtgctcctgccttggagagtttggctccttatccagattgcgtggtggatttagaggggcaggttgcaggcgagagagaggcagagatggagcagctcaggaaggagttagccgagcaacaggctcgatcgagtagcttttccgaggagtgcattcgcctgcgcgctgccaccgagacacatttggacaagctagccaaggctaggagggatggtgtggacaaggcggtggatctctatctccggtcagctcacttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.98

Weight (kDa)

5.12

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000075)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0348161 RchiOBHm_Chr1g0367481 RchiOBHm_Chr1g0368431 RchiOBHm_Chr2g0116021 RchiOBHm_Chr2g0133961 RchiOBHm_Chr4g0390151 RchiOBHm_Chr4g0402771 RchiOBHm_Chr4g0419581 RchiOBHm_Chr5g0054351 RchiOBHm_Chr6g0278891 RchiOBHm_Chr7g0201941 RchiOBHm_Chr7g0242761
rosa_laevigata RLG00000002487 RLG00000002488 RLG00000003412 RLG00000003415 RLG00000013607 RLG00000018981 RLG00000018982 RLG00000034520 RLG00000034521
rosa_multiflora Rmu_co8024510.1_g000001 Rmu_co8121892.1_g000001 Rmu_co8133046.1_g000001 Rmu_co8158032.1_g000001 Rmu_co8181114.1_g000001 Rmu_co8202532.1_g000001 Rmu_co8331471.1_g000001 Rmu_co8340209.1_g000001 Rmu_co8359899.1_g000001 Rmu_co8433657.1_g000002 Rmu_co8436419.1_g000002 Rmu_co8458211.1_g000002 Rmu_co8458731.1_g000002 Rmu_co8466361.1_g000001 Rmu_co8474565.1_g000001 Rmu_co8474565.1_g000002 Rmu_co8482201.1_g000001 Rmu_co8491967.1_g000003 Rmu_co8498095.1_g000001 Rmu_co8513217.1_g000002 Rmu_co8518257.1_g000001 Rmu_co8520425.1_g000003 Rmu_co8521283.1_g000003 Rmu_sc0000029.1_g000029 Rmu_sc0000082.1_g000019 Rmu_sc0000147.1_g000107 Rmu_sc0000212.1_g000005 Rmu_sc0000247.1_g000030 Rmu_sc0000367.1_g000175 Rmu_sc0000433.1_g000035 Rmu_sc0000538.1_g000038 Rmu_sc0000550.1_g000010 Rmu_sc0000635.1_g000007 Rmu_sc0000650.1_g000012 Rmu_sc0000652.1_g000009 Rmu_sc0000652.1_g000010 Rmu_sc0000742.1_g000010 Rmu_sc0000750.1_g000007 Rmu_sc0000750.1_g000008 Rmu_sc0000772.1_g000018 Rmu_sc0000830.1_g000026 Rmu_sc0000859.1_g000006 Rmu_sc0001190.1_g000039 Rmu_sc0001190.1_g000050 Rmu_sc0001190.1_g000051 Rmu_sc0001205.1_g000008 Rmu_sc0001294.1_g000025 Rmu_sc0001366.1_g000010 Rmu_sc0001373.1_g000036 Rmu_sc0001423.1_g000046 Rmu_sc0001788.1_g000014 Rmu_sc0001801.1_g000016 Rmu_sc0001849.1_g000032 Rmu_sc0001967.1_g000002 Rmu_sc0002082.1_g000066 Rmu_sc0002250.1_g000013 Rmu_sc0002322.1_g000039 Rmu_sc0002371.1_g000002 Rmu_sc0002522.1_g000036 Rmu_sc0002532.1_g000048 Rmu_sc0002669.1_g000065 Rmu_sc0002669.1_g000067 Rmu_sc0002669.1_g000069 Rmu_sc0002834.1_g000007 Rmu_sc0003226.1_g000070 Rmu_sc0003260.1_g000018 Rmu_sc0003313.1_g000007 Rmu_sc0003441.1_g000018 Rmu_sc0003490.1_g000008 Rmu_sc0003705.1_g000011 Rmu_sc0003737.1_g000013 Rmu_sc0003748.1_g000020 Rmu_sc0003910.1_g000015 Rmu_sc0003919.1_g000029 Rmu_sc0003919.1_g000031 Rmu_sc0004037.1_g000012 Rmu_sc0004099.1_g000003 Rmu_sc0004122.1_g000013 Rmu_sc0004402.1_g000013 Rmu_sc0004646.1_g000035 Rmu_sc0004688.1_g000024 Rmu_sc0004823.1_g000046 Rmu_sc0004869.1_g000003 Rmu_sc0004869.1_g000004 Rmu_sc0005132.1_g000035 Rmu_sc0005190.1_g000001 Rmu_sc0005229.1_g000005 Rmu_sc0005229.1_g000023 Rmu_sc0005363.1_g000034 Rmu_sc0005537.1_g000006 Rmu_sc0005657.1_g000024 Rmu_sc0005856.1_g000011 Rmu_sc0005856.1_g000012 Rmu_sc0005953.1_g000007 Rmu_sc0005971.1_g000015 Rmu_sc0006287.1_g000004 Rmu_sc0006315.1_g000014 Rmu_sc0006518.1_g000003 Rmu_sc0006695.1_g000066 Rmu_sc0006803.1_g000056 Rmu_sc0006822.1_g000002 Rmu_sc0006926.1_g000011 Rmu_sc0007560.1_g000008 Rmu_sc0007582.1_g000005 Rmu_sc0007618.1_g000025 Rmu_sc0007647.1_g000004 Rmu_sc0007656.1_g000013 Rmu_sc0007877.1_g000011 Rmu_sc0008528.1_g000005 Rmu_sc0008528.1_g000006 Rmu_sc0008749.1_g000004 Rmu_sc0008989.1_g000003 Rmu_sc0009120.1_g000010 Rmu_sc0009663.1_g000009 Rmu_sc0010035.1_g000001 Rmu_sc0010160.1_g000010 Rmu_sc0010160.1_g000011 Rmu_sc0010953.1_g000004 Rmu_sc0011008.1_g000006 Rmu_sc0011452.1_g000009 Rmu_sc0012746.1_g000014 Rmu_sc0013612.1_g000017 Rmu_sc0013951.1_g000011 Rmu_sc0014162.1_g000009 Rmu_sc0014162.1_g000010 Rmu_sc0016149.1_g000003 Rmu_sc0016418.1_g000008 Rmu_sc0016418.1_g000009 Rmu_sc0017353.1_g000001 Rmu_sc0017353.1_g000002 Rmu_sc0018537.1_g000012 Rmu_sc0019739.1_g000003 Rmu_sc0019739.1_g000004 Rmu_sc0020186.1_g000016 Rmu_sc0021611.1_g000001 Rmu_sc0022755.1_g000003 Rmu_sc0024226.1_g000006 Rmu_sc0025769.1_g000004 Rmu_sc0025769.1_g000005 Rmu_sc0030235.1_g000004 Rmu_sc0035508.1_g000007 Rmu_sc0036413.1_g000001 Rmu_sc0037646.1_g000001 Rmu_sc0037646.1_g000002 Rmu_sc0037647.1_g000001 Rmu_sc0037647.1_g000002 Rmu_sc0037678.1_g000001 Rmu_ssc0000072.1_g000010 Rmu_ssc0000116.1_g000041 Rmu_ssc0000127.1_g000018 Rmu_ssc0000175.1_g000018 Rmu_ssc0000175.1_g000019 Rmu_ssc0000175.1_g000020 Rmu_ssc0000197.1_g000037 Rmu_ssc0000213.1_g000051 Rmu_ssc0000359.1_g000008 Rmu_ssc0000392.1_g000019
rosa_roxburghii Rroxscaffold_154G00447930 Rroxscaffold_1G00000570 Rroxscaffold_1G00009890 Rroxscaffold_1G00012210 Rroxscaffold_1G00012960 Rroxscaffold_1G00014650 Rroxscaffold_1G00014660 Rroxscaffold_1G00014670 Rroxscaffold_1G00022880 Rroxscaffold_1G00024640 Rroxscaffold_1G00024650 Rroxscaffold_1G00025670 Rroxscaffold_1G00025680 Rroxscaffold_1G00025690 Rroxscaffold_1G00030660 Rroxscaffold_1G00031340 Rroxscaffold_1G00031350 Rroxscaffold_2G00103100 Rroxscaffold_2G00103120 Rroxscaffold_2G00107390 Rroxscaffold_2G00108940 Rroxscaffold_2G00110610 Rroxscaffold_2G00110620 Rroxscaffold_2G00110710 Rroxscaffold_2G00110720 Rroxscaffold_2G00110730 Rroxscaffold_2G00111170 Rroxscaffold_2G00111510 Rroxscaffold_2G00114750 Rroxscaffold_2G00114760 Rroxscaffold_2G00114770 Rroxscaffold_2G00116270 Rroxscaffold_2G00121090 Rroxscaffold_2G00129350 Rroxscaffold_2G00130410 Rroxscaffold_2G00155930 Rroxscaffold_3G00218120 Rroxscaffold_3G00218330 Rroxscaffold_3G00218340 Rroxscaffold_3G00227530 Rroxscaffold_3G00233140 Rroxscaffold_3G00236800 Rroxscaffold_3G00242370 Rroxscaffold_3G00242380 Rroxscaffold_3G00242410 Rroxscaffold_3G00248720 Rroxscaffold_3G00248730 Rroxscaffold_3G00248770 Rroxscaffold_3G00258550 Rroxscaffold_3G00258560 Rroxscaffold_4G00287000 Rroxscaffold_4G00289070 Rroxscaffold_4G00289080 Rroxscaffold_4G00289100 Rroxscaffold_4G00295600 Rroxscaffold_4G00298090 Rroxscaffold_4G00308330 Rroxscaffold_4G00310570 Rroxscaffold_4G00310580 Rroxscaffold_4G00310620 Rroxscaffold_4G00315750 Rroxscaffold_4G00319620 Rroxscaffold_4G00319630 Rroxscaffold_4G00328870 Rroxscaffold_4G00328880 Rroxscaffold_4G00332120 Rroxscaffold_4G00332310 Rroxscaffold_5G00332660 Rroxscaffold_5G00332710 Rroxscaffold_5G00332970 Rroxscaffold_5G00344920 Rroxscaffold_5G00345540 Rroxscaffold_5G00346760 Rroxscaffold_5G00346770 Rroxscaffold_5G00347420 Rroxscaffold_5G00350360 Rroxscaffold_5G00350370 Rroxscaffold_5G00354490 Rroxscaffold_5G00370760 Rroxscaffold_5G00370770 Rroxscaffold_5G00374010 Rroxscaffold_5G00374020 Rroxscaffold_5G00374490 Rroxscaffold_5G00374510 Rroxscaffold_5G00387640 Rroxscaffold_5G00387650 Rroxscaffold_6G00387870 Rroxscaffold_6G00388560 Rroxscaffold_6G00388570 Rroxscaffold_6G00388670 Rroxscaffold_6G00388680 Rroxscaffold_6G00391960 Rroxscaffold_6G00393010 Rroxscaffold_6G00395010 Rroxscaffold_6G00395020 Rroxscaffold_6G00397990 Rroxscaffold_6G00401460 Rroxscaffold_6G00407850 Rroxscaffold_6G00423090 Rroxscaffold_6G00423100 Rroxscaffold_6G00423110 Rroxscaffold_7G00165960 Rroxscaffold_7G00165970 Rroxscaffold_7G00176270 Rroxscaffold_7G00176280 Rroxscaffold_7G00176600 Rroxscaffold_7G00176610 Rroxscaffold_7G00176620 Rroxscaffold_7G00176660 Rroxscaffold_7G00195710
rosa_rugosa Rorug03G0209000 Rorug05G0468000 Rorug05G0468000
rosa_samantha Rh3AG250900 Rh3AG257700 Rh3BG294700 Rh3CG284700 Rh3CG284800 Rh3DG280200 Rh3DG280300 Rh3DG280500 Rh3DG287600 Rh3DG287700 Rh4BG408500 Rh4DG402700 Rh6CG194400 Rh6CG194600 Rh6DG186400 Rh6DG186500 Rh7AG218100 Rh7AG278800 Rh7BG224200 Rh7CG231300 Rh7CG231400 Rh7DG225400
rosa_wichuraiana Rw3G022640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 169
AccII CGCG 2 cut(s) 99, 282
AciI CCGC 1 cut(s) 344
AclWI GGATC 1 cut(s) 357
AcoI YGGCCR 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 321
AluBI AGCT 5 cut(s) 115, 214, 255, 310, 368
AluI AGCT 5 cut(s) 115, 214, 255, 310, 368
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 287
AlwI GGATC 1 cut(s) 357
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 2 cut(s) 211, 284
AspLEI GCGC 2 cut(s) 282, 284
AspS9I GGNCC 1 cut(s) 88
AsuNHI GCTAGC 1 cut(s) 310
AvaII GGWCC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 2 cut(s) 223, 271
BccI CCATC 2 cut(s) 199, 323
BceAI ACGGC 1 cut(s) 50
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BcoDI GTCTC 1 cut(s) 287
BfaI CTAG 3 cut(s) 92, 311, 321
BfuAI ACCTGC 1 cut(s) 169
BisI GCNGC 2 cut(s) 212, 285
BlsI GCNGC 2 cut(s) 213, 286
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 144
BmsI GCATC 1 cut(s) 91
BmtI GCTAGC 1 cut(s) 314
BplI GAGNNNNNCTC 2 cut(s) 127, 159
Bpu10I CCTNAGC 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 354
BsaJI CCNNGG 3 cut(s) 129, 261, 315
BsaWI WCCGGW 1 cut(s) 360
BsaXI ACNNNNNCTCC 2 cut(s) 316, 346
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse8I GATNNNNATC 1 cut(s) 354
BseDI CCNNGG 3 cut(s) 129, 261, 315
BseGI GGATG 1 cut(s) 334
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 229
BsePI GCGCGC 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 278
BseX3I CGGCCG 1 cut(s) 63
BseXI GCAGC 2 cut(s) 223, 271
Bsh1236I CGCG 2 cut(s) 99, 282
Bsh1285I CGRYCG 2 cut(s) 66, 248
BshFI GGCC 1 cut(s) 65
BsiEI CGRYCG 2 cut(s) 66, 248
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 361
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 321
BsmAI GTCTC 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 25
BsmI GAATGC 1 cut(s) 270
BsnI GGCC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 2 cut(s) 245, 349
BspACI CCGC 1 cut(s) 344
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 228
BspFNI CGCG 2 cut(s) 99, 282
BspLI GGNNCC 1 cut(s) 144
BspMI ACCTGC 1 cut(s) 169
BspOI GCTAGC 1 cut(s) 314
BspPI GGATC 1 cut(s) 357
BssECI CCNNGG 3 cut(s) 129, 261, 315
BssHII GCGCGC 1 cut(s) 280
BssMI GATC 2 cut(s) 245, 349
BssT1I CCWWGG 2 cut(s) 129, 315
BstC8I GCNNGC 4 cut(s) 187, 278, 282, 312
BstDEI CTNAG 1 cut(s) 215
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 2 cut(s) 99, 282
BstHHI GCGC 2 cut(s) 282, 284
BstKTI GATC 2 cut(s) 248, 352
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 2 cut(s) 245, 349
BstMCI CGRYCG 2 cut(s) 66, 248
BstUI CGCG 2 cut(s) 99, 282
BstV1I GCAGC 2 cut(s) 223, 271
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BstZI CGGCCG 1 cut(s) 63
BsuRI GGCC 1 cut(s) 65
BtgZI GCGATG 1 cut(s) 114
BtsCI GGATG 1 cut(s) 334
BveI ACCTGC 1 cut(s) 169
Cac8I GCNNGC 4 cut(s) 187, 278, 282, 312
CfoI GCGC 2 cut(s) 282, 284
Cfr13I GGNCC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 215
DpnI GATC 2 cut(s) 247, 351
DpnII GATC 2 cut(s) 245, 349
DraI TTTAAA 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 63
EagI CGGCCG 1 cut(s) 63
EclXI CGGCCG 1 cut(s) 63
Eco130I CCWWGG 2 cut(s) 129, 315
Eco47I GGWCC 1 cut(s) 88
Eco52I CGGCCG 1 cut(s) 63
EcoT14I CCWWGG 2 cut(s) 129, 315
ErhI CCWWGG 2 cut(s) 129, 315
FaqI GGGAC 1 cut(s) 25
Fnu4HI GCNGC 2 cut(s) 212, 285
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 2 cut(s) 212, 285
FspBI CTAG 3 cut(s) 92, 311, 321
GlaI GCGC 2 cut(s) 281, 283
GluI GCNGC 2 cut(s) 212, 285
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 361
HhaI GCGC 2 cut(s) 282, 284
Hin6I GCGC 2 cut(s) 280, 282
HinP1I GCGC 2 cut(s) 280, 282
HinfI GANTC 2 cut(s) 17, 59
HpaII CCGG 1 cut(s) 361
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 2 cut(s) 152, 217
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 185, 270
HpyF3I CTNAG 1 cut(s) 215
HspAI GCGC 2 cut(s) 280, 282
Kzo9I GATC 2 cut(s) 245, 349
LmnI GCTCC 4 cut(s) 112, 127, 148, 208
LpnPI CCDG 8 cut(s) 138, 164, 165, 171, 202, 224, 290, 374
Lsp1109I GCAGC 2 cut(s) 223, 271
LweI GCATC 1 cut(s) 91
MaeI CTAG 3 cut(s) 92, 311, 321
MalI GATC 2 cut(s) 247, 351
MboI GATC 2 cut(s) 245, 349
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 4 cut(s) 166, 190, 256, 318
MseI TTAA 2 cut(s) 45, 376
MspI CCGG 1 cut(s) 361
Mva1269I GAATGC 1 cut(s) 270
MvnI CGCG 2 cut(s) 99, 282
NdeII GATC 2 cut(s) 245, 349
NheI GCTAGC 1 cut(s) 310
NlaIV GGNNCC 1 cut(s) 144
NmeAIII GCCGAG 2 cut(s) 130, 256
PauI GCGCGC 1 cut(s) 280
PctI GAATGC 1 cut(s) 270
PfeI GAWTC 2 cut(s) 17, 59
PkrI GCNGC 2 cut(s) 213, 286
Ple19I CGATCG 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 88
PsuI RGATCY 1 cut(s) 349
PteI GCGCGC 1 cut(s) 280
PvuI CGATCG 1 cut(s) 248
SaqAI TTAA 2 cut(s) 45, 376
SatI GCNGC 2 cut(s) 212, 285
Sau3AI GATC 2 cut(s) 245, 349
Sau96I GGNCC 1 cut(s) 88
SduI GDGCHC 1 cut(s) 124
SetI ASST 6 cut(s) 117, 183, 216, 257, 312, 370
SfaNI GCATC 1 cut(s) 91
SinI GGWCC 1 cut(s) 88
SsiI CCGC 1 cut(s) 344
SspMI CTAG 3 cut(s) 92, 311, 321
StyI CCWWGG 2 cut(s) 129, 315
TaqI TCGA 2 cut(s) 244, 248
TaqII GACCGA 1 cut(s) 76
TfiI GAWTC 2 cut(s) 17, 59
Tru1I TTAA 2 cut(s) 45, 376
Tru9I TTAA 2 cut(s) 45, 376
TseI GCWGC 2 cut(s) 211, 284
VpaK11BI GGWCC 1 cut(s) 88
XspI CTAG 3 cut(s) 92, 311, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.