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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 82 |
| AccBSI | CCGCTC | 1 cut(s) | 265 |
| AccII | CGCG | 3 cut(s) | 105, 165, 336 |
| AciI | CCGC | 3 cut(s) | 7, 11, 265 |
| AclWI | GGATC | 1 cut(s) | 294 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 220 |
| AflII | CTTAAG | 1 cut(s) | 22 |
| AgsI | TTSAA | 2 cut(s) | 230, 236 |
| AjnI | CCWGG | 1 cut(s) | 48 |
| AluBI | AGCT | 4 cut(s) | 121, 149, 284, 364 |
| AluI | AGCT | 4 cut(s) | 121, 149, 284, 364 |
| AlwI | GGATC | 1 cut(s) | 294 |
| AoxI | GGCC | 1 cut(s) | 45 |
| ApaI | GGGCCC | 1 cut(s) | 49 |
| ApeKI | GCWGC | 5 cut(s) | 4, 128, 131, 338, 341 |
| AspLEI | GCGC | 3 cut(s) | 105, 336, 338 |
| AspS9I | GGNCC | 3 cut(s) | 45, 46, 94 |
| AvaII | GGWCC | 1 cut(s) | 94 |
| BaeGI | GKGCMC | 1 cut(s) | 49 |
| BanII | GRGCYC | 1 cut(s) | 49 |
| BbvI | GCAGC | 5 cut(s) | 16, 115, 118, 325, 328 |
| BccI | CCATC | 1 cut(s) | 11 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 278, 312 |
| BciT130I | CCWGG | 1 cut(s) | 50 |
| BfmI | CTRYAG | 2 cut(s) | 2, 74 |
| BfrI | CTTAAG | 1 cut(s) | 22 |
| BfuAI | ACCTGC | 1 cut(s) | 82 |
| BisI | GCNGC | 6 cut(s) | 5, 129, 132, 266, 339, 342 |
| BlpI | GCTNAGC | 1 cut(s) | 285 |
| BlsI | GCNGC | 6 cut(s) | 6, 130, 133, 267, 340, 343 |
| Bme1390I | CCNGG | 1 cut(s) | 50 |
| Bme18I | GGWCC | 1 cut(s) | 94 |
| BmgT120I | GGNCC | 3 cut(s) | 45, 46, 94 |
| BmiI | GGNNCC | 2 cut(s) | 47, 96 |
| BmrFI | CCNGG | 1 cut(s) | 50 |
| BmsI | GCATC | 1 cut(s) | 97 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 133, 165 |
| Bpu10I | CCTNAGC | 1 cut(s) | 269 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 285 |
| BsaJI | CCNNGG | 4 cut(s) | 48, 57, 315, 369 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 242, 272 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 220 |
| Bse1I | ACTGG | 1 cut(s) | 303 |
| BseBI | CCWGG | 1 cut(s) | 50 |
| BseDI | CCNNGG | 4 cut(s) | 48, 57, 315, 369 |
| BseGI | GGATG | 2 cut(s) | 22, 229 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 220 |
| BseMII | CTCAG | 2 cut(s) | 276, 283 |
| BseNI | ACTGG | 1 cut(s) | 303 |
| BsePI | GCGCGC | 1 cut(s) | 334 |
| BseRI | GAGGAG | 1 cut(s) | 332 |
| BseSI | GKGCMC | 1 cut(s) | 49 |
| BseXI | GCAGC | 5 cut(s) | 16, 115, 118, 325, 328 |
| Bsh1236I | CGCG | 3 cut(s) | 105, 165, 336 |
| Bsh1285I | CGRYCG | 1 cut(s) | 163 |
| BshFI | GGCC | 1 cut(s) | 47 |
| BsiEI | CGRYCG | 1 cut(s) | 163 |
| BslFI | GGGAC | 2 cut(s) | 80, 371 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 220 |
| BsmFI | GGGAC | 2 cut(s) | 80, 371 |
| BsmI | GAATGC | 1 cut(s) | 324 |
| BsnI | GGCC | 1 cut(s) | 47 |
| Bsp120I | GGGCCC | 1 cut(s) | 45 |
| Bsp1286I | GDGCHC | 1 cut(s) | 49 |
| Bsp143I | GATC | 2 cut(s) | 160, 299 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 285 |
| BspACI | CCGC | 3 cut(s) | 7, 11, 265 |
| BspANI | GGCC | 1 cut(s) | 47 |
| BspCNI | CTCAG | 2 cut(s) | 277, 282 |
| BspFNI | CGCG | 3 cut(s) | 105, 165, 336 |
| BspLI | GGNNCC | 2 cut(s) | 47, 96 |
| BspMAI | CTGCAG | 2 cut(s) | 6, 78 |
| BspMI | ACCTGC | 1 cut(s) | 82 |
| BspPI | GGATC | 1 cut(s) | 294 |
| BspQI | GCTCTTC | 1 cut(s) | 60 |
| BspTI | CTTAAG | 1 cut(s) | 22 |
| BsrBI | CCGCTC | 1 cut(s) | 265 |
| BsrI | ACTGG | 1 cut(s) | 303 |
| BssECI | CCNNGG | 4 cut(s) | 48, 57, 315, 369 |
| BssHII | GCGCGC | 1 cut(s) | 334 |
| BssMI | GATC | 2 cut(s) | 160, 299 |
| BssT1I | CCWWGG | 1 cut(s) | 369 |
| Bst2UI | CCWGG | 1 cut(s) | 50 |
| Bst4CI | ACNGT | 1 cut(s) | 215 |
| Bst6I | CTCTTC | 1 cut(s) | 60 |
| BstAFI | CTTAAG | 1 cut(s) | 22 |
| BstC8I | GCNNGC | 5 cut(s) | 9, 241, 332, 336, 366 |
| BstDEI | CTNAG | 4 cut(s) | 269, 285, 345, 375 |
| BstF5I | GGATG | 2 cut(s) | 22, 229 |
| BstFNI | CGCG | 3 cut(s) | 105, 165, 336 |
| BstHHI | GCGC | 3 cut(s) | 105, 336, 338 |
| BstKTI | GATC | 2 cut(s) | 163, 302 |
| BstMBI | GATC | 2 cut(s) | 160, 299 |
| BstMCI | CGRYCG | 1 cut(s) | 163 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 53 |
| BstNI | CCWGG | 1 cut(s) | 50 |
| BstSCI | CCNGG | 1 cut(s) | 48 |
| BstSFI | CTRYAG | 2 cut(s) | 2, 74 |
| BstSLI | GKGCMC | 1 cut(s) | 49 |
| BstUI | CGCG | 3 cut(s) | 105, 165, 336 |
| BstV1I | GCAGC | 5 cut(s) | 16, 115, 118, 325, 328 |
| BsuRI | GGCC | 1 cut(s) | 47 |
| BtgZI | GCGATG | 1 cut(s) | 120 |
| BtsCI | GGATG | 2 cut(s) | 22, 229 |
| BveI | ACCTGC | 1 cut(s) | 82 |
| Cac8I | GCNNGC | 5 cut(s) | 9, 241, 332, 336, 366 |
| CfoI | GCGC | 3 cut(s) | 105, 336, 338 |
| Cfr13I | GGNCC | 3 cut(s) | 45, 46, 94 |
| CseI | GACGC | 1 cut(s) | 59 |
| CviJI | RGCY | 9 cut(s) | 21, 47, 121, 149, 268, 284, 296, 364, 374 |
| CviKI_1 | RGCY | 9 cut(s) | 21, 47, 121, 149, 268, 284, 296, 364, 374 |
| DdeI | CTNAG | 4 cut(s) | 269, 285, 345, 375 |
| DpnI | GATC | 2 cut(s) | 162, 301 |
| DpnII | GATC | 2 cut(s) | 160, 299 |
| Eam1104I | CTCTTC | 1 cut(s) | 60 |
| EarI | CTCTTC | 1 cut(s) | 60 |
| EciI | GGCGGA | 1 cut(s) | 26 |
| Eco130I | CCWWGG | 1 cut(s) | 369 |
| Eco24I | GRGCYC | 1 cut(s) | 49 |
| Eco47I | GGWCC | 1 cut(s) | 94 |
| EcoO109I | RGGNCCY | 2 cut(s) | 45, 94 |
| EcoRII | CCWGG | 1 cut(s) | 48 |
| EcoT14I | CCWWGG | 1 cut(s) | 369 |
| EcoT38I | GRGCYC | 1 cut(s) | 49 |
| ErhI | CCWWGG | 1 cut(s) | 369 |
| FaqI | GGGAC | 2 cut(s) | 80, 371 |
| Fnu4HI | GCNGC | 6 cut(s) | 5, 129, 132, 266, 339, 342 |
| FokI | GGATG | 2 cut(s) | 29, 236 |
| FriOI | GRGCYC | 1 cut(s) | 49 |
| Fsp4HI | GCNGC | 6 cut(s) | 5, 129, 132, 266, 339, 342 |
| GlaI | GCGC | 3 cut(s) | 104, 335, 337 |
| GluI | GCNGC | 6 cut(s) | 5, 129, 132, 266, 339, 342 |
| HaeIII | GGCC | 1 cut(s) | 47 |
| HgaI | GACGC | 1 cut(s) | 59 |
| HhaI | GCGC | 3 cut(s) | 105, 336, 338 |
| Hin6I | GCGC | 3 cut(s) | 103, 334, 336 |
| HinP1I | GCGC | 3 cut(s) | 103, 334, 336 |
| HincII | GTYRAC | 1 cut(s) | 211 |
| HindII | GTYRAC | 1 cut(s) | 211 |
| HindIII | AAGCTT | 1 cut(s) | 362 |
| Hpy166II | GTNNAC | 1 cut(s) | 211 |
| Hpy188III | TCNNGA | 3 cut(s) | 158, 271, 356 |
| Hpy8I | GTNNAC | 1 cut(s) | 211 |
| HpyAV | CCTTC | 1 cut(s) | 268 |
| HpyCH4III | ACNGT | 1 cut(s) | 215 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 76, 199, 220, 324 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 53 |
| HpyF3I | CTNAG | 4 cut(s) | 269, 285, 345, 375 |
| HspAI | GCGC | 3 cut(s) | 103, 334, 336 |
| Kzo9I | GATC | 2 cut(s) | 160, 299 |
| LguI | GCTCTTC | 1 cut(s) | 60 |
| LmnI | GCTCC | 4 cut(s) | 34, 118, 154, 262 |
| Lsp1109I | GCAGC | 5 cut(s) | 16, 115, 118, 325, 328 |
| LweI | GCATC | 1 cut(s) | 97 |
| MaeIII | GTNAC | 1 cut(s) | 305 |
| MalI | GATC | 2 cut(s) | 162, 301 |
| MbiI | CCGCTC | 1 cut(s) | 265 |
| MboI | GATC | 2 cut(s) | 160, 299 |
| MboII | GAAGA | 1 cut(s) | 77 |
| MhlI | GDGCHC | 1 cut(s) | 49 |
| MmeI | TCCRAC | 2 cut(s) | 96, 240 |
| MnlI | CCTC | 8 cut(s) | 7, 52, 81, 172, 199, 240, 244, 310 |
| MseI | TTAA | 1 cut(s) | 23 |
| MspA1I | CMGCKG | 1 cut(s) | 7 |
| MspCI | CTTAAG | 1 cut(s) | 22 |
| MspR9I | CCNGG | 1 cut(s) | 50 |
| Mva1269I | GAATGC | 1 cut(s) | 324 |
| MvaI | CCWGG | 1 cut(s) | 50 |
| MvnI | CGCG | 3 cut(s) | 105, 165, 336 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 53 |
| NdeII | GATC | 2 cut(s) | 160, 299 |
| NlaIV | GGNNCC | 2 cut(s) | 47, 96 |
| NmeAIII | GCCGAG | 3 cut(s) | 82, 136, 340 |
| PauI | GCGCGC | 1 cut(s) | 334 |
| PciSI | GCTCTTC | 1 cut(s) | 60 |
| PctI | GAATGC | 1 cut(s) | 324 |
| PkrI | GCNGC | 6 cut(s) | 6, 130, 133, 267, 340, 343 |
| Ple19I | CGATCG | 1 cut(s) | 163 |
| PpuMI | RGGWCCY | 1 cut(s) | 94 |
| Psp5II | RGGWCCY | 1 cut(s) | 94 |
| Psp6I | CCWGG | 1 cut(s) | 48 |
| PspGI | CCWGG | 1 cut(s) | 48 |
| PspN4I | GGNNCC | 2 cut(s) | 47, 96 |
| PspOMI | GGGCCC | 1 cut(s) | 45 |
| PspPI | GGNCC | 3 cut(s) | 45, 46, 94 |
| PspPPI | RGGWCCY | 1 cut(s) | 94 |
| PstI | CTGCAG | 2 cut(s) | 6, 78 |
| PteI | GCGCGC | 1 cut(s) | 334 |
| PvuI | CGATCG | 1 cut(s) | 163 |
| SapI | GCTCTTC | 1 cut(s) | 60 |
| SaqAI | TTAA | 1 cut(s) | 23 |
| SatI | GCNGC | 6 cut(s) | 5, 129, 132, 266, 339, 342 |
| Sau3AI | GATC | 2 cut(s) | 160, 299 |
| Sau96I | GGNCC | 3 cut(s) | 45, 46, 94 |
| ScrFI | CCNGG | 1 cut(s) | 50 |
| SduI | GDGCHC | 1 cut(s) | 49 |
| SetI | ASST | 9 cut(s) | 29, 54, 63, 96, 123, 151, 210, 286, 366 |
| SfaNI | GCATC | 1 cut(s) | 97 |
| SfcI | CTRYAG | 2 cut(s) | 2, 74 |
| SinI | GGWCC | 1 cut(s) | 94 |
| SmlI | CTYRAG | 1 cut(s) | 22 |
| SmoI | CTYRAG | 1 cut(s) | 22 |
| SsiI | CCGC | 3 cut(s) | 7, 11, 265 |
| StyD4I | CCNGG | 1 cut(s) | 48 |
| StyI | CCWWGG | 1 cut(s) | 369 |
| TaaI | ACNGT | 1 cut(s) | 215 |
| TaqI | TCGA | 1 cut(s) | 298 |
| TauI | GCSGC | 1 cut(s) | 268 |
| Tru1I | TTAA | 1 cut(s) | 23 |
| Tru9I | TTAA | 1 cut(s) | 23 |
| TseI | GCWGC | 5 cut(s) | 4, 128, 131, 338, 341 |
| Vha464I | CTTAAG | 1 cut(s) | 22 |
| VpaK11BI | GGWCC | 1 cut(s) | 94 |