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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 326 |
| AccII | CGCG | 1 cut(s) | 275 |
| AciI | CCGC | 3 cut(s) | 40, 275, 326 |
| AclWI | GGATC | 1 cut(s) | 144 |
| AcuI | CTGAAG | 1 cut(s) | 186 |
| AdeI | CACNNNGTG | 1 cut(s) | 362 |
| AfaI | GTAC | 1 cut(s) | 107 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 72, 73 |
| AflIII | ACRYGT | 1 cut(s) | 356 |
| AluBI | AGCT | 5 cut(s) | 103, 129, 172, 227, 262 |
| AluI | AGCT | 5 cut(s) | 103, 129, 172, 227, 262 |
| Alw26I | GTCTC | 2 cut(s) | 41, 368 |
| AlwI | GGATC | 1 cut(s) | 144 |
| Ama87I | CYCGRG | 1 cut(s) | 150 |
| AoxI | GGCC | 2 cut(s) | 147, 267 |
| ApaI | GGGCCC | 1 cut(s) | 151 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 171 |
| AspS9I | GGNCC | 4 cut(s) | 88, 147, 148, 268 |
| AsuC2I | CCSGG | 2 cut(s) | 151, 152 |
| AsuHPI | GGTGA | 3 cut(s) | 68, 242, 311 |
| AvaI | CYCGRG | 1 cut(s) | 150 |
| AvaII | GGWCC | 1 cut(s) | 88 |
| BaeGI | GKGCMC | 1 cut(s) | 151 |
| BanII | GRGCYC | 1 cut(s) | 151 |
| BccI | CCATC | 1 cut(s) | 314 |
| BcnI | CCSGG | 2 cut(s) | 151, 152 |
| BcoDI | GTCTC | 2 cut(s) | 41, 368 |
| BfaI | CTAG | 1 cut(s) | 379 |
| BfmI | CTRYAG | 1 cut(s) | 176 |
| BisI | GCNGC | 1 cut(s) | 40 |
| BlsI | GCNGC | 1 cut(s) | 41 |
| Bme1390I | CCNGG | 2 cut(s) | 151, 152 |
| Bme18I | GGWCC | 1 cut(s) | 88 |
| BmeT110I | CYCGRG | 1 cut(s) | 150 |
| BmgT120I | GGNCC | 4 cut(s) | 88, 147, 148, 268 |
| BmiI | GGNNCC | 1 cut(s) | 149 |
| BmrFI | CCNGG | 2 cut(s) | 151, 152 |
| BmrI | ACTGGG | 2 cut(s) | 105, 118 |
| BmuI | ACTGGG | 2 cut(s) | 105, 118 |
| BpuEI | CTTGAG | 1 cut(s) | 145 |
| BpuMI | CCSGG | 2 cut(s) | 151, 152 |
| BsaAI | YACGTR | 1 cut(s) | 359 |
| BsaI | GGTCTC | 2 cut(s) | 41, 368 |
| BsaJI | CCNNGG | 4 cut(s) | 51, 150, 159, 366 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 72, 73 |
| Bse1I | ACTGG | 2 cut(s) | 100, 113 |
| Bse3DI | GCAATG | 1 cut(s) | 60 |
| BseDI | CCNNGG | 4 cut(s) | 51, 150, 159, 366 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 72, 73 |
| BseMI | GCAATG | 1 cut(s) | 60 |
| BseMII | CTCAG | 1 cut(s) | 62 |
| BseNI | ACTGG | 2 cut(s) | 100, 113 |
| BseRI | GAGGAG | 3 cut(s) | 128, 254, 357 |
| BseSI | GKGCMC | 1 cut(s) | 151 |
| Bsh1236I | CGCG | 1 cut(s) | 275 |
| BshFI | GGCC | 2 cut(s) | 149, 269 |
| BsiHKCI | CYCGRG | 1 cut(s) | 150 |
| BsiSI | CCGG | 1 cut(s) | 151 |
| BslFI | GGGAC | 1 cut(s) | 234 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 72, 73 |
| BsmAI | GTCTC | 2 cut(s) | 41, 368 |
| BsmFI | GGGAC | 1 cut(s) | 234 |
| BsnI | GGCC | 2 cut(s) | 149, 269 |
| Bso31I | GGTCTC | 2 cut(s) | 41, 368 |
| BsoBI | CYCGRG | 1 cut(s) | 150 |
| Bsp120I | GGGCCC | 1 cut(s) | 147 |
| Bsp1286I | GDGCHC | 1 cut(s) | 151 |
| Bsp143I | GATC | 3 cut(s) | 14, 136, 337 |
| BspACI | CCGC | 3 cut(s) | 40, 275, 326 |
| BspANI | GGCC | 2 cut(s) | 149, 269 |
| BspCNI | CTCAG | 1 cut(s) | 63 |
| BspFNI | CGCG | 1 cut(s) | 275 |
| BspLI | GGNNCC | 1 cut(s) | 149 |
| BspMAI | CTGCAG | 1 cut(s) | 180 |
| BspPI | GGATC | 1 cut(s) | 144 |
| BspQI | GCTCTTC | 2 cut(s) | 162, 342 |
| BspTNI | GGTCTC | 2 cut(s) | 41, 368 |
| BsrBI | CCGCTC | 1 cut(s) | 326 |
| BsrDI | GCAATG | 1 cut(s) | 60 |
| BsrI | ACTGG | 2 cut(s) | 100, 113 |
| BssECI | CCNNGG | 4 cut(s) | 51, 150, 159, 366 |
| BssMI | GATC | 3 cut(s) | 14, 136, 337 |
| BssT1I | CCWWGG | 1 cut(s) | 51 |
| Bst4CI | ACNGT | 1 cut(s) | 25 |
| Bst6I | CTCTTC | 3 cut(s) | 72, 162, 342 |
| BstBAI | YACGTR | 1 cut(s) | 359 |
| BstC8I | GCNNGC | 3 cut(s) | 37, 198, 260 |
| BstDEI | CTNAG | 1 cut(s) | 71 |
| BstFNI | CGCG | 1 cut(s) | 275 |
| BstKTI | GATC | 3 cut(s) | 17, 139, 340 |
| BstMAI | GTCTC | 2 cut(s) | 41, 368 |
| BstMBI | GATC | 3 cut(s) | 14, 136, 337 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 155 |
| BstSCI | CCNGG | 2 cut(s) | 149, 150 |
| BstSFI | CTRYAG | 1 cut(s) | 176 |
| BstSLI | GKGCMC | 1 cut(s) | 151 |
| BstUI | CGCG | 1 cut(s) | 275 |
| BsuRI | GGCC | 2 cut(s) | 149, 269 |
| Cac8I | GCNNGC | 3 cut(s) | 37, 198, 260 |
| Cfr13I | GGNCC | 4 cut(s) | 88, 147, 148, 268 |
| Cfr9I | CCCGGG | 1 cut(s) | 150 |
| Csp6I | GTAC | 1 cut(s) | 106 |
| CviQI | GTAC | 1 cut(s) | 106 |
| DdeI | CTNAG | 1 cut(s) | 71 |
| DpnI | GATC | 3 cut(s) | 16, 138, 339 |
| DpnII | GATC | 3 cut(s) | 14, 136, 337 |
| DraIII | CACNNNGTG | 1 cut(s) | 362 |
| Eam1104I | CTCTTC | 3 cut(s) | 72, 162, 342 |
| EarI | CTCTTC | 3 cut(s) | 72, 162, 342 |
| Eco130I | CCWWGG | 1 cut(s) | 51 |
| Eco24I | GRGCYC | 1 cut(s) | 151 |
| Eco31I | GGTCTC | 2 cut(s) | 41, 368 |
| Eco47I | GGWCC | 1 cut(s) | 88 |
| Eco57I | CTGAAG | 1 cut(s) | 186 |
| Eco88I | CYCGRG | 1 cut(s) | 150 |
| EcoO109I | RGGNCCY | 2 cut(s) | 147, 268 |
| EcoT14I | CCWWGG | 1 cut(s) | 51 |
| EcoT38I | GRGCYC | 1 cut(s) | 151 |
| ErhI | CCWWGG | 1 cut(s) | 51 |
| FaiI | YATR | 1 cut(s) | 354 |
| FaqI | GGGAC | 1 cut(s) | 234 |
| FauI | CCCGC | 1 cut(s) | 268 |
| Fnu4HI | GCNGC | 1 cut(s) | 40 |
| FriOI | GRGCYC | 1 cut(s) | 151 |
| Fsp4HI | GCNGC | 1 cut(s) | 40 |
| FspBI | CTAG | 1 cut(s) | 379 |
| GluI | GCNGC | 1 cut(s) | 40 |
| HaeIII | GGCC | 2 cut(s) | 149, 269 |
| HapII | CCGG | 1 cut(s) | 151 |
| HinfI | GANTC | 1 cut(s) | 82 |
| HpaII | CCGG | 1 cut(s) | 151 |
| HphI | GGTGA | 3 cut(s) | 68, 242, 311 |
| Hpy188III | TCNNGA | 1 cut(s) | 86 |
| HpyAV | CCTTC | 2 cut(s) | 25, 239 |
| HpyCH4III | ACNGT | 1 cut(s) | 25 |
| HpyCH4IV | ACGT | 2 cut(s) | 211, 358 |
| HpyCH4V | TGCA | 3 cut(s) | 178, 215, 295 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 155 |
| HpyF3I | CTNAG | 1 cut(s) | 71 |
| HpySE526I | ACGT | 2 cut(s) | 211, 358 |
| Kzo9I | GATC | 3 cut(s) | 14, 136, 337 |
| LguI | GCTCTTC | 2 cut(s) | 162, 342 |
| LmnI | GCTCC | 2 cut(s) | 193, 323 |
| LpnPI | CCDG | 8 cut(s) | 71, 81, 94, 164, 164, 182, 191, 213 |
| MaeI | CTAG | 1 cut(s) | 379 |
| MaeII | ACGT | 2 cut(s) | 211, 358 |
| MaeIII | GTNAC | 1 cut(s) | 56 |
| MalI | GATC | 3 cut(s) | 16, 138, 339 |
| MbiI | CCGCTC | 1 cut(s) | 326 |
| MboI | GATC | 3 cut(s) | 14, 136, 337 |
| MboII | GAAGA | 3 cut(s) | 89, 179, 359 |
| MhlI | GDGCHC | 1 cut(s) | 151 |
| MmeI | TCCRAC | 1 cut(s) | 289 |
| MroXI | GAANNNNTTC | 1 cut(s) | 171 |
| MspI | CCGG | 1 cut(s) | 151 |
| MspR9I | CCNGG | 2 cut(s) | 151, 152 |
| MvnI | CGCG | 1 cut(s) | 275 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 155 |
| NciI | CCSGG | 2 cut(s) | 151, 152 |
| NdeII | GATC | 3 cut(s) | 14, 136, 337 |
| NlaIV | GGNNCC | 1 cut(s) | 149 |
| NmeAIII | GCCGAG | 1 cut(s) | 184 |
| NmuCI | GTSAC | 1 cut(s) | 56 |
| PciSI | GCTCTTC | 2 cut(s) | 162, 342 |
| PdmI | GAANNNNTTC | 1 cut(s) | 171 |
| PfeI | GAWTC | 1 cut(s) | 82 |
| PkrI | GCNGC | 1 cut(s) | 41 |
| Ppu21I | YACGTR | 1 cut(s) | 359 |
| PspN4I | GGNNCC | 1 cut(s) | 149 |
| PspOMI | GGGCCC | 1 cut(s) | 147 |
| PspPI | GGNCC | 4 cut(s) | 88, 147, 148, 268 |
| PstI | CTGCAG | 1 cut(s) | 180 |
| RsaI | GTAC | 1 cut(s) | 107 |
| RsaNI | GTAC | 1 cut(s) | 106 |
| SapI | GCTCTTC | 2 cut(s) | 162, 342 |
| SatI | GCNGC | 1 cut(s) | 40 |
| Sau3AI | GATC | 3 cut(s) | 14, 136, 337 |
| Sau96I | GGNCC | 4 cut(s) | 88, 147, 148, 268 |
| ScrFI | CCNGG | 2 cut(s) | 151, 152 |
| SduI | GDGCHC | 1 cut(s) | 151 |
| SfcI | CTRYAG | 1 cut(s) | 176 |
| SinI | GGWCC | 1 cut(s) | 88 |
| SmaI | CCCGGG | 1 cut(s) | 152 |
| SmlI | CTYRAG | 1 cut(s) | 124 |
| SmoI | CTYRAG | 1 cut(s) | 124 |
| SsiI | CCGC | 3 cut(s) | 40, 275, 326 |
| SspMI | CTAG | 1 cut(s) | 379 |
| StyD4I | CCNGG | 2 cut(s) | 149, 150 |
| StyI | CCWWGG | 1 cut(s) | 51 |
| TaaI | ACNGT | 1 cut(s) | 25 |
| TaiI | ACGT | 2 cut(s) | 214, 361 |
| TaqI | TCGA | 1 cut(s) | 340 |
| TatI | WGTACW | 1 cut(s) | 105 |
| TauI | GCSGC | 1 cut(s) | 42 |
| TfiI | GAWTC | 1 cut(s) | 82 |
| TseFI | GTSAC | 1 cut(s) | 56 |
| Tsp45I | GTSAC | 1 cut(s) | 56 |
| TspMI | CCCGGG | 1 cut(s) | 150 |
| VpaK11BI | GGWCC | 1 cut(s) | 88 |
| XmaI | CCCGGG | 1 cut(s) | 150 |
| XmnI | GAANNNNTTC | 1 cut(s) | 171 |
| XspI | CTAG | 1 cut(s) | 379 |