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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 49, 403 |
| AccII | CGCG | 1 cut(s) | 59 |
| AciI | CCGC | 5 cut(s) | 49, 59, 76, 149, 403 |
| AclWI | GGATC | 1 cut(s) | 132 |
| AcuI | CTGAAG | 2 cut(s) | 222, 245 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 82, 358 |
| AgsI | TTSAA | 1 cut(s) | 374 |
| AluBI | AGCT | 5 cut(s) | 259, 269, 422, 447, 468 |
| AluI | AGCT | 5 cut(s) | 259, 269, 422, 447, 468 |
| AlwI | GGATC | 1 cut(s) | 132 |
| Ama87I | CYCGRG | 1 cut(s) | 186 |
| AoxI | GGCC | 1 cut(s) | 183 |
| ApaI | GGGCCC | 1 cut(s) | 187 |
| ApeKI | GCWGC | 2 cut(s) | 266, 269 |
| AspS9I | GGNCC | 3 cut(s) | 183, 184, 232 |
| AsuC2I | CCSGG | 3 cut(s) | 133, 187, 188 |
| AsuHPI | GGTGA | 1 cut(s) | 202 |
| AvaI | CYCGRG | 1 cut(s) | 186 |
| AvaII | GGWCC | 1 cut(s) | 232 |
| BaeGI | GKGCMC | 2 cut(s) | 55, 187 |
| BanII | GRGCYC | 1 cut(s) | 187 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 195, 227 |
| BbvI | GCAGC | 2 cut(s) | 256, 278 |
| BccI | CCATC | 4 cut(s) | 14, 149, 293, 391 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 416, 450 |
| BcnI | CCSGG | 3 cut(s) | 133, 187, 188 |
| BisI | GCNGC | 4 cut(s) | 76, 267, 270, 404 |
| BlpI | GCTNAGC | 1 cut(s) | 423 |
| BlsI | GCNGC | 4 cut(s) | 77, 268, 271, 405 |
| Bme1390I | CCNGG | 3 cut(s) | 133, 187, 188 |
| Bme18I | GGWCC | 1 cut(s) | 232 |
| BmeT110I | CYCGRG | 1 cut(s) | 186 |
| BmgT120I | GGNCC | 3 cut(s) | 183, 184, 232 |
| BmiI | GGNNCC | 2 cut(s) | 185, 288 |
| BmrFI | CCNGG | 3 cut(s) | 133, 187, 188 |
| BmsI | GCATC | 1 cut(s) | 217 |
| Bpu10I | CCTNAGC | 1 cut(s) | 407 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 423 |
| BpuMI | CCSGG | 3 cut(s) | 133, 187, 188 |
| BsaJI | CCNNGG | 2 cut(s) | 186, 273 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 308, 338 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 82, 358 |
| BseDI | CCNNGG | 2 cut(s) | 186, 273 |
| BseGI | GGATG | 2 cut(s) | 160, 367 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 82, 358 |
| BseMII | CTCAG | 3 cut(s) | 152, 414, 421 |
| BseRI | GAGGAG | 1 cut(s) | 80 |
| BseSI | GKGCMC | 2 cut(s) | 55, 187 |
| BseXI | GCAGC | 2 cut(s) | 256, 278 |
| Bsh1236I | CGCG | 1 cut(s) | 59 |
| Bsh1285I | CGRYCG | 1 cut(s) | 440 |
| BshFI | GGCC | 1 cut(s) | 185 |
| BsiEI | CGRYCG | 1 cut(s) | 440 |
| BsiHKCI | CYCGRG | 1 cut(s) | 186 |
| BsiSI | CCGG | 2 cut(s) | 132, 187 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 82, 358 |
| BsmI | GAATGC | 1 cut(s) | 464 |
| BsnI | GGCC | 1 cut(s) | 185 |
| BsoBI | CYCGRG | 1 cut(s) | 186 |
| Bsp120I | GGGCCC | 1 cut(s) | 183 |
| Bsp1286I | GDGCHC | 2 cut(s) | 55, 187 |
| Bsp143I | GATC | 2 cut(s) | 124, 172 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 423 |
| BspACI | CCGC | 5 cut(s) | 49, 59, 76, 149, 403 |
| BspANI | GGCC | 1 cut(s) | 185 |
| BspCNI | CTCAG | 3 cut(s) | 153, 415, 420 |
| BspFNI | CGCG | 1 cut(s) | 59 |
| BspLI | GGNNCC | 2 cut(s) | 185, 288 |
| BspPI | GGATC | 1 cut(s) | 132 |
| BspQI | GCTCTTC | 1 cut(s) | 198 |
| BsrBI | CCGCTC | 2 cut(s) | 49, 403 |
| BssECI | CCNNGG | 2 cut(s) | 186, 273 |
| BssMI | GATC | 2 cut(s) | 124, 172 |
| BssT1I | CCWWGG | 1 cut(s) | 273 |
| Bst4CI | ACNGT | 1 cut(s) | 353 |
| Bst6I | CTCTTC | 1 cut(s) | 198 |
| BstC8I | GCNNGC | 4 cut(s) | 9, 51, 73, 379 |
| BstDEI | CTNAG | 4 cut(s) | 87, 161, 407, 423 |
| BstF5I | GGATG | 2 cut(s) | 160, 367 |
| BstFNI | CGCG | 1 cut(s) | 59 |
| BstKTI | GATC | 2 cut(s) | 127, 175 |
| BstMBI | GATC | 2 cut(s) | 124, 172 |
| BstMCI | CGRYCG | 1 cut(s) | 440 |
| BstSCI | CCNGG | 3 cut(s) | 131, 185, 186 |
| BstSLI | GKGCMC | 2 cut(s) | 55, 187 |
| BstUI | CGCG | 1 cut(s) | 59 |
| BstV1I | GCAGC | 2 cut(s) | 256, 278 |
| BstX2I | RGATCY | 1 cut(s) | 124 |
| BstYI | RGATCY | 1 cut(s) | 124 |
| BsuRI | GGCC | 1 cut(s) | 185 |
| BtsCI | GGATG | 2 cut(s) | 160, 367 |
| Cac8I | GCNNGC | 4 cut(s) | 9, 51, 73, 379 |
| Cfr13I | GGNCC | 3 cut(s) | 183, 184, 232 |
| Cfr9I | CCCGGG | 1 cut(s) | 186 |
| CviAII | CATG | 1 cut(s) | 463 |
| DdeI | CTNAG | 4 cut(s) | 87, 161, 407, 423 |
| DpnI | GATC | 2 cut(s) | 126, 174 |
| DpnII | GATC | 2 cut(s) | 124, 172 |
| Eam1104I | CTCTTC | 1 cut(s) | 198 |
| EarI | CTCTTC | 1 cut(s) | 198 |
| EciI | GGCGGA | 1 cut(s) | 164 |
| Eco130I | CCWWGG | 1 cut(s) | 273 |
| Eco24I | GRGCYC | 1 cut(s) | 187 |
| Eco47I | GGWCC | 1 cut(s) | 232 |
| Eco57I | CTGAAG | 2 cut(s) | 222, 245 |
| Eco88I | CYCGRG | 1 cut(s) | 186 |
| EcoO109I | RGGNCCY | 1 cut(s) | 183 |
| EcoT14I | CCWWGG | 1 cut(s) | 273 |
| EcoT22I | ATGCAT | 1 cut(s) | 464 |
| EcoT38I | GRGCYC | 1 cut(s) | 187 |
| ErhI | CCWWGG | 1 cut(s) | 273 |
| FaeI | CATG | 1 cut(s) | 466 |
| FaiI | YATR | 1 cut(s) | 464 |
| FatI | CATG | 1 cut(s) | 462 |
| FauI | CCCGC | 1 cut(s) | 42 |
| Fnu4HI | GCNGC | 4 cut(s) | 76, 267, 270, 404 |
| FokI | GGATG | 2 cut(s) | 167, 374 |
| FriOI | GRGCYC | 1 cut(s) | 187 |
| Fsp4HI | GCNGC | 4 cut(s) | 76, 267, 270, 404 |
| GluI | GCNGC | 4 cut(s) | 76, 267, 270, 404 |
| HaeIII | GGCC | 1 cut(s) | 185 |
| HapII | CCGG | 2 cut(s) | 132, 187 |
| Hin1II | CATG | 1 cut(s) | 466 |
| HincII | GTYRAC | 1 cut(s) | 349 |
| HindII | GTYRAC | 1 cut(s) | 349 |
| HinfI | GANTC | 3 cut(s) | 113, 331, 433 |
| HpaII | CCGG | 2 cut(s) | 132, 187 |
| HphI | GGTGA | 1 cut(s) | 202 |
| Hpy166II | GTNNAC | 2 cut(s) | 349, 356 |
| Hpy188I | TCNGA | 2 cut(s) | 162, 236 |
| Hpy188III | TCNNGA | 2 cut(s) | 296, 409 |
| Hpy8I | GTNNAC | 2 cut(s) | 349, 356 |
| HpyAV | CCTTC | 3 cut(s) | 223, 379, 406 |
| HpyCH4III | ACNGT | 1 cut(s) | 353 |
| HpyCH4IV | ACGT | 1 cut(s) | 241 |
| HpyCH4V | TGCA | 3 cut(s) | 142, 337, 462 |
| HpyF3I | CTNAG | 4 cut(s) | 87, 161, 407, 423 |
| HpySE526I | ACGT | 1 cut(s) | 241 |
| Hsp92II | CATG | 1 cut(s) | 466 |
| Kzo9I | GATC | 2 cut(s) | 124, 172 |
| LguI | GCTCTTC | 1 cut(s) | 198 |
| LmnI | GCTCC | 3 cut(s) | 256, 292, 400 |
| LpnPI | CCDG | 8 cut(s) | 145, 161, 166, 200, 248, 312, 363, 394 |
| Lsp1109I | GCAGC | 2 cut(s) | 256, 278 |
| LweI | GCATC | 1 cut(s) | 217 |
| MaeII | ACGT | 1 cut(s) | 241 |
| MalI | GATC | 2 cut(s) | 126, 174 |
| MbiI | CCGCTC | 2 cut(s) | 49, 403 |
| MboI | GATC | 2 cut(s) | 124, 172 |
| MboII | GAAGA | 3 cut(s) | 45, 215, 467 |
| MflI | RGATCY | 1 cut(s) | 124 |
| MhlI | GDGCHC | 2 cut(s) | 55, 187 |
| MlyI | GAGTC | 1 cut(s) | 122 |
| MmeI | TCCRAC | 2 cut(s) | 141, 234 |
| MnlI | CCTC | 9 cut(s) | 58, 61, 76, 102, 145, 190, 310, 337, 382 |
| Mph1103I | ATGCAT | 1 cut(s) | 464 |
| MspA1I | CMGCKG | 1 cut(s) | 269 |
| MspI | CCGG | 2 cut(s) | 132, 187 |
| MspR9I | CCNGG | 3 cut(s) | 133, 187, 188 |
| Mva1269I | GAATGC | 1 cut(s) | 464 |
| MvnI | CGCG | 1 cut(s) | 59 |
| NciI | CCSGG | 3 cut(s) | 133, 187, 188 |
| NdeII | GATC | 2 cut(s) | 124, 172 |
| NlaIII | CATG | 1 cut(s) | 466 |
| NlaIV | GGNNCC | 2 cut(s) | 185, 288 |
| NsiI | ATGCAT | 1 cut(s) | 464 |
| PciSI | GCTCTTC | 1 cut(s) | 198 |
| PctI | GAATGC | 1 cut(s) | 464 |
| PfeI | GAWTC | 2 cut(s) | 331, 433 |
| PkrI | GCNGC | 4 cut(s) | 77, 268, 271, 405 |
| PleI | GAGTC | 1 cut(s) | 121 |
| PpsI | GAGTC | 1 cut(s) | 121 |
| PspN4I | GGNNCC | 2 cut(s) | 185, 288 |
| PspOMI | GGGCCC | 1 cut(s) | 183 |
| PspPI | GGNCC | 3 cut(s) | 183, 184, 232 |
| PsuI | RGATCY | 1 cut(s) | 124 |
| PvuII | CAGCTG | 1 cut(s) | 269 |
| SapI | GCTCTTC | 1 cut(s) | 198 |
| SatI | GCNGC | 4 cut(s) | 76, 267, 270, 404 |
| Sau3AI | GATC | 2 cut(s) | 124, 172 |
| Sau96I | GGNCC | 3 cut(s) | 183, 184, 232 |
| SchI | GAGTC | 1 cut(s) | 122 |
| ScrFI | CCNGG | 3 cut(s) | 133, 187, 188 |
| SduI | GDGCHC | 2 cut(s) | 55, 187 |
| SetI | ASST | 9 cut(s) | 180, 234, 244, 261, 271, 348, 424, 449, 470 |
| SfaNI | GCATC | 1 cut(s) | 217 |
| SinI | GGWCC | 1 cut(s) | 232 |
| SmaI | CCCGGG | 1 cut(s) | 188 |
| SsiI | CCGC | 5 cut(s) | 49, 59, 76, 149, 403 |
| StyD4I | CCNGG | 3 cut(s) | 131, 185, 186 |
| StyI | CCWWGG | 1 cut(s) | 273 |
| TaaI | ACNGT | 1 cut(s) | 353 |
| TaiI | ACGT | 1 cut(s) | 244 |
| TaqI | TCGA | 2 cut(s) | 440, 453 |
| TaqII | GACCGA | 1 cut(s) | 426 |
| TauI | GCSGC | 2 cut(s) | 78, 406 |
| TfiI | GAWTC | 2 cut(s) | 331, 433 |
| TseI | GCWGC | 2 cut(s) | 266, 269 |
| TspMI | CCCGGG | 1 cut(s) | 186 |
| VpaK11BI | GGWCC | 1 cut(s) | 232 |
| XmaI | CCCGGG | 1 cut(s) | 186 |
| Zsp2I | ATGCAT | 1 cut(s) | 464 |