Rmu_co8518257.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8518257.1
OG0000075
Physical Location & Seq
Reverse (-)
1644 .. 5091
3448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8518257.1_g000001.1.cds

Sequence Viewer

Length: 1426 bp
cttacttaatctcagccaaaattctctctcatctaacagtaagagcttagtaggtcgacgggcaaaaaacaggtgcaaacaggccgaggatgatatcgctccattgagggagtcaaacttggagcttaccgggaagttgcaacaggtggaggatggacttagaaaggcatatccgagaacgcgatgtcgagttggagcttcaggcggctgccttggagagtttggctccatatcccatcatgtggtgggtttggagaggcaggttggtaatctgcaaagggaagttgaccgtctacgcgatgttaagcttgaagcaggcaagaaagaggcagagatggagcggcttaggaaggagttggtcgagcaccagattcagtcgtgtaacttttccgaagaatgcattcgtctgcgcgttgcttccgagacacatcgggacaagctcagcaaggccagtcgtgatggggcagacaaggaggtggatctccatcttcggtcaagcgattttcaagagaagatgaacaacgccttctcggatggggtcttgcactcgattcgagatggtatcactgctgggtggattgatcaggagaagatggtgcgcaacatgcatgccaagaaagcagcgaggtcgcaagccagtgcagcgagtggtggtcgaagttctgggatcgtcatcctagagcaaccgatgtcggagcatgcgagccccactggaatattgggggcgaggtacaaggcaagaacgctggagaatgaaacagagtggagtggtgtgaccagatgccaaaaaccagatttgggattggcgctggggcgcctgcctctgcccggattggcctttgctctaattgctgcatcttctctaagattagggcggttgtgtcgccatcaggtccttcctggggacaggtggattgccctcaatcctagccctagctgccgagcggttgttcgtcgaattttgacatcaacgtggccacctgcttttggggctcgacctctctgtgctcttgttcgcgctccctatttgccttgtggaggtccaccaatgcaagctcacacatggcggcgaggtcctggcctgatgggcgactgctacccggtcgtgcctccgctgcagtttgggtcagtgggacctgggatgagccctggggtcagtggtgatctgggggtgagccggagctcaggtggtagcctgcttggctatgtttccgtaggtcactccctgggcgaaacccaagaactaagatcattggaggggcggaggctgcaacgatggagatcgggtgacgatatggcggagagtggtgcggtgcaactgccccccagtctttcgcaccggaccccggccagcctatcaatcctccaattcagtgatcttcaatcttctactgaagctcctcaaattccagagaatcagaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

474

Amino Acids

51.59

Weight (kDa)

9.42

Isoelectric Point (pI)

55.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000075)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0348161 RchiOBHm_Chr1g0367481 RchiOBHm_Chr1g0368431 RchiOBHm_Chr2g0116021 RchiOBHm_Chr2g0133961 RchiOBHm_Chr4g0390151 RchiOBHm_Chr4g0402771 RchiOBHm_Chr4g0419581 RchiOBHm_Chr5g0054351 RchiOBHm_Chr6g0278891 RchiOBHm_Chr7g0201941 RchiOBHm_Chr7g0242761
rosa_laevigata RLG00000002487 RLG00000002488 RLG00000003412 RLG00000003415 RLG00000013607 RLG00000018981 RLG00000018982 RLG00000034520 RLG00000034521
rosa_multiflora Rmu_co8024510.1_g000001 Rmu_co8121892.1_g000001 Rmu_co8133046.1_g000001 Rmu_co8158032.1_g000001 Rmu_co8181114.1_g000001 Rmu_co8202532.1_g000001 Rmu_co8331471.1_g000001 Rmu_co8340209.1_g000001 Rmu_co8359899.1_g000001 Rmu_co8433657.1_g000002 Rmu_co8436419.1_g000002 Rmu_co8458211.1_g000002 Rmu_co8458731.1_g000002 Rmu_co8466361.1_g000001 Rmu_co8474565.1_g000001 Rmu_co8474565.1_g000002 Rmu_co8482201.1_g000001 Rmu_co8491967.1_g000003 Rmu_co8498095.1_g000001 Rmu_co8513217.1_g000002 Rmu_co8518257.1_g000001 Rmu_co8520425.1_g000003 Rmu_co8521283.1_g000003 Rmu_sc0000029.1_g000029 Rmu_sc0000082.1_g000019 Rmu_sc0000147.1_g000107 Rmu_sc0000212.1_g000005 Rmu_sc0000247.1_g000030 Rmu_sc0000367.1_g000175 Rmu_sc0000433.1_g000035 Rmu_sc0000538.1_g000038 Rmu_sc0000550.1_g000010 Rmu_sc0000635.1_g000007 Rmu_sc0000650.1_g000012 Rmu_sc0000652.1_g000009 Rmu_sc0000652.1_g000010 Rmu_sc0000742.1_g000010 Rmu_sc0000750.1_g000007 Rmu_sc0000750.1_g000008 Rmu_sc0000772.1_g000018 Rmu_sc0000830.1_g000026 Rmu_sc0000859.1_g000006 Rmu_sc0001190.1_g000039 Rmu_sc0001190.1_g000050 Rmu_sc0001190.1_g000051 Rmu_sc0001205.1_g000008 Rmu_sc0001294.1_g000025 Rmu_sc0001366.1_g000010 Rmu_sc0001373.1_g000036 Rmu_sc0001423.1_g000046 Rmu_sc0001788.1_g000014 Rmu_sc0001801.1_g000016 Rmu_sc0001849.1_g000032 Rmu_sc0001967.1_g000002 Rmu_sc0002082.1_g000066 Rmu_sc0002250.1_g000013 Rmu_sc0002322.1_g000039 Rmu_sc0002371.1_g000002 Rmu_sc0002522.1_g000036 Rmu_sc0002532.1_g000048 Rmu_sc0002669.1_g000065 Rmu_sc0002669.1_g000067 Rmu_sc0002669.1_g000069 Rmu_sc0002834.1_g000007 Rmu_sc0003226.1_g000070 Rmu_sc0003260.1_g000018 Rmu_sc0003313.1_g000007 Rmu_sc0003441.1_g000018 Rmu_sc0003490.1_g000008 Rmu_sc0003705.1_g000011 Rmu_sc0003737.1_g000013 Rmu_sc0003748.1_g000020 Rmu_sc0003910.1_g000015 Rmu_sc0003919.1_g000029 Rmu_sc0003919.1_g000031 Rmu_sc0004037.1_g000012 Rmu_sc0004099.1_g000003 Rmu_sc0004122.1_g000013 Rmu_sc0004402.1_g000013 Rmu_sc0004646.1_g000035 Rmu_sc0004688.1_g000024 Rmu_sc0004823.1_g000046 Rmu_sc0004869.1_g000003 Rmu_sc0004869.1_g000004 Rmu_sc0005132.1_g000035 Rmu_sc0005190.1_g000001 Rmu_sc0005229.1_g000005 Rmu_sc0005229.1_g000023 Rmu_sc0005363.1_g000034 Rmu_sc0005537.1_g000006 Rmu_sc0005657.1_g000024 Rmu_sc0005856.1_g000011 Rmu_sc0005856.1_g000012 Rmu_sc0005953.1_g000007 Rmu_sc0005971.1_g000015 Rmu_sc0006287.1_g000004 Rmu_sc0006315.1_g000014 Rmu_sc0006518.1_g000003 Rmu_sc0006695.1_g000066 Rmu_sc0006803.1_g000056 Rmu_sc0006822.1_g000002 Rmu_sc0006926.1_g000011 Rmu_sc0007560.1_g000008 Rmu_sc0007582.1_g000005 Rmu_sc0007618.1_g000025 Rmu_sc0007647.1_g000004 Rmu_sc0007656.1_g000013 Rmu_sc0007877.1_g000011 Rmu_sc0008528.1_g000005 Rmu_sc0008528.1_g000006 Rmu_sc0008749.1_g000004 Rmu_sc0008989.1_g000003 Rmu_sc0009120.1_g000010 Rmu_sc0009663.1_g000009 Rmu_sc0010035.1_g000001 Rmu_sc0010160.1_g000010 Rmu_sc0010160.1_g000011 Rmu_sc0010953.1_g000004 Rmu_sc0011008.1_g000006 Rmu_sc0011452.1_g000009 Rmu_sc0012746.1_g000014 Rmu_sc0013612.1_g000017 Rmu_sc0013951.1_g000011 Rmu_sc0014162.1_g000009 Rmu_sc0014162.1_g000010 Rmu_sc0016149.1_g000003 Rmu_sc0016418.1_g000008 Rmu_sc0016418.1_g000009 Rmu_sc0017353.1_g000001 Rmu_sc0017353.1_g000002 Rmu_sc0018537.1_g000012 Rmu_sc0019739.1_g000003 Rmu_sc0019739.1_g000004 Rmu_sc0020186.1_g000016 Rmu_sc0021611.1_g000001 Rmu_sc0022755.1_g000003 Rmu_sc0024226.1_g000006 Rmu_sc0025769.1_g000004 Rmu_sc0025769.1_g000005 Rmu_sc0030235.1_g000004 Rmu_sc0035508.1_g000007 Rmu_sc0036413.1_g000001 Rmu_sc0037646.1_g000001 Rmu_sc0037646.1_g000002 Rmu_sc0037647.1_g000001 Rmu_sc0037647.1_g000002 Rmu_sc0037678.1_g000001 Rmu_ssc0000072.1_g000010 Rmu_ssc0000116.1_g000041 Rmu_ssc0000127.1_g000018 Rmu_ssc0000175.1_g000018 Rmu_ssc0000175.1_g000019 Rmu_ssc0000175.1_g000020 Rmu_ssc0000197.1_g000037 Rmu_ssc0000213.1_g000051 Rmu_ssc0000359.1_g000008 Rmu_ssc0000392.1_g000019
rosa_roxburghii Rroxscaffold_154G00447930 Rroxscaffold_1G00000570 Rroxscaffold_1G00009890 Rroxscaffold_1G00012210 Rroxscaffold_1G00012960 Rroxscaffold_1G00014650 Rroxscaffold_1G00014660 Rroxscaffold_1G00014670 Rroxscaffold_1G00022880 Rroxscaffold_1G00024640 Rroxscaffold_1G00024650 Rroxscaffold_1G00025670 Rroxscaffold_1G00025680 Rroxscaffold_1G00025690 Rroxscaffold_1G00030660 Rroxscaffold_1G00031340 Rroxscaffold_1G00031350 Rroxscaffold_2G00103100 Rroxscaffold_2G00103120 Rroxscaffold_2G00107390 Rroxscaffold_2G00108940 Rroxscaffold_2G00110610 Rroxscaffold_2G00110620 Rroxscaffold_2G00110710 Rroxscaffold_2G00110720 Rroxscaffold_2G00110730 Rroxscaffold_2G00111170 Rroxscaffold_2G00111510 Rroxscaffold_2G00114750 Rroxscaffold_2G00114760 Rroxscaffold_2G00114770 Rroxscaffold_2G00116270 Rroxscaffold_2G00121090 Rroxscaffold_2G00129350 Rroxscaffold_2G00130410 Rroxscaffold_2G00155930 Rroxscaffold_3G00218120 Rroxscaffold_3G00218330 Rroxscaffold_3G00218340 Rroxscaffold_3G00227530 Rroxscaffold_3G00233140 Rroxscaffold_3G00236800 Rroxscaffold_3G00242370 Rroxscaffold_3G00242380 Rroxscaffold_3G00242410 Rroxscaffold_3G00248720 Rroxscaffold_3G00248730 Rroxscaffold_3G00248770 Rroxscaffold_3G00258550 Rroxscaffold_3G00258560 Rroxscaffold_4G00287000 Rroxscaffold_4G00289070 Rroxscaffold_4G00289080 Rroxscaffold_4G00289100 Rroxscaffold_4G00295600 Rroxscaffold_4G00298090 Rroxscaffold_4G00308330 Rroxscaffold_4G00310570 Rroxscaffold_4G00310580 Rroxscaffold_4G00310620 Rroxscaffold_4G00315750 Rroxscaffold_4G00319620 Rroxscaffold_4G00319630 Rroxscaffold_4G00328870 Rroxscaffold_4G00328880 Rroxscaffold_4G00332120 Rroxscaffold_4G00332310 Rroxscaffold_5G00332660 Rroxscaffold_5G00332710 Rroxscaffold_5G00332970 Rroxscaffold_5G00344920 Rroxscaffold_5G00345540 Rroxscaffold_5G00346760 Rroxscaffold_5G00346770 Rroxscaffold_5G00347420 Rroxscaffold_5G00350360 Rroxscaffold_5G00350370 Rroxscaffold_5G00354490 Rroxscaffold_5G00370760 Rroxscaffold_5G00370770 Rroxscaffold_5G00374010 Rroxscaffold_5G00374020 Rroxscaffold_5G00374490 Rroxscaffold_5G00374510 Rroxscaffold_5G00387640 Rroxscaffold_5G00387650 Rroxscaffold_6G00387870 Rroxscaffold_6G00388560 Rroxscaffold_6G00388570 Rroxscaffold_6G00388670 Rroxscaffold_6G00388680 Rroxscaffold_6G00391960 Rroxscaffold_6G00393010 Rroxscaffold_6G00395010 Rroxscaffold_6G00395020 Rroxscaffold_6G00397990 Rroxscaffold_6G00401460 Rroxscaffold_6G00407850 Rroxscaffold_6G00423090 Rroxscaffold_6G00423100 Rroxscaffold_6G00423110 Rroxscaffold_7G00165960 Rroxscaffold_7G00165970 Rroxscaffold_7G00176270 Rroxscaffold_7G00176280 Rroxscaffold_7G00176600 Rroxscaffold_7G00176610 Rroxscaffold_7G00176620 Rroxscaffold_7G00176660 Rroxscaffold_7G00195710
rosa_rugosa Rorug03G0209000 Rorug05G0468000 Rorug05G0468000
rosa_samantha Rh3AG250900 Rh3AG257700 Rh3BG294700 Rh3CG284700 Rh3CG284800 Rh3DG280200 Rh3DG280300 Rh3DG280500 Rh3DG287600 Rh3DG287700 Rh4BG408500 Rh4DG402700 Rh6CG194400 Rh6CG194600 Rh6DG186400 Rh6DG186500 Rh7AG218100 Rh7AG278800 Rh7BG224200 Rh7CG231300 Rh7CG231400 Rh7DG225400
rosa_wichuraiana Rw3G022640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 989
Acc16I TGCGCA 1 cut(s) 600
Acc36I ACCTGC 2 cut(s) 251, 989
AccB1I GGYRCC 1 cut(s) 814
AccB7I CCANNNNNTGG 1 cut(s) 242
AccBSI CCGCTC 2 cut(s) 341, 945
AccI GTMKAC 2 cut(s) 56, 293
AccII CGCG 4 cut(s) 182, 298, 412, 1018
AciI CCGC 9 cut(s) 205, 341, 875, 945, 1067, 1113, 1262, 1299, 1311
AclWI GGATC 2 cut(s) 487, 675
AcoI YGGCCR 2 cut(s) 975, 1348
AcsI RAATTY 3 cut(s) 20, 958, 1405
AcuI CTGAAG 2 cut(s) 184, 1414
AcyI GRCGYC 1 cut(s) 815
AfaI GTAC 1 cut(s) 732
AfiI CCNNNNNNNGG 7 cut(s) 242, 798, 828, 902, 987, 1038, 1346
AgsI TTSAA 3 cut(s) 312, 507, 1383
AjnI CCWGG 5 cut(s) 899, 1076, 1136, 1148, 1225
AluBI AGCT 9 cut(s) 46, 125, 198, 308, 440, 937, 1056, 1183, 1398
AluI AGCT 9 cut(s) 46, 125, 198, 308, 440, 937, 1056, 1183, 1398
Alw21I GWGCWC 3 cut(s) 367, 1010, 1185
Alw26I GTCTC 1 cut(s) 417
AlwI GGATC 2 cut(s) 487, 675
AoxI GGCC 6 cut(s) 82, 448, 835, 975, 1079, 1348
ApeKI GCWGC 7 cut(s) 208, 621, 642, 852, 937, 1115, 1268
ApoI RAATTY 3 cut(s) 20, 958, 1405
Asp700I GAANNNNTTC 1 cut(s) 400
AspLEI GCGC 5 cut(s) 412, 601, 809, 817, 1020
AspS9I GGNCC 5 cut(s) 893, 1041, 1074, 1134, 1342
AsuC2I CCSGG 4 cut(s) 131, 829, 1101, 1347
AsuHPI GGTGA 3 cut(s) 1173, 1184, 1299
AvaII GGWCC 5 cut(s) 893, 1041, 1074, 1134, 1342
BalI TGGCCA 1 cut(s) 977
BanI GGYRCC 1 cut(s) 814
BanII GRGCYC 4 cut(s) 708, 995, 1149, 1185
Bbv12I GWGCWC 3 cut(s) 367, 1010, 1185
BbvI GCAGC 7 cut(s) 195, 633, 654, 839, 924, 1102, 1255
BcgI CGANNNNNNTGC 4 cut(s) 534, 568, 610, 644
BciT130I CCWGG 5 cut(s) 901, 1078, 1138, 1150, 1227
BclI TGATCA 1 cut(s) 581
BcnI CCSGG 4 cut(s) 131, 829, 1101, 1347
BcoDI GTCTC 1 cut(s) 417
BfaI CTAG 3 cut(s) 678, 928, 934
BfmI CTRYAG 1 cut(s) 1116
BfoI RGCGCY 2 cut(s) 810, 818
BfuAI ACCTGC 2 cut(s) 251, 989
BglI GCCNNNNNGGC 2 cut(s) 1087, 1201
BlpI GCTNAGC 1 cut(s) 441
Bme1390I CCNGG 9 cut(s) 131, 829, 901, 1078, 1101, 1138, 1150, 1227, 1347
Bme18I GGWCC 5 cut(s) 893, 1041, 1074, 1134, 1342
BmgT120I GGNCC 5 cut(s) 893, 1041, 1074, 1134, 1342
BmiI GGNNCC 4 cut(s) 227, 816, 1135, 1344
BmrFI CCNGG 9 cut(s) 131, 829, 901, 1078, 1101, 1138, 1150, 1227, 1347
BmrI ACTGGG 1 cut(s) 1321
BmsI GCATC 2 cut(s) 771, 864
BmuI ACTGGG 1 cut(s) 1321
BplI GAGNNNNNCTC 2 cut(s) 210, 242
BpmI CTGGAG 1 cut(s) 768
Bpu10I CCTNAGC 2 cut(s) 345, 1184
Bpu1102I GCTNAGC 1 cut(s) 441
BpuMI CCSGG 4 cut(s) 131, 829, 1101, 1347
BsaBI GATNNNNATC 3 cut(s) 484, 672, 1280
BsaHI GRCGYC 1 cut(s) 815
BsaJI CCNNGG 9 cut(s) 85, 212, 900, 1137, 1148, 1149, 1225, 1226, 1345
BsaWI WCCGGW 1 cut(s) 1339
BsaXI ACNNNNNCTCC 6 cut(s) 1172, 1202, 1271, 1301, 1382, 1412
Bsc4I CCNNNNNNNGG 7 cut(s) 242, 798, 828, 902, 987, 1038, 1346
Bse1I ACTGG 4 cut(s) 451, 637, 716, 1327
Bse8I GATNNNNATC 3 cut(s) 484, 672, 1280
BseBI CCWGG 5 cut(s) 901, 1078, 1138, 1150, 1227
BseDI CCNNGG 9 cut(s) 85, 212, 900, 1137, 1148, 1149, 1225, 1226, 1345
BseGI GGATG 5 cut(s) 95, 158, 539, 673, 1147
BseJI GATNNNNATC 3 cut(s) 484, 672, 1280
BseLI CCNNNNNNNGG 7 cut(s) 242, 798, 828, 902, 987, 1038, 1346
BseMII CTCAG 3 cut(s) 26, 455, 1198
BseNI ACTGG 4 cut(s) 451, 637, 716, 1327
BseRI GAGGAG 1 cut(s) 1390
BseXI GCAGC 7 cut(s) 195, 633, 654, 839, 924, 1102, 1255
BseYI CCCAGC 2 cut(s) 570, 809
BsgI GTGCAG 1 cut(s) 661
Bsh1236I CGCG 4 cut(s) 182, 298, 412, 1018
Bsh1285I CGRYCG 1 cut(s) 1105
BshFI GGCC 6 cut(s) 84, 450, 837, 977, 1081, 1350
BshNI GGYRCC 1 cut(s) 814
BsiEI CGRYCG 1 cut(s) 1105
BsiHKAI GWGCWC 3 cut(s) 367, 1010, 1185
BsiSI CCGG 6 cut(s) 130, 829, 1101, 1178, 1340, 1347
BslFI GGGAC 3 cut(s) 447, 918, 1147
BslI CCNNNNNNNGG 7 cut(s) 242, 798, 828, 902, 987, 1038, 1346
BsmAI GTCTC 1 cut(s) 417
BsmFI GGGAC 3 cut(s) 447, 918, 1147
BsmI GAATGC 2 cut(s) 400, 402
BsnI GGCC 6 cut(s) 84, 450, 837, 977, 1081, 1350
Bsp1286I GDGCHC 6 cut(s) 367, 708, 995, 1010, 1149, 1185
Bsp143I GATC 7 cut(s) 479, 581, 667, 1163, 1248, 1281, 1376
Bsp1720I GCTNAGC 1 cut(s) 441
BspACI CCGC 9 cut(s) 205, 341, 875, 945, 1067, 1113, 1262, 1299, 1311
BspANI GGCC 6 cut(s) 84, 450, 837, 977, 1081, 1350
BspCNI CTCAG 3 cut(s) 25, 454, 1197
BspFNI CGCG 4 cut(s) 182, 298, 412, 1018
BspLI GGNNCC 4 cut(s) 227, 816, 1135, 1344
BspMAI CTGCAG 1 cut(s) 1120
BspMI ACCTGC 2 cut(s) 251, 989
BspPI GGATC 2 cut(s) 487, 675
BspT107I GGYRCC 1 cut(s) 814
BsrBI CCGCTC 2 cut(s) 341, 945
BsrI ACTGG 4 cut(s) 451, 637, 716, 1327
BssECI CCNNGG 9 cut(s) 85, 212, 900, 1137, 1148, 1149, 1225, 1226, 1345
BssMI GATC 7 cut(s) 479, 581, 667, 1163, 1248, 1281, 1376
BssNI GRCGYC 1 cut(s) 815
BssT1I CCWWGG 1 cut(s) 212
Bst2UI CCWGG 5 cut(s) 901, 1078, 1138, 1150, 1227
Bst4CI ACNGT 2 cut(s) 39, 291
BstACI GRCGYC 1 cut(s) 815
BstC8I GCNNGC 9 cut(s) 317, 610, 634, 700, 704, 819, 1054, 1197, 1352
BstDEI CTNAG 8 cut(s) 12, 47, 159, 345, 441, 864, 1184, 1245
BstENI CCTNNNNNAGG 1 cut(s) 1036
BstF5I GGATG 5 cut(s) 95, 158, 539, 673, 1147
BstFNI CGCG 4 cut(s) 182, 298, 412, 1018
BstH2I RGCGCY 2 cut(s) 810, 818
BstHHI GCGC 5 cut(s) 412, 601, 809, 817, 1020
BstKTI GATC 7 cut(s) 482, 584, 670, 1166, 1251, 1284, 1379
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 7 cut(s) 479, 581, 667, 1163, 1248, 1281, 1376
BstMCI CGRYCG 1 cut(s) 1105
BstNI CCWGG 5 cut(s) 901, 1078, 1138, 1150, 1227
BstNSI RCATGY 3 cut(s) 608, 612, 702
BstSCI CCNGG 9 cut(s) 129, 827, 899, 1076, 1099, 1136, 1148, 1225, 1345
BstSFI CTRYAG 1 cut(s) 1116
BstUI CGCG 4 cut(s) 182, 298, 412, 1018
BstV1I GCAGC 7 cut(s) 195, 633, 654, 839, 924, 1102, 1255
BstX2I RGATCY 1 cut(s) 479
BstYI RGATCY 1 cut(s) 479
BsuRI GGCC 6 cut(s) 84, 450, 837, 977, 1081, 1350
BtgZI GCGATG 2 cut(s) 197, 313
BtsCI GGATG 5 cut(s) 95, 158, 539, 673, 1147
BtsI GCAGTG 1 cut(s) 565
BtsIMutI CAGTG 6 cut(s) 565, 644, 709, 1135, 1163, 1379
BveI ACCTGC 2 cut(s) 251, 989
Cac8I GCNNGC 9 cut(s) 317, 610, 634, 700, 704, 819, 1054, 1197, 1352
CfoI GCGC 5 cut(s) 412, 601, 809, 817, 1020
Cfr13I GGNCC 5 cut(s) 893, 1041, 1074, 1134, 1342
Csp6I GTAC 1 cut(s) 731
CviAII CATG 5 cut(s) 240, 605, 609, 699, 1063
CviQI GTAC 1 cut(s) 731
DdeI CTNAG 8 cut(s) 12, 47, 159, 345, 441, 864, 1184, 1245
DinI GGCGCC 1 cut(s) 816
DpnI GATC 7 cut(s) 481, 583, 669, 1165, 1250, 1283, 1378
DpnII GATC 7 cut(s) 479, 581, 667, 1163, 1248, 1281, 1376
EaeI YGGCCR 2 cut(s) 975, 1348
EciI GGCGGA 2 cut(s) 1277, 1314
Ecl136II GAGCTC 1 cut(s) 1183
Eco130I CCWWGG 1 cut(s) 212
Eco24I GRGCYC 4 cut(s) 708, 995, 1149, 1185
Eco32I GATATC 1 cut(s) 95
Eco47I GGWCC 5 cut(s) 893, 1041, 1074, 1134, 1342
Eco53kI GAGCTC 1 cut(s) 1183
Eco57I CTGAAG 2 cut(s) 184, 1414
EcoICRI GAGCTC 1 cut(s) 1183
EcoNI CCTNNNNNAGG 1 cut(s) 1036
EcoO109I RGGNCCY 3 cut(s) 893, 1074, 1134
EcoRII CCWGG 5 cut(s) 899, 1076, 1136, 1148, 1225
EcoRV GATATC 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 212
EcoT22I ATGCAT 2 cut(s) 402, 610
EcoT38I GRGCYC 4 cut(s) 708, 995, 1149, 1185
EgeI GGCGCC 1 cut(s) 816
EheI GGCGCC 1 cut(s) 816
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 5 cut(s) 243, 608, 612, 702, 1066
FaiI YATR 9 cut(s) 170, 231, 241, 606, 610, 700, 1064, 1207, 1296
FaqI GGGAC 3 cut(s) 447, 918, 1147
FatI CATG 5 cut(s) 239, 604, 608, 698, 1062
FbaI TGATCA 1 cut(s) 581
FblI GTMKAC 2 cut(s) 56, 293
FokI GGATG 5 cut(s) 102, 165, 546, 660, 1154
FriOI GRGCYC 4 cut(s) 708, 995, 1149, 1185
FspBI CTAG 3 cut(s) 678, 928, 934
FspI TGCGCA 1 cut(s) 600
GlaI GCGC 5 cut(s) 411, 600, 808, 816, 1019
GsaI CCCAGC 2 cut(s) 574, 813
GsuI CTGGAG 1 cut(s) 768
HaeII RGCGCY 2 cut(s) 810, 818
HaeIII GGCC 6 cut(s) 84, 450, 837, 977, 1081, 1350
HapII CCGG 6 cut(s) 130, 829, 1101, 1178, 1340, 1347
HhaI GCGC 5 cut(s) 412, 601, 809, 817, 1020
Hin1I GRCGYC 1 cut(s) 815
Hin1II CATG 5 cut(s) 243, 608, 612, 702, 1066
Hin6I GCGC 5 cut(s) 410, 599, 807, 815, 1018
HinP1I GCGC 5 cut(s) 410, 599, 807, 815, 1018
HincII GTYRAC 2 cut(s) 57, 287
HindII GTYRAC 2 cut(s) 57, 287
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 4 cut(s) 111, 371, 551, 1415
HpaII CCGG 6 cut(s) 130, 829, 1101, 1178, 1340, 1347
HphI GGTGA 3 cut(s) 1173, 1184, 1299
Hpy166II GTNNAC 4 cut(s) 57, 287, 294, 1044
Hpy188I TCNGA 6 cut(s) 175, 392, 422, 533, 695, 1420
Hpy188III TCNNGA 6 cut(s) 432, 456, 507, 555, 585, 1410
Hpy8I GTNNAC 4 cut(s) 57, 287, 294, 1044
Hpy99I CGWCG 2 cut(s) 61, 958
HpyAV CCTTC 3 cut(s) 344, 536, 906
HpyCH4III ACNGT 2 cut(s) 39, 291
HpyCH4IV ACGT 1 cut(s) 972
HpyF3I CTNAG 8 cut(s) 12, 47, 159, 345, 441, 864, 1184, 1245
HpySE526I ACGT 1 cut(s) 972
Hsp92I GRCGYC 1 cut(s) 815
Hsp92II CATG 5 cut(s) 243, 608, 612, 702, 1066
HspAI GCGC 5 cut(s) 410, 599, 807, 815, 1018
KasI GGCGCC 1 cut(s) 814
Ksp22I TGATCA 1 cut(s) 581
Kzo9I GATC 7 cut(s) 479, 581, 667, 1163, 1248, 1281, 1376
LmnI GCTCC 9 cut(s) 104, 122, 195, 231, 338, 695, 1025, 1180, 1403
Lsp1109I GCAGC 7 cut(s) 195, 633, 654, 839, 924, 1102, 1255
LweI GCATC 2 cut(s) 771, 864
MaeI CTAG 3 cut(s) 678, 928, 934
MaeII ACGT 1 cut(s) 972
MaeIII GTNAC 4 cut(s) 381, 773, 1218, 1287
MalI GATC 7 cut(s) 481, 583, 669, 1165, 1250, 1283, 1378
MbiI CCGCTC 2 cut(s) 341, 945
MboI GATC 7 cut(s) 479, 581, 667, 1163, 1248, 1281, 1376
MboII GAAGA 7 cut(s) 405, 480, 524, 602, 850, 1371, 1378
MflI RGATCY 1 cut(s) 479
MhlI GDGCHC 6 cut(s) 367, 708, 995, 1010, 1149, 1185
MlsI TGGCCA 1 cut(s) 977
MluCI AATT 5 cut(s) 20, 847, 958, 1368, 1405
MluNI TGGCCA 1 cut(s) 977
Mly113I GGCGCC 1 cut(s) 815
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 2 cut(s) 173, 673
Mox20I TGGCCA 1 cut(s) 977
Mph1103I ATGCAT 2 cut(s) 402, 610
MroXI GAANNNNTTC 1 cut(s) 400
MscI TGGCCA 1 cut(s) 977
MseI TTAA 2 cut(s) 7, 304
MslI CAYNNNNRTG 1 cut(s) 971
Msp20I TGGCCA 1 cut(s) 977
MspA1I CMGCKG 1 cut(s) 1115
MspI CCGG 6 cut(s) 130, 829, 1101, 1178, 1340, 1347
MspR9I CCNGG 9 cut(s) 131, 829, 901, 1078, 1101, 1138, 1150, 1227, 1347
Mva1269I GAATGC 2 cut(s) 400, 402
MvaI CCWGG 5 cut(s) 901, 1078, 1138, 1150, 1227
MvnI CGCG 4 cut(s) 182, 298, 412, 1018
NarI GGCGCC 1 cut(s) 815
NciI CCSGG 4 cut(s) 131, 829, 1101, 1347
NdeII GATC 7 cut(s) 479, 581, 667, 1163, 1248, 1281, 1376
NlaIII CATG 5 cut(s) 243, 608, 612, 702, 1066
NlaIV GGNNCC 4 cut(s) 227, 816, 1135, 1344
NmeAIII GCCGAG 2 cut(s) 110, 966
NmuCI GTSAC 3 cut(s) 773, 1218, 1287
NsbI TGCGCA 1 cut(s) 600
NsiI ATGCAT 2 cut(s) 402, 610
NspI RCATGY 3 cut(s) 608, 612, 702
PaeI GCATGC 2 cut(s) 612, 702
PaqCI CACCTGC 1 cut(s) 989
PasI CCCWGGG 2 cut(s) 1149, 1226
PcsI WCGNNNNNNNCGW 1 cut(s) 699
PctI GAATGC 2 cut(s) 400, 402
PdmI GAANNNNTTC 1 cut(s) 400
PfeI GAWTC 3 cut(s) 371, 551, 1415
PflMI CCANNNNNTGG 1 cut(s) 242
PleI GAGTC 1 cut(s) 119
PluTI GGCGCC 1 cut(s) 818
PpsI GAGTC 1 cut(s) 119
PpuMI RGGWCCY 3 cut(s) 893, 1074, 1134
Psp124BI GAGCTC 1 cut(s) 1185
Psp5II RGGWCCY 3 cut(s) 893, 1074, 1134
Psp6I CCWGG 5 cut(s) 899, 1076, 1136, 1148, 1225
PspFI CCCAGC 2 cut(s) 570, 809
PspGI CCWGG 5 cut(s) 899, 1076, 1136, 1148, 1225
PspN4I GGNNCC 4 cut(s) 227, 816, 1135, 1344
PspPI GGNCC 5 cut(s) 893, 1041, 1074, 1134, 1342
PspPPI RGGWCCY 3 cut(s) 893, 1074, 1134
PstI CTGCAG 1 cut(s) 1120
PsuI RGATCY 1 cut(s) 479
RsaI GTAC 1 cut(s) 732
RsaNI GTAC 1 cut(s) 731
RseI CAYNNNNRTG 1 cut(s) 971
SacI GAGCTC 1 cut(s) 1185
SalI GTCGAC 1 cut(s) 55
SaqAI TTAA 2 cut(s) 7, 304
Sau3AI GATC 7 cut(s) 479, 581, 667, 1163, 1248, 1281, 1376
Sau96I GGNCC 5 cut(s) 893, 1041, 1074, 1134, 1342
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 9 cut(s) 131, 829, 901, 1078, 1101, 1138, 1150, 1227, 1347
SduI GDGCHC 6 cut(s) 367, 708, 995, 1010, 1149, 1185
SfaNI GCATC 2 cut(s) 771, 864
SfcI CTRYAG 1 cut(s) 1116
SfoI GGCGCC 1 cut(s) 816
SinI GGWCC 5 cut(s) 893, 1041, 1074, 1134, 1342
SmiMI CAYNNNNRTG 1 cut(s) 971
SphI GCATGC 2 cut(s) 612, 702
Sse9I AATT 5 cut(s) 20, 847, 958, 1368, 1405
SsiI CCGC 9 cut(s) 205, 341, 875, 945, 1067, 1113, 1262, 1299, 1311
SspDI GGCGCC 1 cut(s) 814
SspI AATATT 1 cut(s) 718
SspMI CTAG 3 cut(s) 678, 928, 934
SstI GAGCTC 1 cut(s) 1185
StyD4I CCNGG 9 cut(s) 129, 827, 899, 1076, 1099, 1136, 1148, 1225, 1345
StyI CCWWGG 1 cut(s) 212
TaaI ACNGT 2 cut(s) 39, 291
TaiI ACGT 1 cut(s) 975
TaqI TCGA 8 cut(s) 56, 188, 361, 549, 554, 656, 956, 995
TaqII GACCGA 1 cut(s) 481
TasI AATT 5 cut(s) 20, 847, 958, 1368, 1405
TauI GCSGC 3 cut(s) 208, 344, 1070
TfiI GAWTC 3 cut(s) 371, 551, 1415
Tru1I TTAA 2 cut(s) 7, 304
Tru9I TTAA 2 cut(s) 7, 304
TscAI CASTG 6 cut(s) 572, 644, 716, 1135, 1163, 1379
TseFI GTSAC 3 cut(s) 773, 1218, 1287
TseI GCWGC 7 cut(s) 208, 621, 642, 852, 937, 1115, 1268
Tsp45I GTSAC 3 cut(s) 773, 1218, 1287
TspDTI ATGAA 2 cut(s) 531, 769
TspGWI ACGGA 1 cut(s) 1202
TspRI CASTG 6 cut(s) 572, 644, 716, 1135, 1163, 1379
Van91I CCANNNNNTGG 1 cut(s) 242
VpaK11BI GGWCC 5 cut(s) 893, 1041, 1074, 1134, 1342
XagI CCTNNNNNAGG 1 cut(s) 1036
XapI RAATTY 3 cut(s) 20, 958, 1405
XceI RCATGY 3 cut(s) 608, 612, 702
XcmI CCANNNNNNNNNTGG 1 cut(s) 716
XmiI GTMKAC 2 cut(s) 56, 293
XmnI GAANNNNTTC 1 cut(s) 400
XspI CTAG 3 cut(s) 678, 928, 934
Zsp2I ATGCAT 2 cut(s) 402, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.