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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 277 |
| AccBSI | CCGCTC | 1 cut(s) | 367 |
| AccII | CGCG | 2 cut(s) | 438, 666 |
| AciI | CCGC | 4 cut(s) | 316, 367, 481, 491 |
| AclWI | GGATC | 2 cut(s) | 513, 571 |
| AcuI | CTGAAG | 1 cut(s) | 263 |
| AcyI | GRCGYC | 2 cut(s) | 615, 718 |
| AfaI | GTAC | 1 cut(s) | 295 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 74, 238, 532 |
| AluBI | AGCT | 8 cut(s) | 52, 209, 226, 247, 277, 334, 411, 466 |
| AluI | AGCT | 8 cut(s) | 52, 209, 226, 247, 277, 334, 411, 466 |
| Alw21I | GWGCWC | 1 cut(s) | 336 |
| Alw26I | GTCTC | 1 cut(s) | 62 |
| AlwI | GGATC | 2 cut(s) | 513, 571 |
| Ama87I | CYCGRG | 2 cut(s) | 59, 399 |
| AoxI | GGCC | 2 cut(s) | 267, 565 |
| ApaI | GGGCCC | 1 cut(s) | 271 |
| ApeKI | GCWGC | 3 cut(s) | 49, 52, 440 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 605, 637 |
| AspLEI | GCGC | 3 cut(s) | 8, 438, 440 |
| AspS9I | GGNCC | 3 cut(s) | 267, 268, 565 |
| AsuNHI | GCTAGC | 1 cut(s) | 226 |
| AvaI | CYCGRG | 2 cut(s) | 59, 399 |
| BaeGI | GKGCMC | 1 cut(s) | 271 |
| BanII | GRGCYC | 2 cut(s) | 271, 336 |
| BauI | CACGAG | 2 cut(s) | 93, 155 |
| Bbv12I | GWGCWC | 1 cut(s) | 336 |
| BbvI | GCAGC | 3 cut(s) | 39, 61, 427 |
| BccI | CCATC | 3 cut(s) | 92, 355, 578 |
| BceAI | ACGGC | 1 cut(s) | 645 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 380, 414 |
| BcoDI | GTCTC | 1 cut(s) | 62 |
| BfaI | CTAG | 2 cut(s) | 227, 477 |
| BfuAI | ACCTGC | 1 cut(s) | 277 |
| BglII | AGATCT | 1 cut(s) | 137 |
| BisI | GCNGC | 4 cut(s) | 50, 53, 368, 441 |
| BlsI | GCNGC | 4 cut(s) | 51, 54, 369, 442 |
| BmeT110I | CYCGRG | 2 cut(s) | 59, 399 |
| BmgT120I | GGNCC | 3 cut(s) | 267, 268, 565 |
| BmiI | GGNNCC | 2 cut(s) | 269, 566 |
| BmtI | GCTAGC | 1 cut(s) | 230 |
| BpmI | CTGGAG | 1 cut(s) | 54 |
| Bpu10I | CCTNAGC | 1 cut(s) | 371 |
| Bsa29I | ATCGAT | 1 cut(s) | 87 |
| BsaBI | GATNNNNATC | 1 cut(s) | 510 |
| BsaHI | GRCGYC | 2 cut(s) | 615, 718 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 74, 238, 532 |
| Bse1I | ACTGG | 1 cut(s) | 71 |
| Bse8I | GATNNNNATC | 1 cut(s) | 510 |
| BseCI | ATCGAT | 1 cut(s) | 87 |
| BseJI | GATNNNNATC | 1 cut(s) | 510 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 74, 238, 532 |
| BseMII | CTCAG | 1 cut(s) | 385 |
| BseNI | ACTGG | 1 cut(s) | 71 |
| BsePI | GCGCGC | 1 cut(s) | 436 |
| BseRI | GAGGAG | 1 cut(s) | 434 |
| BseSI | GKGCMC | 1 cut(s) | 271 |
| BseXI | GCAGC | 3 cut(s) | 39, 61, 427 |
| Bsh1236I | CGCG | 2 cut(s) | 438, 666 |
| BshFI | GGCC | 2 cut(s) | 269, 567 |
| BshVI | ATCGAT | 1 cut(s) | 87 |
| BsiHKAI | GWGCWC | 1 cut(s) | 336 |
| BsiHKCI | CYCGRG | 2 cut(s) | 59, 399 |
| BslFI | GGGAC | 1 cut(s) | 473 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 74, 238, 532 |
| BsmAI | GTCTC | 1 cut(s) | 62 |
| BsmBI | CGTCTC | 1 cut(s) | 62 |
| BsmFI | GGGAC | 1 cut(s) | 473 |
| BsmI | GAATGC | 1 cut(s) | 426 |
| BsnI | GGCC | 2 cut(s) | 269, 567 |
| BsoBI | CYCGRG | 2 cut(s) | 59, 399 |
| Bsp120I | GGGCCC | 1 cut(s) | 267 |
| Bsp1286I | GDGCHC | 2 cut(s) | 271, 336 |
| Bsp143I | GATC | 4 cut(s) | 137, 217, 505, 576 |
| Bsp68I | TCGCGA | 1 cut(s) | 666 |
| BspACI | CCGC | 4 cut(s) | 316, 367, 481, 491 |
| BspANI | GGCC | 2 cut(s) | 269, 567 |
| BspCNI | CTCAG | 1 cut(s) | 384 |
| BspDI | ATCGAT | 1 cut(s) | 87 |
| BspFNI | CGCG | 2 cut(s) | 438, 666 |
| BspLI | GGNNCC | 2 cut(s) | 269, 566 |
| BspMI | ACCTGC | 1 cut(s) | 277 |
| BspOI | GCTAGC | 1 cut(s) | 230 |
| BspPI | GGATC | 2 cut(s) | 513, 571 |
| BsrBI | CCGCTC | 1 cut(s) | 367 |
| BsrI | ACTGG | 1 cut(s) | 71 |
| BssHII | GCGCGC | 1 cut(s) | 436 |
| BssMI | GATC | 4 cut(s) | 137, 217, 505, 576 |
| BssNI | GRCGYC | 2 cut(s) | 615, 718 |
| BssSI | CACGAG | 2 cut(s) | 93, 155 |
| Bst2BI | CACGAG | 2 cut(s) | 93, 155 |
| Bst4CI | ACNGT | 1 cut(s) | 741 |
| BstACI | GRCGYC | 2 cut(s) | 615, 718 |
| BstC8I | GCNNGC | 4 cut(s) | 228, 320, 343, 438 |
| BstDEI | CTNAG | 1 cut(s) | 371 |
| BstFNI | CGCG | 2 cut(s) | 438, 666 |
| BstHHI | GCGC | 3 cut(s) | 8, 438, 440 |
| BstKTI | GATC | 4 cut(s) | 140, 220, 508, 579 |
| BstMAI | GTCTC | 1 cut(s) | 62 |
| BstMBI | GATC | 4 cut(s) | 137, 217, 505, 576 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 244, 283, 497, 623, 638 |
| BstSLI | GKGCMC | 1 cut(s) | 271 |
| BstUI | CGCG | 2 cut(s) | 438, 666 |
| BstV1I | GCAGC | 3 cut(s) | 39, 61, 427 |
| BstX2I | RGATCY | 2 cut(s) | 137, 505 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 194 |
| BstYI | RGATCY | 2 cut(s) | 137, 505 |
| Bsu15I | ATCGAT | 1 cut(s) | 87 |
| BsuRI | GGCC | 2 cut(s) | 269, 567 |
| BsuTUI | ATCGAT | 1 cut(s) | 87 |
| BtsI | GCAGTG | 1 cut(s) | 507 |
| BtsIMutI | CAGTG | 1 cut(s) | 507 |
| BtuMI | TCGCGA | 1 cut(s) | 666 |
| BveI | ACCTGC | 1 cut(s) | 277 |
| Cac8I | GCNNGC | 4 cut(s) | 228, 320, 343, 438 |
| CfoI | GCGC | 3 cut(s) | 8, 438, 440 |
| Cfr13I | GGNCC | 3 cut(s) | 267, 268, 565 |
| ClaI | ATCGAT | 1 cut(s) | 87 |
| CseI | GACGC | 3 cut(s) | 44, 623, 707 |
| Csp6I | GTAC | 1 cut(s) | 294 |
| CviAII | CATG | 3 cut(s) | 166, 178, 188 |
| CviQI | GTAC | 1 cut(s) | 294 |
| DdeI | CTNAG | 1 cut(s) | 371 |
| DpnI | GATC | 4 cut(s) | 139, 219, 507, 578 |
| DpnII | GATC | 4 cut(s) | 137, 217, 505, 576 |
| Ecl136II | GAGCTC | 1 cut(s) | 334 |
| Eco24I | GRGCYC | 2 cut(s) | 271, 336 |
| Eco53kI | GAGCTC | 1 cut(s) | 334 |
| Eco57I | CTGAAG | 1 cut(s) | 263 |
| Eco88I | CYCGRG | 2 cut(s) | 59, 399 |
| EcoICRI | GAGCTC | 1 cut(s) | 334 |
| EcoO109I | RGGNCCY | 2 cut(s) | 267, 565 |
| EcoT38I | GRGCYC | 2 cut(s) | 271, 336 |
| Esp3I | CGTCTC | 1 cut(s) | 62 |
| FaeI | CATG | 3 cut(s) | 169, 181, 191 |
| FaiI | YATR | 4 cut(s) | 12, 167, 179, 189 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 590, 622 |
| FaqI | GGGAC | 1 cut(s) | 473 |
| FatI | CATG | 3 cut(s) | 165, 177, 187 |
| FauI | CCCGC | 1 cut(s) | 474 |
| Fnu4HI | GCNGC | 4 cut(s) | 50, 53, 368, 441 |
| FriOI | GRGCYC | 2 cut(s) | 271, 336 |
| Fsp4HI | GCNGC | 4 cut(s) | 50, 53, 368, 441 |
| FspBI | CTAG | 2 cut(s) | 227, 477 |
| GlaI | GCGC | 3 cut(s) | 7, 437, 439 |
| GluI | GCNGC | 4 cut(s) | 50, 53, 368, 441 |
| GsuI | CTGGAG | 1 cut(s) | 54 |
| HaeIII | GGCC | 2 cut(s) | 269, 567 |
| HgaI | GACGC | 3 cut(s) | 44, 623, 707 |
| HhaI | GCGC | 3 cut(s) | 8, 438, 440 |
| Hin1I | GRCGYC | 2 cut(s) | 615, 718 |
| Hin1II | CATG | 3 cut(s) | 169, 181, 191 |
| Hin6I | GCGC | 3 cut(s) | 6, 436, 438 |
| HinP1I | GCGC | 3 cut(s) | 6, 436, 438 |
| HincII | GTYRAC | 1 cut(s) | 313 |
| HindII | GTYRAC | 1 cut(s) | 313 |
| HindIII | AAGCTT | 1 cut(s) | 464 |
| HinfI | GANTC | 2 cut(s) | 64, 397 |
| Hpy166II | GTNNAC | 2 cut(s) | 175, 313 |
| Hpy188I | TCNGA | 4 cut(s) | 282, 523, 559, 581 |
| Hpy188III | TCNNGA | 8 cut(s) | 61, 135, 155, 221, 373, 448, 458, 665 |
| Hpy8I | GTNNAC | 2 cut(s) | 175, 313 |
| Hpy99I | CGWCG | 6 cut(s) | 617, 631, 652, 671, 693, 741 |
| HpyAV | CCTTC | 3 cut(s) | 370, 479, 562 |
| HpyCH4III | ACNGT | 1 cut(s) | 741 |
| HpyCH4V | TGCA | 5 cut(s) | 238, 301, 426, 471, 708 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 244, 283, 497, 623, 638 |
| HpyF3I | CTNAG | 1 cut(s) | 371 |
| Hsp92I | GRCGYC | 2 cut(s) | 615, 718 |
| Hsp92II | CATG | 3 cut(s) | 169, 181, 191 |
| HspAI | GCGC | 3 cut(s) | 6, 436, 438 |
| Kzo9I | GATC | 4 cut(s) | 137, 217, 505, 576 |
| LmnI | GCTCC | 3 cut(s) | 223, 331, 364 |
| LpnPI | CCDG | 8 cut(s) | 84, 180, 224, 272, 327, 358, 461, 518 |
| Lsp1109I | GCAGC | 3 cut(s) | 39, 61, 427 |
| MaeI | CTAG | 2 cut(s) | 227, 477 |
| MaeIII | GTNAC | 2 cut(s) | 152, 719 |
| MalI | GATC | 4 cut(s) | 139, 219, 507, 578 |
| MbiI | CCGCTC | 1 cut(s) | 367 |
| MboI | GATC | 4 cut(s) | 137, 217, 505, 576 |
| MboII | GAAGA | 3 cut(s) | 43, 506, 550 |
| MflI | RGATCY | 2 cut(s) | 137, 505 |
| MhlI | GDGCHC | 2 cut(s) | 271, 336 |
| MluCI | AATT | 3 cut(s) | 181, 601, 633 |
| MlyI | GAGTC | 2 cut(s) | 73, 391 |
| MslI | CAYNNNNRTG | 1 cut(s) | 170 |
| MspA1I | CMGCKG | 1 cut(s) | 52 |
| Mva1269I | GAATGC | 1 cut(s) | 426 |
| MvnI | CGCG | 2 cut(s) | 438, 666 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 244, 283, 497, 623, 638 |
| NdeII | GATC | 4 cut(s) | 137, 217, 505, 576 |
| NheI | GCTAGC | 1 cut(s) | 226 |
| NlaIII | CATG | 3 cut(s) | 169, 181, 191 |
| NlaIV | GGNNCC | 2 cut(s) | 269, 566 |
| NmeAIII | GCCGAG | 1 cut(s) | 412 |
| NmuCI | GTSAC | 2 cut(s) | 152, 719 |
| NruI | TCGCGA | 1 cut(s) | 666 |
| PauI | GCGCGC | 1 cut(s) | 436 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 140 |
| PctI | GAATGC | 1 cut(s) | 426 |
| PkrI | GCNGC | 4 cut(s) | 51, 54, 369, 442 |
| PleI | GAGTC | 2 cut(s) | 72, 391 |
| PpsI | GAGTC | 2 cut(s) | 72, 391 |
| Psp124BI | GAGCTC | 1 cut(s) | 336 |
| PspN4I | GGNNCC | 2 cut(s) | 269, 566 |
| PspOMI | GGGCCC | 1 cut(s) | 267 |
| PspPI | GGNCC | 3 cut(s) | 267, 268, 565 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 167, 199 |
| PsuI | RGATCY | 2 cut(s) | 137, 505 |
| PteI | GCGCGC | 1 cut(s) | 436 |
| PvuII | CAGCTG | 1 cut(s) | 52 |
| RruI | TCGCGA | 1 cut(s) | 666 |
| RsaI | GTAC | 1 cut(s) | 295 |
| RsaNI | GTAC | 1 cut(s) | 294 |
| RseI | CAYNNNNRTG | 1 cut(s) | 170 |
| SacI | GAGCTC | 1 cut(s) | 336 |
| SatI | GCNGC | 4 cut(s) | 50, 53, 368, 441 |
| Sau3AI | GATC | 4 cut(s) | 137, 217, 505, 576 |
| Sau96I | GGNCC | 3 cut(s) | 267, 268, 565 |
| SchI | GAGTC | 2 cut(s) | 73, 391 |
| SduI | GDGCHC | 2 cut(s) | 271, 336 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 170 |
| Sse9I | AATT | 3 cut(s) | 181, 601, 633 |
| SsiI | CCGC | 4 cut(s) | 316, 367, 481, 491 |
| SspI | AATATT | 1 cut(s) | 698 |
| SspMI | CTAG | 2 cut(s) | 227, 477 |
| SstI | GAGCTC | 1 cut(s) | 336 |
| TaaI | ACNGT | 1 cut(s) | 741 |
| TaqI | TCGA | 5 cut(s) | 29, 87, 134, 336, 575 |
| TaqII | GACCGA | 1 cut(s) | 507 |
| TasI | AATT | 3 cut(s) | 181, 601, 633 |
| TauI | GCSGC | 1 cut(s) | 370 |
| TscAI | CASTG | 1 cut(s) | 507 |
| TseFI | GTSAC | 2 cut(s) | 152, 719 |
| TseI | GCWGC | 3 cut(s) | 49, 52, 440 |
| Tsp45I | GTSAC | 2 cut(s) | 152, 719 |
| TspDTI | ATGAA | 2 cut(s) | 194, 557 |
| TspGWI | ACGGA | 3 cut(s) | 665, 684, 706 |
| TspRI | CASTG | 1 cut(s) | 507 |
| XspI | CTAG | 2 cut(s) | 227, 477 |