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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 93 |
| AccB1I | GGYRCC | 2 cut(s) | 35, 221 |
| AccII | CGCG | 1 cut(s) | 447 |
| AccIII | TCCGGA | 1 cut(s) | 14 |
| AciI | CCGC | 5 cut(s) | 143, 171, 307, 349, 416 |
| AclWI | GGATC | 3 cut(s) | 322, 335, 384 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 14, 54, 96, 311, 312, 395 |
| AgsI | TTSAA | 1 cut(s) | 367 |
| Alw26I | GTCTC | 3 cut(s) | 44, 213, 395 |
| AlwI | GGATC | 3 cut(s) | 322, 335, 384 |
| Ama87I | CYCGRG | 3 cut(s) | 8, 89, 210 |
| Aor13HI | TCCGGA | 1 cut(s) | 14 |
| AoxI | GGCC | 3 cut(s) | 287, 386, 431 |
| ApeKI | GCWGC | 1 cut(s) | 342 |
| AspLEI | GCGC | 2 cut(s) | 414, 447 |
| AspS9I | GGNCC | 5 cut(s) | 57, 140, 273, 387, 436 |
| AsuC2I | CCSGG | 2 cut(s) | 392, 440 |
| AsuHPI | GGTGA | 1 cut(s) | 410 |
| AvaI | CYCGRG | 3 cut(s) | 8, 89, 210 |
| AvaII | GGWCC | 4 cut(s) | 57, 140, 273, 436 |
| BaeGI | GKGCMC | 1 cut(s) | 40 |
| BamHI | GGATCC | 1 cut(s) | 327 |
| BanI | GGYRCC | 2 cut(s) | 35, 221 |
| BbvI | GCAGC | 1 cut(s) | 329 |
| BccI | CCATC | 3 cut(s) | 212, 235, 353 |
| BcnI | CCSGG | 2 cut(s) | 392, 440 |
| BcoDI | GTCTC | 3 cut(s) | 44, 213, 395 |
| BfaI | CTAG | 1 cut(s) | 110 |
| BfmI | CTRYAG | 1 cut(s) | 343 |
| BfoI | RGCGCY | 1 cut(s) | 415 |
| BisI | GCNGC | 1 cut(s) | 343 |
| BlsI | GCNGC | 1 cut(s) | 344 |
| Bme1390I | CCNGG | 2 cut(s) | 392, 440 |
| Bme18I | GGWCC | 4 cut(s) | 57, 140, 273, 436 |
| BmeT110I | CYCGRG | 3 cut(s) | 8, 89, 210 |
| BmgT120I | GGNCC | 5 cut(s) | 57, 140, 273, 387, 436 |
| BmiI | GGNNCC | 7 cut(s) | 37, 59, 223, 274, 275, 329, 389 |
| BmrFI | CCNGG | 2 cut(s) | 392, 440 |
| BmsI | GCATC | 2 cut(s) | 154, 439 |
| BoxI | GACNNNNGTC | 1 cut(s) | 62 |
| BpuEI | CTTGAG | 1 cut(s) | 253 |
| BpuMI | CCSGG | 2 cut(s) | 392, 440 |
| BsaI | GGTCTC | 2 cut(s) | 213, 395 |
| BsaJI | CCNNGG | 3 cut(s) | 193, 310, 390 |
| BsaWI | WCCGGW | 2 cut(s) | 14, 334 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 9, 39 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 14, 54, 96, 311, 312, 395 |
| Bse118I | RCCGGY | 2 cut(s) | 173, 433 |
| Bse3DI | GCAATG | 1 cut(s) | 270 |
| BseAI | TCCGGA | 1 cut(s) | 14 |
| BseDI | CCNNGG | 3 cut(s) | 193, 310, 390 |
| BseGI | GGATG | 2 cut(s) | 246, 364 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 14, 54, 96, 311, 312, 395 |
| BseMI | GCAATG | 1 cut(s) | 270 |
| BseRI | GAGGAG | 1 cut(s) | 368 |
| BseSI | GKGCMC | 1 cut(s) | 40 |
| BseXI | GCAGC | 1 cut(s) | 329 |
| Bsh1236I | CGCG | 1 cut(s) | 447 |
| Bsh1285I | CGRYCG | 1 cut(s) | 335 |
| BshFI | GGCC | 3 cut(s) | 289, 388, 433 |
| BshNI | GGYRCC | 2 cut(s) | 35, 221 |
| BsiEI | CGRYCG | 1 cut(s) | 335 |
| BsiHKCI | CYCGRG | 3 cut(s) | 8, 89, 210 |
| BsiSI | CCGG | 6 cut(s) | 15, 174, 335, 392, 434, 439 |
| BslFI | GGGAC | 2 cut(s) | 151, 259 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 14, 54, 96, 311, 312, 395 |
| BsmAI | GTCTC | 3 cut(s) | 44, 213, 395 |
| BsmBI | CGTCTC | 1 cut(s) | 44 |
| BsmFI | GGGAC | 2 cut(s) | 151, 259 |
| BsmI | GAATGC | 1 cut(s) | 300 |
| BsnI | GGCC | 3 cut(s) | 289, 388, 433 |
| Bso31I | GGTCTC | 2 cut(s) | 213, 395 |
| BsoBI | CYCGRG | 3 cut(s) | 8, 89, 210 |
| Bsp1286I | GDGCHC | 1 cut(s) | 40 |
| Bsp13I | TCCGGA | 1 cut(s) | 14 |
| Bsp143I | GATC | 3 cut(s) | 254, 327, 376 |
| BspACI | CCGC | 5 cut(s) | 143, 171, 307, 349, 416 |
| BspANI | GGCC | 3 cut(s) | 289, 388, 433 |
| BspEI | TCCGGA | 1 cut(s) | 14 |
| BspFNI | CGCG | 1 cut(s) | 447 |
| BspLI | GGNNCC | 7 cut(s) | 37, 59, 223, 274, 275, 329, 389 |
| BspMAI | CTGCAG | 1 cut(s) | 347 |
| BspPI | GGATC | 3 cut(s) | 322, 335, 384 |
| BspQI | GCTCTTC | 1 cut(s) | 402 |
| BspT107I | GGYRCC | 2 cut(s) | 35, 221 |
| BspTNI | GGTCTC | 2 cut(s) | 213, 395 |
| BsrDI | GCAATG | 1 cut(s) | 270 |
| BsrFI | RCCGGY | 2 cut(s) | 173, 433 |
| BssAI | RCCGGY | 2 cut(s) | 173, 433 |
| BssECI | CCNNGG | 3 cut(s) | 193, 310, 390 |
| BssMI | GATC | 3 cut(s) | 254, 327, 376 |
| Bst6I | CTCTTC | 1 cut(s) | 402 |
| BstC8I | GCNNGC | 2 cut(s) | 347, 416 |
| BstDSI | CCRYGG | 1 cut(s) | 193 |
| BstF5I | GGATG | 2 cut(s) | 246, 364 |
| BstFNI | CGCG | 1 cut(s) | 447 |
| BstH2I | RGCGCY | 1 cut(s) | 415 |
| BstHHI | GCGC | 2 cut(s) | 414, 447 |
| BstKTI | GATC | 3 cut(s) | 257, 330, 379 |
| BstMAI | GTCTC | 3 cut(s) | 44, 213, 395 |
| BstMBI | GATC | 3 cut(s) | 254, 327, 376 |
| BstMCI | CGRYCG | 1 cut(s) | 335 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 44, 295 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 62 |
| BstSCI | CCNGG | 2 cut(s) | 390, 438 |
| BstSFI | CTRYAG | 1 cut(s) | 343 |
| BstSLI | GKGCMC | 1 cut(s) | 40 |
| BstUI | CGCG | 1 cut(s) | 447 |
| BstV1I | GCAGC | 1 cut(s) | 329 |
| BstX2I | RGATCY | 1 cut(s) | 327 |
| BstYI | RGATCY | 1 cut(s) | 327 |
| BsuRI | GGCC | 3 cut(s) | 289, 388, 433 |
| BtgI | CCRYGG | 1 cut(s) | 193 |
| BtsCI | GGATG | 2 cut(s) | 246, 364 |
| Cac8I | GCNNGC | 2 cut(s) | 347, 416 |
| CfoI | GCGC | 2 cut(s) | 414, 447 |
| Cfr10I | RCCGGY | 2 cut(s) | 173, 433 |
| Cfr13I | GGNCC | 5 cut(s) | 57, 140, 273, 387, 436 |
| CpoI | CGGWCCG | 1 cut(s) | 436 |
| CspI | CGGWCCG | 1 cut(s) | 436 |
| CviAII | CATG | 1 cut(s) | 324 |
| CviJI | RGCY | 6 cut(s) | 289, 342, 363, 371, 388, 433 |
| CviKI_1 | RGCY | 6 cut(s) | 289, 342, 363, 371, 388, 433 |
| DpnI | GATC | 3 cut(s) | 256, 329, 378 |
| DpnII | GATC | 3 cut(s) | 254, 327, 376 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 93 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 93 |
| Eam1104I | CTCTTC | 1 cut(s) | 402 |
| EarI | CTCTTC | 1 cut(s) | 402 |
| Eco31I | GGTCTC | 2 cut(s) | 213, 395 |
| Eco47I | GGWCC | 4 cut(s) | 57, 140, 273, 436 |
| Eco88I | CYCGRG | 3 cut(s) | 8, 89, 210 |
| EcoO109I | RGGNCCY | 3 cut(s) | 57, 273, 387 |
| Esp3I | CGTCTC | 1 cut(s) | 44 |
| FaeI | CATG | 1 cut(s) | 327 |
| FaiI | YATR | 2 cut(s) | 103, 325 |
| FaqI | GGGAC | 2 cut(s) | 151, 259 |
| FatI | CATG | 1 cut(s) | 323 |
| FauI | CCCGC | 4 cut(s) | 178, 314, 342, 423 |
| Fnu4HI | GCNGC | 1 cut(s) | 343 |
| FokI | GGATG | 2 cut(s) | 253, 371 |
| Fsp4HI | GCNGC | 1 cut(s) | 343 |
| FspBI | CTAG | 1 cut(s) | 110 |
| GlaI | GCGC | 2 cut(s) | 413, 446 |
| GluI | GCNGC | 1 cut(s) | 343 |
| HaeII | RGCGCY | 1 cut(s) | 415 |
| HaeIII | GGCC | 3 cut(s) | 289, 388, 433 |
| HapII | CCGG | 6 cut(s) | 15, 174, 335, 392, 434, 439 |
| HhaI | GCGC | 2 cut(s) | 414, 447 |
| Hin1II | CATG | 1 cut(s) | 327 |
| Hin6I | GCGC | 2 cut(s) | 412, 445 |
| HinP1I | GCGC | 2 cut(s) | 412, 445 |
| HinfI | GANTC | 3 cut(s) | 11, 164, 316 |
| HpaII | CCGG | 6 cut(s) | 15, 174, 335, 392, 434, 439 |
| HphI | GGTGA | 1 cut(s) | 410 |
| Hpy188I | TCNGA | 4 cut(s) | 68, 99, 163, 332 |
| Hpy188III | TCNNGA | 3 cut(s) | 15, 210, 232 |
| Hpy99I | CGWCG | 3 cut(s) | 121, 282, 285 |
| HpyAV | CCTTC | 5 cut(s) | 14, 231, 279, 332, 361 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 263, 345 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 44, 295 |
| Hsp92II | CATG | 1 cut(s) | 327 |
| HspAI | GCGC | 2 cut(s) | 412, 445 |
| KflI | GGGWCCC | 1 cut(s) | 273 |
| Kpn2I | TCCGGA | 1 cut(s) | 14 |
| Kzo9I | GATC | 3 cut(s) | 254, 327, 376 |
| LguI | GCTCTTC | 1 cut(s) | 402 |
| LmnI | GCTCC | 2 cut(s) | 250, 442 |
| LpnPI | CCDG | 7 cut(s) | 28, 187, 331, 348, 405, 447, 452 |
| Lsp1109I | GCAGC | 1 cut(s) | 329 |
| LweI | GCATC | 2 cut(s) | 154, 439 |
| MaeI | CTAG | 1 cut(s) | 110 |
| MalI | GATC | 3 cut(s) | 256, 329, 378 |
| MboI | GATC | 3 cut(s) | 254, 327, 376 |
| MboII | GAAGA | 2 cut(s) | 148, 419 |
| MflI | RGATCY | 1 cut(s) | 327 |
| MhlI | GDGCHC | 1 cut(s) | 40 |
| MlyI | GAGTC | 3 cut(s) | 20, 173, 325 |
| MmeI | TCCRAC | 5 cut(s) | 77, 228, 344, 355, 405 |
| MroI | TCCGGA | 1 cut(s) | 14 |
| MspI | CCGG | 6 cut(s) | 15, 174, 335, 392, 434, 439 |
| MspR9I | CCNGG | 2 cut(s) | 392, 440 |
| Mva1269I | GAATGC | 1 cut(s) | 300 |
| MvnI | CGCG | 1 cut(s) | 447 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 44, 295 |
| NciI | CCSGG | 2 cut(s) | 392, 440 |
| NdeII | GATC | 3 cut(s) | 254, 327, 376 |
| NlaIII | CATG | 1 cut(s) | 327 |
| NlaIV | GGNNCC | 7 cut(s) | 37, 59, 223, 274, 275, 329, 389 |
| NmeAIII | GCCGAG | 3 cut(s) | 73, 315, 335 |
| PaeR7I | CTCGAG | 1 cut(s) | 210 |
| PciSI | GCTCTTC | 1 cut(s) | 402 |
| PctI | GAATGC | 1 cut(s) | 300 |
| PfoI | TCCNGGA | 1 cut(s) | 438 |
| PkrI | GCNGC | 1 cut(s) | 344 |
| PleI | GAGTC | 3 cut(s) | 19, 172, 324 |
| PpsI | GAGTC | 3 cut(s) | 19, 172, 324 |
| PpuMI | RGGWCCY | 2 cut(s) | 57, 273 |
| PshAI | GACNNNNGTC | 1 cut(s) | 62 |
| Psp5II | RGGWCCY | 2 cut(s) | 57, 273 |
| PspN4I | GGNNCC | 7 cut(s) | 37, 59, 223, 274, 275, 329, 389 |
| PspPI | GGNCC | 5 cut(s) | 57, 140, 273, 387, 436 |
| PspPPI | RGGWCCY | 2 cut(s) | 57, 273 |
| PstI | CTGCAG | 1 cut(s) | 347 |
| PsuI | RGATCY | 1 cut(s) | 327 |
| Rsr2I | CGGWCCG | 1 cut(s) | 436 |
| RsrII | CGGWCCG | 1 cut(s) | 436 |
| SapI | GCTCTTC | 1 cut(s) | 402 |
| SatI | GCNGC | 1 cut(s) | 343 |
| Sau3AI | GATC | 3 cut(s) | 254, 327, 376 |
| Sau96I | GGNCC | 5 cut(s) | 57, 140, 273, 387, 436 |
| SchI | GAGTC | 3 cut(s) | 20, 173, 325 |
| ScrFI | CCNGG | 2 cut(s) | 392, 440 |
| SduI | GDGCHC | 1 cut(s) | 40 |
| SetI | ASST | 3 cut(s) | 25, 130, 209 |
| SfaNI | GCATC | 2 cut(s) | 154, 439 |
| SfcI | CTRYAG | 1 cut(s) | 343 |
| Sfr274I | CTCGAG | 1 cut(s) | 210 |
| SinI | GGWCC | 4 cut(s) | 57, 140, 273, 436 |
| SlaI | CTCGAG | 1 cut(s) | 210 |
| SmlI | CTYRAG | 2 cut(s) | 210, 232 |
| SmoI | CTYRAG | 2 cut(s) | 210, 232 |
| SsiI | CCGC | 5 cut(s) | 143, 171, 307, 349, 416 |
| SspMI | CTAG | 1 cut(s) | 110 |
| StyD4I | CCNGG | 2 cut(s) | 390, 438 |
| TaqI | TCGA | 3 cut(s) | 186, 211, 283 |
| TaqII | GACCGA | 1 cut(s) | 419 |
| TseI | GCWGC | 1 cut(s) | 342 |
| VpaK11BI | GGWCC | 4 cut(s) | 57, 140, 273, 436 |
| XhoI | CTCGAG | 1 cut(s) | 210 |
| XspI | CTAG | 1 cut(s) | 110 |