Rroxscaffold_5G00347420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000075
Physical Location & Seq
Forward (+)
18774213 .. 18777970
3758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00347420.1

Sequence Viewer

Length: 654 bp
ATGCGGTCCTGGAACGTTGGAGACCCTTTTGGTGAGGAGGTGTGTGACCTTGTTTCGCGGGAAGTCATCACCGTGGATAGTGCGGAGGCGGAGGTGACGAGCCAAGCCGTTGGAGACATAAGGCCGGAAATCGAGGTGCCCGACGTACGGCTCGAGTCCGGAGAAGGTATAATCGAAGTTGCCCAAGTTGCCGAGATTGGAACCCGGGATGGCGAATTGGGAGGAGTTCGAGTATCGGACACCTATGCTTGTACGGATGGGGTTGGGTCGAGGAAAAGGACGGCGTCTCAACTTCGTCTCCCGAGTCCCCCGATTGGTGTCGCCAGTGACGGAGTTGGGAATGCGGAGGGAGGTGGACCGTTTAGGGGATGTGGAGCCGGAGGCGAGGGCGAGAGGGAGGCAAAGATCGAGTGGTTGAGGAAGGAGCTAGCCGAGGAGTGGGCACGATCAAGTAGCTTCGCCGAAGAGTGCCTCCGCCCGAGTACCGCTGCCGAGACGCACCGGATAAGCTCGCCAAGGCTAGGGCGGGATGGTGCGGATAAGGCCATGGATCTCTATCTCCGGACGGATCATTTTAGAGAGAAGATGAACAAAGCCTTCTCGGATAGGGCCTTGCACTCGATTCGGGATGGTATCGCCGTCGGCTTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

23.3

Weight (kDa)

4.8

Isoelectric Point (pI)

52.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000075)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0348161 RchiOBHm_Chr1g0367481 RchiOBHm_Chr1g0368431 RchiOBHm_Chr2g0116021 RchiOBHm_Chr2g0133961 RchiOBHm_Chr4g0390151 RchiOBHm_Chr4g0402771 RchiOBHm_Chr4g0419581 RchiOBHm_Chr5g0054351 RchiOBHm_Chr6g0278891 RchiOBHm_Chr7g0201941 RchiOBHm_Chr7g0242761
rosa_laevigata RLG00000002487 RLG00000002488 RLG00000003412 RLG00000003415 RLG00000013607 RLG00000018981 RLG00000018982 RLG00000034520 RLG00000034521
rosa_multiflora Rmu_co8024510.1_g000001 Rmu_co8121892.1_g000001 Rmu_co8133046.1_g000001 Rmu_co8158032.1_g000001 Rmu_co8181114.1_g000001 Rmu_co8202532.1_g000001 Rmu_co8331471.1_g000001 Rmu_co8340209.1_g000001 Rmu_co8359899.1_g000001 Rmu_co8433657.1_g000002 Rmu_co8436419.1_g000002 Rmu_co8458211.1_g000002 Rmu_co8458731.1_g000002 Rmu_co8466361.1_g000001 Rmu_co8474565.1_g000001 Rmu_co8474565.1_g000002 Rmu_co8482201.1_g000001 Rmu_co8491967.1_g000003 Rmu_co8498095.1_g000001 Rmu_co8513217.1_g000002 Rmu_co8518257.1_g000001 Rmu_co8520425.1_g000003 Rmu_co8521283.1_g000003 Rmu_sc0000029.1_g000029 Rmu_sc0000082.1_g000019 Rmu_sc0000147.1_g000107 Rmu_sc0000212.1_g000005 Rmu_sc0000247.1_g000030 Rmu_sc0000367.1_g000175 Rmu_sc0000433.1_g000035 Rmu_sc0000538.1_g000038 Rmu_sc0000550.1_g000010 Rmu_sc0000635.1_g000007 Rmu_sc0000650.1_g000012 Rmu_sc0000652.1_g000009 Rmu_sc0000652.1_g000010 Rmu_sc0000742.1_g000010 Rmu_sc0000750.1_g000007 Rmu_sc0000750.1_g000008 Rmu_sc0000772.1_g000018 Rmu_sc0000830.1_g000026 Rmu_sc0000859.1_g000006 Rmu_sc0001190.1_g000039 Rmu_sc0001190.1_g000050 Rmu_sc0001190.1_g000051 Rmu_sc0001205.1_g000008 Rmu_sc0001294.1_g000025 Rmu_sc0001366.1_g000010 Rmu_sc0001373.1_g000036 Rmu_sc0001423.1_g000046 Rmu_sc0001788.1_g000014 Rmu_sc0001801.1_g000016 Rmu_sc0001849.1_g000032 Rmu_sc0001967.1_g000002 Rmu_sc0002082.1_g000066 Rmu_sc0002250.1_g000013 Rmu_sc0002322.1_g000039 Rmu_sc0002371.1_g000002 Rmu_sc0002522.1_g000036 Rmu_sc0002532.1_g000048 Rmu_sc0002669.1_g000065 Rmu_sc0002669.1_g000067 Rmu_sc0002669.1_g000069 Rmu_sc0002834.1_g000007 Rmu_sc0003226.1_g000070 Rmu_sc0003260.1_g000018 Rmu_sc0003313.1_g000007 Rmu_sc0003441.1_g000018 Rmu_sc0003490.1_g000008 Rmu_sc0003705.1_g000011 Rmu_sc0003737.1_g000013 Rmu_sc0003748.1_g000020 Rmu_sc0003910.1_g000015 Rmu_sc0003919.1_g000029 Rmu_sc0003919.1_g000031 Rmu_sc0004037.1_g000012 Rmu_sc0004099.1_g000003 Rmu_sc0004122.1_g000013 Rmu_sc0004402.1_g000013 Rmu_sc0004646.1_g000035 Rmu_sc0004688.1_g000024 Rmu_sc0004823.1_g000046 Rmu_sc0004869.1_g000003 Rmu_sc0004869.1_g000004 Rmu_sc0005132.1_g000035 Rmu_sc0005190.1_g000001 Rmu_sc0005229.1_g000005 Rmu_sc0005229.1_g000023 Rmu_sc0005363.1_g000034 Rmu_sc0005537.1_g000006 Rmu_sc0005657.1_g000024 Rmu_sc0005856.1_g000011 Rmu_sc0005856.1_g000012 Rmu_sc0005953.1_g000007 Rmu_sc0005971.1_g000015 Rmu_sc0006287.1_g000004 Rmu_sc0006315.1_g000014 Rmu_sc0006518.1_g000003 Rmu_sc0006695.1_g000066 Rmu_sc0006803.1_g000056 Rmu_sc0006822.1_g000002 Rmu_sc0006926.1_g000011 Rmu_sc0007560.1_g000008 Rmu_sc0007582.1_g000005 Rmu_sc0007618.1_g000025 Rmu_sc0007647.1_g000004 Rmu_sc0007656.1_g000013 Rmu_sc0007877.1_g000011 Rmu_sc0008528.1_g000005 Rmu_sc0008528.1_g000006 Rmu_sc0008749.1_g000004 Rmu_sc0008989.1_g000003 Rmu_sc0009120.1_g000010 Rmu_sc0009663.1_g000009 Rmu_sc0010035.1_g000001 Rmu_sc0010160.1_g000010 Rmu_sc0010160.1_g000011 Rmu_sc0010953.1_g000004 Rmu_sc0011008.1_g000006 Rmu_sc0011452.1_g000009 Rmu_sc0012746.1_g000014 Rmu_sc0013612.1_g000017 Rmu_sc0013951.1_g000011 Rmu_sc0014162.1_g000009 Rmu_sc0014162.1_g000010 Rmu_sc0016149.1_g000003 Rmu_sc0016418.1_g000008 Rmu_sc0016418.1_g000009 Rmu_sc0017353.1_g000001 Rmu_sc0017353.1_g000002 Rmu_sc0018537.1_g000012 Rmu_sc0019739.1_g000003 Rmu_sc0019739.1_g000004 Rmu_sc0020186.1_g000016 Rmu_sc0021611.1_g000001 Rmu_sc0022755.1_g000003 Rmu_sc0024226.1_g000006 Rmu_sc0025769.1_g000004 Rmu_sc0025769.1_g000005 Rmu_sc0030235.1_g000004 Rmu_sc0035508.1_g000007 Rmu_sc0036413.1_g000001 Rmu_sc0037646.1_g000001 Rmu_sc0037646.1_g000002 Rmu_sc0037647.1_g000001 Rmu_sc0037647.1_g000002 Rmu_sc0037678.1_g000001 Rmu_ssc0000072.1_g000010 Rmu_ssc0000116.1_g000041 Rmu_ssc0000127.1_g000018 Rmu_ssc0000175.1_g000018 Rmu_ssc0000175.1_g000019 Rmu_ssc0000175.1_g000020 Rmu_ssc0000197.1_g000037 Rmu_ssc0000213.1_g000051 Rmu_ssc0000359.1_g000008 Rmu_ssc0000392.1_g000019
rosa_roxburghii Rroxscaffold_154G00447930 Rroxscaffold_1G00000570 Rroxscaffold_1G00009890 Rroxscaffold_1G00012210 Rroxscaffold_1G00012960 Rroxscaffold_1G00014650 Rroxscaffold_1G00014660 Rroxscaffold_1G00014670 Rroxscaffold_1G00022880 Rroxscaffold_1G00024640 Rroxscaffold_1G00024650 Rroxscaffold_1G00025670 Rroxscaffold_1G00025680 Rroxscaffold_1G00025690 Rroxscaffold_1G00030660 Rroxscaffold_1G00031340 Rroxscaffold_1G00031350 Rroxscaffold_2G00103100 Rroxscaffold_2G00103120 Rroxscaffold_2G00107390 Rroxscaffold_2G00108940 Rroxscaffold_2G00110610 Rroxscaffold_2G00110620 Rroxscaffold_2G00110710 Rroxscaffold_2G00110720 Rroxscaffold_2G00110730 Rroxscaffold_2G00111170 Rroxscaffold_2G00111510 Rroxscaffold_2G00114750 Rroxscaffold_2G00114760 Rroxscaffold_2G00114770 Rroxscaffold_2G00116270 Rroxscaffold_2G00121090 Rroxscaffold_2G00129350 Rroxscaffold_2G00130410 Rroxscaffold_2G00155930 Rroxscaffold_3G00218120 Rroxscaffold_3G00218330 Rroxscaffold_3G00218340 Rroxscaffold_3G00227530 Rroxscaffold_3G00233140 Rroxscaffold_3G00236800 Rroxscaffold_3G00242370 Rroxscaffold_3G00242380 Rroxscaffold_3G00242410 Rroxscaffold_3G00248720 Rroxscaffold_3G00248730 Rroxscaffold_3G00248770 Rroxscaffold_3G00258550 Rroxscaffold_3G00258560 Rroxscaffold_4G00287000 Rroxscaffold_4G00289070 Rroxscaffold_4G00289080 Rroxscaffold_4G00289100 Rroxscaffold_4G00295600 Rroxscaffold_4G00298090 Rroxscaffold_4G00308330 Rroxscaffold_4G00310570 Rroxscaffold_4G00310580 Rroxscaffold_4G00310620 Rroxscaffold_4G00315750 Rroxscaffold_4G00319620 Rroxscaffold_4G00319630 Rroxscaffold_4G00328870 Rroxscaffold_4G00328880 Rroxscaffold_4G00332120 Rroxscaffold_4G00332310 Rroxscaffold_5G00332660 Rroxscaffold_5G00332710 Rroxscaffold_5G00332970 Rroxscaffold_5G00344920 Rroxscaffold_5G00345540 Rroxscaffold_5G00346760 Rroxscaffold_5G00346770 Rroxscaffold_5G00347420 Rroxscaffold_5G00350360 Rroxscaffold_5G00350370 Rroxscaffold_5G00354490 Rroxscaffold_5G00370760 Rroxscaffold_5G00370770 Rroxscaffold_5G00374010 Rroxscaffold_5G00374020 Rroxscaffold_5G00374490 Rroxscaffold_5G00374510 Rroxscaffold_5G00387640 Rroxscaffold_5G00387650 Rroxscaffold_6G00387870 Rroxscaffold_6G00388560 Rroxscaffold_6G00388570 Rroxscaffold_6G00388670 Rroxscaffold_6G00388680 Rroxscaffold_6G00391960 Rroxscaffold_6G00393010 Rroxscaffold_6G00395010 Rroxscaffold_6G00395020 Rroxscaffold_6G00397990 Rroxscaffold_6G00401460 Rroxscaffold_6G00407850 Rroxscaffold_6G00423090 Rroxscaffold_6G00423100 Rroxscaffold_6G00423110 Rroxscaffold_7G00165960 Rroxscaffold_7G00165970 Rroxscaffold_7G00176270 Rroxscaffold_7G00176280 Rroxscaffold_7G00176600 Rroxscaffold_7G00176610 Rroxscaffold_7G00176620 Rroxscaffold_7G00176660 Rroxscaffold_7G00195710
rosa_rugosa Rorug03G0209000 Rorug05G0468000 Rorug05G0468000
rosa_samantha Rh3AG250900 Rh3AG257700 Rh3BG294700 Rh3CG284700 Rh3CG284800 Rh3DG280200 Rh3DG280300 Rh3DG280500 Rh3DG287600 Rh3DG287700 Rh4BG408500 Rh4DG402700 Rh6CG194400 Rh6CG194600 Rh6DG186400 Rh6DG186500 Rh7AG218100 Rh7AG278800 Rh7BG224200 Rh7CG231300 Rh7CG231400 Rh7DG225400
rosa_wichuraiana Rw3G022640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 136
AccII CGCG 1 cut(s) 58
AccIII TCCGGA 2 cut(s) 158, 561
AciI CCGC 9 cut(s) 4, 58, 83, 89, 344, 475, 486, 526, 536
AclI AACGTT 1 cut(s) 15
AclWI GGATC 2 cut(s) 558, 576
AcyI GRCGYC 1 cut(s) 284
AfaI GTAC 3 cut(s) 147, 253, 484
AfiI CCNNNNNNNGG 5 cut(s) 147, 314, 365, 438, 521
AjnI CCWGG 1 cut(s) 8
AluBI AGCT 3 cut(s) 427, 456, 510
AluI AGCT 3 cut(s) 427, 456, 510
Alw26I GTCTC 5 cut(s) 15, 108, 291, 302, 488
AlwI GGATC 2 cut(s) 558, 576
Ama87I CYCGRG 4 cut(s) 152, 204, 301, 478
Aor13HI TCCGGA 2 cut(s) 158, 561
AoxI GGCC 3 cut(s) 122, 543, 609
ApeKI GCWGC 1 cut(s) 488
AspS9I GGNCC 3 cut(s) 6, 356, 609
AsuC2I CCSGG 2 cut(s) 205, 206
AsuHPI GGTGA 3 cut(s) 44, 61, 106
AsuNHI GCTAGC 1 cut(s) 427
AvaI CYCGRG 4 cut(s) 152, 204, 301, 478
AvaII GGWCC 2 cut(s) 6, 356
BaeGI GKGCMC 2 cut(s) 141, 445
BanI GGYRCC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 475
BccI CCATC 4 cut(s) 203, 251, 524, 623
BceAI ACGGC 4 cut(s) 92, 164, 297, 623
BcgI CGANNNNNNTGC 2 cut(s) 605, 639
BciT130I CCWGG 1 cut(s) 10
BcnI CCSGG 2 cut(s) 205, 206
BcoDI GTCTC 5 cut(s) 15, 108, 291, 302, 488
BfaI CTAG 2 cut(s) 428, 521
BisI GCNGC 1 cut(s) 489
BlsI GCNGC 1 cut(s) 490
Bme1390I CCNGG 3 cut(s) 10, 205, 206
Bme18I GGWCC 2 cut(s) 6, 356
BmeT110I CYCGRG 4 cut(s) 152, 204, 301, 478
BmgT120I GGNCC 3 cut(s) 6, 356, 609
BmiI GGNNCC 3 cut(s) 138, 202, 376
BmrFI CCNGG 3 cut(s) 10, 205, 206
BmtI GCTAGC 1 cut(s) 431
BpuMI CCSGG 2 cut(s) 205, 206
BsaBI GATNNNNATC 1 cut(s) 555
BsaHI GRCGYC 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 5 cut(s) 72, 204, 432, 515, 546
BsaWI WCCGGW 3 cut(s) 158, 501, 561
BsaXI ACNNNNNCTCC 4 cut(s) 216, 246, 282, 312
Bsc4I CCNNNNNNNGG 5 cut(s) 147, 314, 365, 438, 521
Bse1I ACTGG 1 cut(s) 324
Bse8I GATNNNNATC 1 cut(s) 555
BseAI TCCGGA 2 cut(s) 158, 561
BseBI CCWGG 1 cut(s) 10
BseDI CCNNGG 5 cut(s) 72, 204, 432, 515, 546
BseGI GGATG 5 cut(s) 214, 262, 374, 535, 634
BseJI GATNNNNATC 1 cut(s) 555
BseLI CCNNNNNNNGG 5 cut(s) 147, 314, 365, 438, 521
BseNI ACTGG 1 cut(s) 324
BseRI GAGGAG 3 cut(s) 50, 237, 449
BseSI GKGCMC 2 cut(s) 141, 445
BseXI GCAGC 1 cut(s) 475
Bsh1236I CGCG 1 cut(s) 58
BshFI GGCC 3 cut(s) 124, 545, 611
BshNI GGYRCC 1 cut(s) 136
BsiHKCI CYCGRG 4 cut(s) 152, 204, 301, 478
BsiSI CCGG 6 cut(s) 125, 159, 205, 378, 502, 562
BsiWI CGTACG 1 cut(s) 145
BslFI GGGAC 1 cut(s) 291
BslI CCNNNNNNNGG 5 cut(s) 147, 314, 365, 438, 521
BsmAI GTCTC 5 cut(s) 15, 108, 291, 302, 488
BsmBI CGTCTC 3 cut(s) 291, 302, 488
BsmFI GGGAC 1 cut(s) 291
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 3 cut(s) 124, 545, 611
Bso31I GGTCTC 1 cut(s) 15
BsoBI CYCGRG 4 cut(s) 152, 204, 301, 478
Bsp1286I GDGCHC 2 cut(s) 141, 445
Bsp13I TCCGGA 2 cut(s) 158, 561
Bsp143I GATC 4 cut(s) 405, 446, 550, 568
Bsp19I CCATGG 1 cut(s) 546
BspACI CCGC 9 cut(s) 4, 58, 83, 89, 344, 475, 486, 526, 536
BspANI GGCC 3 cut(s) 124, 545, 611
BspEI TCCGGA 2 cut(s) 158, 561
BspFNI CGCG 1 cut(s) 58
BspLI GGNNCC 3 cut(s) 138, 202, 376
BspOI GCTAGC 1 cut(s) 431
BspPI GGATC 2 cut(s) 558, 576
BspT107I GGYRCC 1 cut(s) 136
BspTNI GGTCTC 1 cut(s) 15
BsrI ACTGG 1 cut(s) 324
BssECI CCNNGG 5 cut(s) 72, 204, 432, 515, 546
BssMI GATC 4 cut(s) 405, 446, 550, 568
BssNI GRCGYC 1 cut(s) 284
BssT1I CCWWGG 2 cut(s) 515, 546
Bst2UI CCWGG 1 cut(s) 10
Bst4CI ACNGT 2 cut(s) 73, 360
Bst6I CTCTTC 1 cut(s) 459
BstACI GRCGYC 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 429, 512
BstDEI CTNAG 1 cut(s) 646
BstDSI CCRYGG 2 cut(s) 72, 546
BstF5I GGATG 5 cut(s) 214, 262, 374, 535, 634
BstFNI CGCG 1 cut(s) 58
BstKTI GATC 4 cut(s) 408, 449, 553, 571
BstMAI GTCTC 5 cut(s) 15, 108, 291, 302, 488
BstMBI GATC 4 cut(s) 405, 446, 550, 568
BstMWI GCNNNNNNNGC 2 cut(s) 188, 542
BstNI CCWGG 1 cut(s) 10
BstSCI CCNGG 3 cut(s) 8, 203, 204
BstSLI GKGCMC 2 cut(s) 141, 445
BstUI CGCG 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 475
BstX2I RGATCY 1 cut(s) 550
BstXI CCANNNNNNTGG 1 cut(s) 110
BstYI RGATCY 1 cut(s) 550
BsuRI GGCC 3 cut(s) 124, 545, 611
BtgI CCRYGG 2 cut(s) 72, 546
BtsCI GGATG 5 cut(s) 214, 262, 374, 535, 634
BtsIMutI CAGTG 1 cut(s) 331
Cac8I GCNNGC 2 cut(s) 429, 512
Cfr13I GGNCC 3 cut(s) 6, 356, 609
Cfr9I CCCGGG 1 cut(s) 204
CseI GACGC 2 cut(s) 273, 505
Csp6I GTAC 3 cut(s) 146, 252, 483
CviAII CATG 1 cut(s) 547
CviQI GTAC 3 cut(s) 146, 252, 483
DdeI CTNAG 1 cut(s) 646
DpnI GATC 4 cut(s) 407, 448, 552, 570
DpnII GATC 4 cut(s) 405, 446, 550, 568
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
EciI GGCGGA 2 cut(s) 104, 464
Eco130I CCWWGG 2 cut(s) 515, 546
Eco31I GGTCTC 1 cut(s) 15
Eco47I GGWCC 2 cut(s) 6, 356
Eco88I CYCGRG 4 cut(s) 152, 204, 301, 478
EcoO109I RGGNCCY 1 cut(s) 609
EcoRII CCWGG 1 cut(s) 8
EcoT14I CCWWGG 2 cut(s) 515, 546
ErhI CCWWGG 2 cut(s) 515, 546
Esp3I CGTCTC 3 cut(s) 291, 302, 488
FaeI CATG 1 cut(s) 550
FaiI YATR 4 cut(s) 119, 170, 246, 548
FaqI GGGAC 1 cut(s) 291
FatI CATG 1 cut(s) 546
FauI CCCGC 2 cut(s) 51, 519
Fnu4HI GCNGC 1 cut(s) 489
FokI GGATG 5 cut(s) 221, 269, 381, 542, 641
Fsp4HI GCNGC 1 cut(s) 489
FspBI CTAG 2 cut(s) 428, 521
GluI GCNGC 1 cut(s) 489
HaeIII GGCC 3 cut(s) 124, 545, 611
HapII CCGG 6 cut(s) 125, 159, 205, 378, 502, 562
HgaI GACGC 2 cut(s) 273, 505
Hin1I GRCGYC 1 cut(s) 284
Hin1II CATG 1 cut(s) 550
HinfI GANTC 3 cut(s) 155, 304, 622
HpaII CCGG 6 cut(s) 125, 159, 205, 378, 502, 562
HphI GGTGA 3 cut(s) 44, 61, 106
Hpy166II GTNNAC 1 cut(s) 356
Hpy188I TCNGA 2 cut(s) 238, 604
Hpy188III TCNNGA 4 cut(s) 159, 301, 562, 626
Hpy8I GTNNAC 1 cut(s) 356
Hpy99I CGWCG 2 cut(s) 146, 644
HpyAV CCTTC 3 cut(s) 158, 415, 607
HpyCH4III ACNGT 2 cut(s) 73, 360
HpyCH4IV ACGT 2 cut(s) 15, 144
HpyCH4V TGCA 1 cut(s) 616
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 542
HpyF3I CTNAG 1 cut(s) 646
HpySE526I ACGT 2 cut(s) 15, 144
Hsp92I GRCGYC 1 cut(s) 284
Hsp92II CATG 1 cut(s) 550
Kpn2I TCCGGA 2 cut(s) 158, 561
Kzo9I GATC 4 cut(s) 405, 446, 550, 568
LmnI GCTCC 2 cut(s) 374, 424
LpnPI CCDG 8 cut(s) 22, 138, 172, 218, 337, 391, 515, 575
Lsp1109I GCAGC 1 cut(s) 475
MaeI CTAG 2 cut(s) 428, 521
MaeII ACGT 2 cut(s) 15, 144
MaeIII GTNAC 3 cut(s) 44, 94, 326
MalI GATC 4 cut(s) 407, 448, 552, 570
MboI GATC 4 cut(s) 405, 446, 550, 568
MboII GAAGA 2 cut(s) 476, 595
MflI RGATCY 1 cut(s) 550
MhlI GDGCHC 2 cut(s) 141, 445
MluCI AATT 1 cut(s) 215
MlyI GAGTC 2 cut(s) 164, 313
MmeI TCCRAC 1 cut(s) 91
MroI TCCGGA 2 cut(s) 158, 561
MslI CAYNNNNRTG 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 6 cut(s) 125, 159, 205, 378, 502, 562
MspR9I CCNGG 3 cut(s) 10, 205, 206
Mva1269I GAATGC 1 cut(s) 346
MvaI CCWGG 1 cut(s) 10
MvnI CGCG 1 cut(s) 58
MwoI GCNNNNNNNGC 2 cut(s) 188, 542
NciI CCSGG 2 cut(s) 205, 206
NcoI CCATGG 1 cut(s) 546
NdeII GATC 4 cut(s) 405, 446, 550, 568
NheI GCTAGC 1 cut(s) 427
NlaIII CATG 1 cut(s) 550
NlaIV GGNNCC 3 cut(s) 138, 202, 376
NmeAIII GCCGAG 3 cut(s) 217, 457, 517
NmuCI GTSAC 3 cut(s) 44, 94, 326
PaeR7I CTCGAG 1 cut(s) 152
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 150
PctI GAATGC 1 cut(s) 346
PfeI GAWTC 1 cut(s) 622
Pfl23II CGTACG 1 cut(s) 145
PflFI GACNNNGTC 1 cut(s) 283
PfoI TCCNGGA 1 cut(s) 8
PkrI GCNGC 1 cut(s) 490
PleI GAGTC 2 cut(s) 163, 312
PpsI GAGTC 2 cut(s) 163, 312
Psp1406I AACGTT 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspLI CGTACG 1 cut(s) 145
PspN4I GGNNCC 3 cut(s) 138, 202, 376
PspPI GGNCC 3 cut(s) 6, 356, 609
PspXI VCTCGAGB 1 cut(s) 152
PsuI RGATCY 1 cut(s) 550
PsyI GACNNNGTC 1 cut(s) 283
RsaI GTAC 3 cut(s) 147, 253, 484
RsaNI GTAC 3 cut(s) 146, 252, 483
RseI CAYNNNNRTG 1 cut(s) 71
SatI GCNGC 1 cut(s) 489
Sau3AI GATC 4 cut(s) 405, 446, 550, 568
Sau96I GGNCC 3 cut(s) 6, 356, 609
SchI GAGTC 2 cut(s) 164, 313
ScrFI CCNGG 3 cut(s) 10, 205, 206
SduI GDGCHC 2 cut(s) 141, 445
Sfr274I CTCGAG 1 cut(s) 152
SinI GGWCC 2 cut(s) 6, 356
SlaI CTCGAG 1 cut(s) 152
SmaI CCCGGG 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 1 cut(s) 215
SsiI CCGC 9 cut(s) 4, 58, 83, 89, 344, 475, 486, 526, 536
SspMI CTAG 2 cut(s) 428, 521
StyD4I CCNGG 3 cut(s) 8, 203, 204
StyI CCWWGG 2 cut(s) 515, 546
TaaI ACNGT 2 cut(s) 73, 360
TaiI ACGT 2 cut(s) 18, 147
TaqI TCGA 7 cut(s) 132, 153, 174, 229, 269, 408, 620
TasI AATT 1 cut(s) 215
TfiI GAWTC 1 cut(s) 622
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 3 cut(s) 44, 94, 326
TseI GCWGC 1 cut(s) 488
Tsp45I GTSAC 3 cut(s) 44, 94, 326
TspDTI ATGAA 1 cut(s) 602
TspGWI ACGGA 3 cut(s) 269, 345, 581
TspMI CCCGGG 1 cut(s) 204
TspRI CASTG 1 cut(s) 331
Tth111I GACNNNGTC 1 cut(s) 283
VpaK11BI GGWCC 2 cut(s) 6, 356
XhoI CTCGAG 1 cut(s) 152
XmaI CCCGGG 1 cut(s) 204
XspI CTAG 2 cut(s) 428, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.