Rroxscaffold_1G00014650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000075
Physical Location & Seq
Reverse (-)
18229677 .. 18232547
2871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014650.1

Sequence Viewer

Length: 1452 bp
ATGGCACGGGAACATCGTGGTCGCGGTAGGCGAGAGGGTTCTTCTCGCCGTGGTAGTGGCGAGGGTTTCTCCCGTGGAGGTGGTGAAGGAGCTTCTCGTGAAGGTGGCGAGAATTCTTTGCATGGGGTCCCGAGTAGGGTCGAGCATCTCGCGGATGTTATGGGGCCCGAGGTTCCCGAGACGGGGAATGTCGAGGTGTTGGAGGTTCGTCATTTGCCAAGTGGGCGGCTGTTCCTTAGCGATATGCCCATTGACCAACCGGATGCGTATTCGACGAAGGCCGGGAACAACGGGTGTGTGAATTTTAGGGCACGCGGCCACACAATTATTGAGGACCTTCCGTCTAACATTTACTCTAGTCGGGAGGATGTGCTTTGCACGGTTGGAGGCATTTGCGTAACCTCGGACATGGTGCATCGGGCTTCCACCCATTTCCAACCTATCCGTGAGTATCGTGATTGCGTTTTTGGTAAATTTTGCCATTGGTGTGTGCTAACGAGCGTGTCTTTGGATCGTAGTGAGGCGGGTGGCTATCCCGACCATGCTAAAGCGAAGCGTGTTGTGAGGGTTTTAGGCGAGTTCCCAAAGGGGAAGATGGGTTTCTATCGCCTATGTTGGCTTTCGATATATGAGAGGTTTGAGCCGGGGCGCTATCCGGCGGATATGCCTAGTGAGGATGCTAGCAAGAGTGATGCTCGTATGCCAAGCTGCCCGACGAGGTGTACCGAGGTTTCTCGACGGCGTGTTGGAGTACCTCAACAAGCAAGCCGAGGAGCAGCAGTGTGCCGAGGGACATATGGCTCGGGGCCATCTAAGGCGGTGGTGTCGAGGTGGGGGCTCGTTCTCGGGAGCGGGAGGATGAGGCGAGTTAGCATTCCCAAGTACTCGCCGGGGAGCTCCGGTCCCCAAAGATTCAGAAAATGCAAGGCGGTCCCCCGAGTCTTGGCGGGAGGGATGGAATGTGGTGCCGTGAATGAGCAATCGAGCCGAGGGTTGAAGTGGAGATCTCCATCGAGGAACTATTTGAAGAAGTTGAATAGCGCTAGAGCGATATCGCGGGAGATTATTACTATTGACAACGGGGAGGCCGAGGTTACTAGCCGTGCCGTTGGTGGTGCAATTCCGGCCGAGGTTACTAGCCGGAGCTCAACAGAGGACCCGGTGTCGGCGTCGGCCGAGGAGCATTTGCAAGAGTTGGAGAGGCGGGTCTGGGAGCGCGATGCCGAGTTGGAGCTTCGCAGCGTGGCCTTGAAAAGTTTGGCTCCTTATCCCGATCGTGTTGTGGATTTAAAGGGGCAAGTTGGTACTTTGCGAGGAGAAGTTGATCGCTTGAGGGTTGTTGAGCGCCAAGTCGGCAAGAGGATGCGAGCTGGAGCGATTGAGGAAAAACTCGGGCTAGCACCTTTGTCGATGACCGTATTCGCTTGCGGCCGCCGCCAAGATCCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

483

Amino Acids

52.94

Weight (kDa)

9.46

Isoelectric Point (pI)

54.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000075)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0348161 RchiOBHm_Chr1g0367481 RchiOBHm_Chr1g0368431 RchiOBHm_Chr2g0116021 RchiOBHm_Chr2g0133961 RchiOBHm_Chr4g0390151 RchiOBHm_Chr4g0402771 RchiOBHm_Chr4g0419581 RchiOBHm_Chr5g0054351 RchiOBHm_Chr6g0278891 RchiOBHm_Chr7g0201941 RchiOBHm_Chr7g0242761
rosa_laevigata RLG00000002487 RLG00000002488 RLG00000003412 RLG00000003415 RLG00000013607 RLG00000018981 RLG00000018982 RLG00000034520 RLG00000034521
rosa_multiflora Rmu_co8024510.1_g000001 Rmu_co8121892.1_g000001 Rmu_co8133046.1_g000001 Rmu_co8158032.1_g000001 Rmu_co8181114.1_g000001 Rmu_co8202532.1_g000001 Rmu_co8331471.1_g000001 Rmu_co8340209.1_g000001 Rmu_co8359899.1_g000001 Rmu_co8433657.1_g000002 Rmu_co8436419.1_g000002 Rmu_co8458211.1_g000002 Rmu_co8458731.1_g000002 Rmu_co8466361.1_g000001 Rmu_co8474565.1_g000001 Rmu_co8474565.1_g000002 Rmu_co8482201.1_g000001 Rmu_co8491967.1_g000003 Rmu_co8498095.1_g000001 Rmu_co8513217.1_g000002 Rmu_co8518257.1_g000001 Rmu_co8520425.1_g000003 Rmu_co8521283.1_g000003 Rmu_sc0000029.1_g000029 Rmu_sc0000082.1_g000019 Rmu_sc0000147.1_g000107 Rmu_sc0000212.1_g000005 Rmu_sc0000247.1_g000030 Rmu_sc0000367.1_g000175 Rmu_sc0000433.1_g000035 Rmu_sc0000538.1_g000038 Rmu_sc0000550.1_g000010 Rmu_sc0000635.1_g000007 Rmu_sc0000650.1_g000012 Rmu_sc0000652.1_g000009 Rmu_sc0000652.1_g000010 Rmu_sc0000742.1_g000010 Rmu_sc0000750.1_g000007 Rmu_sc0000750.1_g000008 Rmu_sc0000772.1_g000018 Rmu_sc0000830.1_g000026 Rmu_sc0000859.1_g000006 Rmu_sc0001190.1_g000039 Rmu_sc0001190.1_g000050 Rmu_sc0001190.1_g000051 Rmu_sc0001205.1_g000008 Rmu_sc0001294.1_g000025 Rmu_sc0001366.1_g000010 Rmu_sc0001373.1_g000036 Rmu_sc0001423.1_g000046 Rmu_sc0001788.1_g000014 Rmu_sc0001801.1_g000016 Rmu_sc0001849.1_g000032 Rmu_sc0001967.1_g000002 Rmu_sc0002082.1_g000066 Rmu_sc0002250.1_g000013 Rmu_sc0002322.1_g000039 Rmu_sc0002371.1_g000002 Rmu_sc0002522.1_g000036 Rmu_sc0002532.1_g000048 Rmu_sc0002669.1_g000065 Rmu_sc0002669.1_g000067 Rmu_sc0002669.1_g000069 Rmu_sc0002834.1_g000007 Rmu_sc0003226.1_g000070 Rmu_sc0003260.1_g000018 Rmu_sc0003313.1_g000007 Rmu_sc0003441.1_g000018 Rmu_sc0003490.1_g000008 Rmu_sc0003705.1_g000011 Rmu_sc0003737.1_g000013 Rmu_sc0003748.1_g000020 Rmu_sc0003910.1_g000015 Rmu_sc0003919.1_g000029 Rmu_sc0003919.1_g000031 Rmu_sc0004037.1_g000012 Rmu_sc0004099.1_g000003 Rmu_sc0004122.1_g000013 Rmu_sc0004402.1_g000013 Rmu_sc0004646.1_g000035 Rmu_sc0004688.1_g000024 Rmu_sc0004823.1_g000046 Rmu_sc0004869.1_g000003 Rmu_sc0004869.1_g000004 Rmu_sc0005132.1_g000035 Rmu_sc0005190.1_g000001 Rmu_sc0005229.1_g000005 Rmu_sc0005229.1_g000023 Rmu_sc0005363.1_g000034 Rmu_sc0005537.1_g000006 Rmu_sc0005657.1_g000024 Rmu_sc0005856.1_g000011 Rmu_sc0005856.1_g000012 Rmu_sc0005953.1_g000007 Rmu_sc0005971.1_g000015 Rmu_sc0006287.1_g000004 Rmu_sc0006315.1_g000014 Rmu_sc0006518.1_g000003 Rmu_sc0006695.1_g000066 Rmu_sc0006803.1_g000056 Rmu_sc0006822.1_g000002 Rmu_sc0006926.1_g000011 Rmu_sc0007560.1_g000008 Rmu_sc0007582.1_g000005 Rmu_sc0007618.1_g000025 Rmu_sc0007647.1_g000004 Rmu_sc0007656.1_g000013 Rmu_sc0007877.1_g000011 Rmu_sc0008528.1_g000005 Rmu_sc0008528.1_g000006 Rmu_sc0008749.1_g000004 Rmu_sc0008989.1_g000003 Rmu_sc0009120.1_g000010 Rmu_sc0009663.1_g000009 Rmu_sc0010035.1_g000001 Rmu_sc0010160.1_g000010 Rmu_sc0010160.1_g000011 Rmu_sc0010953.1_g000004 Rmu_sc0011008.1_g000006 Rmu_sc0011452.1_g000009 Rmu_sc0012746.1_g000014 Rmu_sc0013612.1_g000017 Rmu_sc0013951.1_g000011 Rmu_sc0014162.1_g000009 Rmu_sc0014162.1_g000010 Rmu_sc0016149.1_g000003 Rmu_sc0016418.1_g000008 Rmu_sc0016418.1_g000009 Rmu_sc0017353.1_g000001 Rmu_sc0017353.1_g000002 Rmu_sc0018537.1_g000012 Rmu_sc0019739.1_g000003 Rmu_sc0019739.1_g000004 Rmu_sc0020186.1_g000016 Rmu_sc0021611.1_g000001 Rmu_sc0022755.1_g000003 Rmu_sc0024226.1_g000006 Rmu_sc0025769.1_g000004 Rmu_sc0025769.1_g000005 Rmu_sc0030235.1_g000004 Rmu_sc0035508.1_g000007 Rmu_sc0036413.1_g000001 Rmu_sc0037646.1_g000001 Rmu_sc0037646.1_g000002 Rmu_sc0037647.1_g000001 Rmu_sc0037647.1_g000002 Rmu_sc0037678.1_g000001 Rmu_ssc0000072.1_g000010 Rmu_ssc0000116.1_g000041 Rmu_ssc0000127.1_g000018 Rmu_ssc0000175.1_g000018 Rmu_ssc0000175.1_g000019 Rmu_ssc0000175.1_g000020 Rmu_ssc0000197.1_g000037 Rmu_ssc0000213.1_g000051 Rmu_ssc0000359.1_g000008 Rmu_ssc0000392.1_g000019
rosa_roxburghii Rroxscaffold_154G00447930 Rroxscaffold_1G00000570 Rroxscaffold_1G00009890 Rroxscaffold_1G00012210 Rroxscaffold_1G00012960 Rroxscaffold_1G00014650 Rroxscaffold_1G00014660 Rroxscaffold_1G00014670 Rroxscaffold_1G00022880 Rroxscaffold_1G00024640 Rroxscaffold_1G00024650 Rroxscaffold_1G00025670 Rroxscaffold_1G00025680 Rroxscaffold_1G00025690 Rroxscaffold_1G00030660 Rroxscaffold_1G00031340 Rroxscaffold_1G00031350 Rroxscaffold_2G00103100 Rroxscaffold_2G00103120 Rroxscaffold_2G00107390 Rroxscaffold_2G00108940 Rroxscaffold_2G00110610 Rroxscaffold_2G00110620 Rroxscaffold_2G00110710 Rroxscaffold_2G00110720 Rroxscaffold_2G00110730 Rroxscaffold_2G00111170 Rroxscaffold_2G00111510 Rroxscaffold_2G00114750 Rroxscaffold_2G00114760 Rroxscaffold_2G00114770 Rroxscaffold_2G00116270 Rroxscaffold_2G00121090 Rroxscaffold_2G00129350 Rroxscaffold_2G00130410 Rroxscaffold_2G00155930 Rroxscaffold_3G00218120 Rroxscaffold_3G00218330 Rroxscaffold_3G00218340 Rroxscaffold_3G00227530 Rroxscaffold_3G00233140 Rroxscaffold_3G00236800 Rroxscaffold_3G00242370 Rroxscaffold_3G00242380 Rroxscaffold_3G00242410 Rroxscaffold_3G00248720 Rroxscaffold_3G00248730 Rroxscaffold_3G00248770 Rroxscaffold_3G00258550 Rroxscaffold_3G00258560 Rroxscaffold_4G00287000 Rroxscaffold_4G00289070 Rroxscaffold_4G00289080 Rroxscaffold_4G00289100 Rroxscaffold_4G00295600 Rroxscaffold_4G00298090 Rroxscaffold_4G00308330 Rroxscaffold_4G00310570 Rroxscaffold_4G00310580 Rroxscaffold_4G00310620 Rroxscaffold_4G00315750 Rroxscaffold_4G00319620 Rroxscaffold_4G00319630 Rroxscaffold_4G00328870 Rroxscaffold_4G00328880 Rroxscaffold_4G00332120 Rroxscaffold_4G00332310 Rroxscaffold_5G00332660 Rroxscaffold_5G00332710 Rroxscaffold_5G00332970 Rroxscaffold_5G00344920 Rroxscaffold_5G00345540 Rroxscaffold_5G00346760 Rroxscaffold_5G00346770 Rroxscaffold_5G00347420 Rroxscaffold_5G00350360 Rroxscaffold_5G00350370 Rroxscaffold_5G00354490 Rroxscaffold_5G00370760 Rroxscaffold_5G00370770 Rroxscaffold_5G00374010 Rroxscaffold_5G00374020 Rroxscaffold_5G00374490 Rroxscaffold_5G00374510 Rroxscaffold_5G00387640 Rroxscaffold_5G00387650 Rroxscaffold_6G00387870 Rroxscaffold_6G00388560 Rroxscaffold_6G00388570 Rroxscaffold_6G00388670 Rroxscaffold_6G00388680 Rroxscaffold_6G00391960 Rroxscaffold_6G00393010 Rroxscaffold_6G00395010 Rroxscaffold_6G00395020 Rroxscaffold_6G00397990 Rroxscaffold_6G00401460 Rroxscaffold_6G00407850 Rroxscaffold_6G00423090 Rroxscaffold_6G00423100 Rroxscaffold_6G00423110 Rroxscaffold_7G00165960 Rroxscaffold_7G00165970 Rroxscaffold_7G00176270 Rroxscaffold_7G00176280 Rroxscaffold_7G00176600 Rroxscaffold_7G00176610 Rroxscaffold_7G00176620 Rroxscaffold_7G00176660 Rroxscaffold_7G00195710
rosa_rugosa Rorug03G0209000 Rorug05G0468000 Rorug05G0468000
rosa_samantha Rh3AG250900 Rh3AG257700 Rh3BG294700 Rh3CG284700 Rh3CG284800 Rh3DG280200 Rh3DG280300 Rh3DG280500 Rh3DG287600 Rh3DG287700 Rh4BG408500 Rh4DG402700 Rh6CG194400 Rh6CG194600 Rh6DG186400 Rh6DG186500 Rh7AG218100 Rh7AG278800 Rh7BG224200 Rh7CG231300 Rh7CG231400 Rh7DG225400
rosa_wichuraiana Rw3G022640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 965
AccBSI CCGCTC 1 cut(s) 852
AccII CGCG 5 cut(s) 24, 152, 315, 1057, 1218
AclWI GGATC 2 cut(s) 519, 1436
AcoI YGGCCR 4 cut(s) 316, 1125, 1173, 1429
AcsI RAATTY 3 cut(s) 112, 301, 473
AcyI GRCGYC 1 cut(s) 1169
AfaI GTAC 4 cut(s) 724, 753, 884, 1306
AfeI AGCGCT 1 cut(s) 1042
AfiI CCNNNNNNNGG 5 cut(s) 136, 182, 183, 943, 1165
AgsI TTSAA 4 cut(s) 997, 1027, 1036, 1252
AhdI GACNNNNNGTC 2 cut(s) 340, 1162
AluBI AGCT 6 cut(s) 92, 708, 897, 1146, 1234, 1370
AluI AGCT 6 cut(s) 92, 708, 897, 1146, 1234, 1370
Alw21I GWGCWC 2 cut(s) 899, 1148
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 2 cut(s) 519, 1436
Ama87I CYCGRG 7 cut(s) 130, 167, 176, 802, 845, 936, 1391
Aor51HI AGCGCT 1 cut(s) 1042
AoxI GGCC 9 cut(s) 164, 279, 316, 806, 1086, 1125, 1173, 1245, 1429
ApaI GGGCCC 1 cut(s) 168
ApeKI GCWGC 3 cut(s) 708, 776, 1239
ApoI RAATTY 3 cut(s) 112, 301, 473
AspLEI GCGC 4 cut(s) 651, 1043, 1218, 1347
AspS9I GGNCC 8 cut(s) 127, 164, 165, 334, 806, 902, 931, 1156
AsuC2I CCSGG 4 cut(s) 283, 645, 891, 1160
AsuHPI GGTGA 1 cut(s) 95
AsuNHI GCTAGC 2 cut(s) 680, 1396
AvaI CYCGRG 7 cut(s) 130, 167, 176, 802, 845, 936, 1391
AvaII GGWCC 5 cut(s) 127, 334, 902, 931, 1156
BaeGI GKGCMC 2 cut(s) 168, 313
BanI GGYRCC 1 cut(s) 965
BanII GRGCYC 4 cut(s) 168, 840, 899, 1148
BauI CACGAG 1 cut(s) 96
Bbv12I GWGCWC 2 cut(s) 899, 1148
BbvI GCAGC 3 cut(s) 695, 788, 1251
BccI CCATC 4 cut(s) 589, 817, 949, 1018
BceAI ACGGC 5 cut(s) 33, 755, 953, 1086, 1091
BcgI CGANNNNNNTGC 2 cut(s) 1389, 1423
BcnI CCSGG 4 cut(s) 283, 645, 891, 1160
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 7 cut(s) 357, 669, 681, 1044, 1098, 1137, 1397
BfoI RGCGCY 3 cut(s) 652, 1044, 1348
BglI GCCNNNNNGGC 2 cut(s) 223, 1353
BglII AGATCT 1 cut(s) 1004
BisI GCNGC 8 cut(s) 227, 316, 709, 777, 1240, 1429, 1432, 1435
BlsI GCNGC 8 cut(s) 228, 317, 710, 778, 1241, 1430, 1433, 1436
BmcAI AGTACT 1 cut(s) 884
Bme1390I CCNGG 4 cut(s) 283, 645, 891, 1160
Bme18I GGWCC 5 cut(s) 127, 334, 902, 931, 1156
BmeRI GACNNNNNGTC 2 cut(s) 340, 1162
BmeT110I CYCGRG 7 cut(s) 130, 167, 176, 802, 845, 936, 1391
BmgT120I GGNCC 8 cut(s) 127, 164, 165, 334, 806, 902, 931, 1156
BmrFI CCNGG 4 cut(s) 283, 645, 891, 1160
BmsI GCATC 7 cut(s) 154, 253, 424, 667, 682, 1210, 1353
BmtI GCTAGC 2 cut(s) 684, 1400
BplI GAGNNNNNCTC 4 cut(s) 53, 85, 679, 711
BpmI CTGGAG 1 cut(s) 1392
Bpu10I CCTNAGC 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 1351
BpuMI CCSGG 4 cut(s) 283, 645, 891, 1160
BsaBI GATNNNNATC 1 cut(s) 1009
BsaHI GRCGYC 1 cut(s) 1169
BsaWI WCCGGW 2 cut(s) 259, 899
BsaXI ACNNNNNCTCC 4 cut(s) 765, 795, 886, 916
Bsc4I CCNNNNNNNGG 5 cut(s) 136, 182, 183, 943, 1165
Bse8I GATNNNNATC 1 cut(s) 1009
BseGI GGATG 7 cut(s) 160, 268, 373, 682, 864, 960, 1368
BseJI GATNNNNATC 1 cut(s) 1009
BseLI CCNNNNNNNGG 5 cut(s) 136, 182, 183, 943, 1165
BseRI GAGGAG 3 cut(s) 786, 1193, 1329
BseSI GKGCMC 2 cut(s) 168, 313
BseX3I CGGCCG 3 cut(s) 1125, 1173, 1429
BseXI GCAGC 3 cut(s) 695, 788, 1251
Bsh1236I CGCG 5 cut(s) 24, 152, 315, 1057, 1218
Bsh1285I CGRYCG 4 cut(s) 1128, 1176, 1276, 1432
BshFI GGCC 9 cut(s) 166, 281, 318, 808, 1088, 1127, 1175, 1247, 1431
BshNI GGYRCC 1 cut(s) 965
BsiEI CGRYCG 4 cut(s) 1128, 1176, 1276, 1432
BsiHKAI GWGCWC 2 cut(s) 899, 1148
BsiHKCI CYCGRG 7 cut(s) 130, 167, 176, 802, 845, 936, 1391
BsiSI CCGG 9 cut(s) 260, 282, 644, 656, 890, 900, 1124, 1141, 1160
BslFI GGGAC 4 cut(s) 113, 805, 888, 917
BslI CCNNNNNNNGG 5 cut(s) 136, 182, 183, 943, 1165
BsmAI GTCTC 1 cut(s) 173
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 4 cut(s) 113, 805, 888, 917
BsmI GAATGC 1 cut(s) 873
BsnI GGCC 9 cut(s) 166, 281, 318, 808, 1088, 1127, 1175, 1247, 1431
BsoBI CYCGRG 7 cut(s) 130, 167, 176, 802, 845, 936, 1391
Bsp120I GGGCCC 1 cut(s) 164
Bsp1286I GDGCHC 5 cut(s) 168, 313, 840, 899, 1148
Bsp143I GATC 5 cut(s) 511, 1004, 1273, 1324, 1441
BspANI GGCC 9 cut(s) 166, 281, 318, 808, 1088, 1127, 1175, 1247, 1431
BspFNI CGCG 5 cut(s) 24, 152, 315, 1057, 1218
BspOI GCTAGC 2 cut(s) 684, 1400
BspPI GGATC 2 cut(s) 519, 1436
BspT107I GGYRCC 1 cut(s) 965
BsrBI CCGCTC 1 cut(s) 852
BssMI GATC 5 cut(s) 511, 1004, 1273, 1324, 1441
BssNI GRCGYC 1 cut(s) 1169
BssSI CACGAG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 96
Bst4CI ACNGT 2 cut(s) 382, 1417
BstACI GRCGYC 1 cut(s) 1169
BstC8I GCNNGC 6 cut(s) 313, 682, 766, 1368, 1398, 1426
BstDEI CTNAG 2 cut(s) 236, 813
BstDSI CCRYGG 2 cut(s) 49, 73
BstF5I GGATG 7 cut(s) 160, 268, 373, 682, 864, 960, 1368
BstFNI CGCG 5 cut(s) 24, 152, 315, 1057, 1218
BstH2I RGCGCY 3 cut(s) 652, 1044, 1348
BstHHI GCGC 4 cut(s) 651, 1043, 1218, 1347
BstKTI GATC 5 cut(s) 514, 1007, 1276, 1327, 1444
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 5 cut(s) 511, 1004, 1273, 1324, 1441
BstMCI CGRYCG 4 cut(s) 1128, 1176, 1276, 1432
BstMWI GCNNNNNNNGC 4 cut(s) 223, 1124, 1353, 1434
BstSCI CCNGG 4 cut(s) 281, 643, 889, 1158
BstSLI GKGCMC 2 cut(s) 168, 313
BstUI CGCG 5 cut(s) 24, 152, 315, 1057, 1218
BstV1I GCAGC 3 cut(s) 695, 788, 1251
BstX2I RGATCY 2 cut(s) 1004, 1441
BstYI RGATCY 2 cut(s) 1004, 1441
BstZI CGGCCG 3 cut(s) 1125, 1173, 1429
BsuRI GGCC 9 cut(s) 166, 281, 318, 808, 1088, 1127, 1175, 1247, 1431
BtgI CCRYGG 2 cut(s) 49, 73
BtgZI GCGATG 1 cut(s) 1233
BtsCI GGATG 7 cut(s) 160, 268, 373, 682, 864, 960, 1368
BtsI GCAGTG 1 cut(s) 786
BtsIMutI CAGTG 1 cut(s) 786
Cac8I GCNNGC 6 cut(s) 313, 682, 766, 1368, 1398, 1426
CciNI GCGGCCGC 1 cut(s) 1429
CfoI GCGC 4 cut(s) 651, 1043, 1218, 1347
Cfr13I GGNCC 8 cut(s) 127, 164, 165, 334, 806, 902, 931, 1156
CseI GACGC 1 cut(s) 1158
Csp6I GTAC 4 cut(s) 723, 752, 883, 1305
CviAII CATG 4 cut(s) 122, 409, 542, 1446
CviQI GTAC 4 cut(s) 723, 752, 883, 1305
DdeI CTNAG 2 cut(s) 236, 813
DpnI GATC 5 cut(s) 513, 1006, 1275, 1326, 1443
DpnII GATC 5 cut(s) 511, 1004, 1273, 1324, 1441
DraI TTTAAA 1 cut(s) 1290
DriI GACNNNNNGTC 2 cut(s) 340, 1162
EaeI YGGCCR 4 cut(s) 316, 1125, 1173, 1429
EagI CGGCCG 3 cut(s) 1125, 1173, 1429
Eam1105I GACNNNNNGTC 2 cut(s) 340, 1162
EciI GGCGGA 1 cut(s) 674
Ecl136II GAGCTC 2 cut(s) 897, 1146
EclXI CGGCCG 3 cut(s) 1125, 1173, 1429
Eco24I GRGCYC 4 cut(s) 168, 840, 899, 1148
Eco32I GATATC 1 cut(s) 1053
Eco47I GGWCC 5 cut(s) 127, 334, 902, 931, 1156
Eco47III AGCGCT 1 cut(s) 1042
Eco52I CGGCCG 3 cut(s) 1125, 1173, 1429
Eco53kI GAGCTC 2 cut(s) 897, 1146
Eco88I CYCGRG 7 cut(s) 130, 167, 176, 802, 845, 936, 1391
EcoICRI GAGCTC 2 cut(s) 897, 1146
EcoO109I RGGNCCY 4 cut(s) 127, 164, 334, 1156
EcoRI GAATTC 1 cut(s) 112
EcoRV GATATC 1 cut(s) 1053
EcoT38I GRGCYC 4 cut(s) 168, 840, 899, 1148
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 4 cut(s) 125, 412, 545, 1449
FaqI GGGAC 4 cut(s) 113, 805, 888, 917
FatI CATG 4 cut(s) 121, 408, 541, 1445
FauI CCCGC 5 cut(s) 517, 845, 940, 1050, 1197
FauNDI CATATG 1 cut(s) 796
Fnu4HI GCNGC 8 cut(s) 227, 316, 709, 777, 1240, 1429, 1432, 1435
FokI GGATG 7 cut(s) 167, 275, 380, 689, 871, 967, 1375
FriOI GRGCYC 4 cut(s) 168, 840, 899, 1148
Fsp4HI GCNGC 8 cut(s) 227, 316, 709, 777, 1240, 1429, 1432, 1435
FspBI CTAG 7 cut(s) 357, 669, 681, 1044, 1098, 1137, 1397
GlaI GCGC 4 cut(s) 650, 1042, 1217, 1346
GluI GCNGC 8 cut(s) 227, 316, 709, 777, 1240, 1429, 1432, 1435
GsuI CTGGAG 1 cut(s) 1392
HaeII RGCGCY 3 cut(s) 652, 1044, 1348
HaeIII GGCC 9 cut(s) 166, 281, 318, 808, 1088, 1127, 1175, 1247, 1431
HapII CCGG 9 cut(s) 260, 282, 644, 656, 890, 900, 1124, 1141, 1160
HgaI GACGC 1 cut(s) 1158
HhaI GCGC 4 cut(s) 651, 1043, 1218, 1347
Hin1I GRCGYC 1 cut(s) 1169
Hin1II CATG 4 cut(s) 125, 412, 545, 1449
Hin6I GCGC 4 cut(s) 649, 1041, 1216, 1345
HinP1I GCGC 4 cut(s) 649, 1041, 1216, 1345
HinfI GANTC 2 cut(s) 912, 939
HpaII CCGG 9 cut(s) 260, 282, 644, 656, 890, 900, 1124, 1141, 1160
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 723
Hpy188I TCNGA 2 cut(s) 406, 917
Hpy188III TCNNGA 9 cut(s) 98, 130, 176, 362, 455, 536, 735, 847, 1271
Hpy8I GTNNAC 1 cut(s) 723
Hpy99I CGWCG 4 cut(s) 277, 718, 741, 1174
HpyAV CCTTC 4 cut(s) 80, 95, 271, 347
HpyCH4III ACNGT 2 cut(s) 382, 1417
HpyCH4V TGCA 6 cut(s) 121, 378, 415, 924, 1118, 1189
HpyF10VI GCNNNNNNNGC 4 cut(s) 223, 1124, 1353, 1434
HpyF3I CTNAG 2 cut(s) 236, 813
Hsp92I GRCGYC 1 cut(s) 1169
Hsp92II CATG 4 cut(s) 125, 412, 545, 1449
HspAI GCGC 4 cut(s) 649, 1041, 1216, 1345
KflI GGGWCCC 1 cut(s) 127
Kzo9I GATC 5 cut(s) 511, 1004, 1273, 1324, 1441
Lsp1109I GCAGC 3 cut(s) 695, 788, 1251
LweI GCATC 7 cut(s) 154, 253, 424, 667, 682, 1210, 1353
MaeI CTAG 7 cut(s) 357, 669, 681, 1044, 1098, 1137, 1397
MaeIII GTNAC 3 cut(s) 397, 1093, 1132
MalI GATC 5 cut(s) 513, 1006, 1275, 1326, 1443
MbiI CCGCTC 1 cut(s) 852
MboI GATC 5 cut(s) 511, 1004, 1273, 1324, 1441
MboII GAAGA 3 cut(s) 33, 604, 1039
MflI RGATCY 2 cut(s) 1004, 1441
MhlI GDGCHC 5 cut(s) 168, 313, 840, 899, 1148
MluCI AATT 5 cut(s) 112, 301, 324, 473, 1119
MlyI GAGTC 1 cut(s) 948
MmeI TCCRAC 6 cut(s) 180, 364, 460, 727, 1176, 1209
MseI TTAA 1 cut(s) 1289
MslI CAYNNNNRTG 1 cut(s) 486
MspI CCGG 9 cut(s) 260, 282, 644, 656, 890, 900, 1124, 1141, 1160
MspR9I CCNGG 4 cut(s) 283, 645, 891, 1160
Mva1269I GAATGC 1 cut(s) 873
MvnI CGCG 5 cut(s) 24, 152, 315, 1057, 1218
MwoI GCNNNNNNNGC 4 cut(s) 223, 1124, 1353, 1434
NciI CCSGG 4 cut(s) 283, 645, 891, 1160
NdeI CATATG 1 cut(s) 796
NdeII GATC 5 cut(s) 511, 1004, 1273, 1324, 1441
NheI GCTAGC 2 cut(s) 680, 1396
NlaIII CATG 4 cut(s) 125, 412, 545, 1449
NmeAIII GCCGAG 7 cut(s) 794, 812, 1013, 1114, 1153, 1201, 1249
NotI GCGGCCGC 1 cut(s) 1429
PcsI WCGNNNNNNNCGW 3 cut(s) 13, 28, 1086
PctI GAATGC 1 cut(s) 873
PfeI GAWTC 1 cut(s) 912
PkrI GCNGC 8 cut(s) 228, 317, 710, 778, 1241, 1430, 1433, 1436
Ple19I CGATCG 1 cut(s) 1276
PleI GAGTC 1 cut(s) 947
PpsI GAGTC 1 cut(s) 947
PpuMI RGGWCCY 3 cut(s) 127, 334, 1156
Psp124BI GAGCTC 2 cut(s) 899, 1148
Psp5II RGGWCCY 3 cut(s) 127, 334, 1156
PspOMI GGGCCC 1 cut(s) 164
PspPI GGNCC 8 cut(s) 127, 164, 165, 334, 806, 902, 931, 1156
PspPPI RGGWCCY 3 cut(s) 127, 334, 1156
PsuI RGATCY 2 cut(s) 1004, 1441
PvuI CGATCG 1 cut(s) 1276
RsaI GTAC 4 cut(s) 724, 753, 884, 1306
RsaNI GTAC 4 cut(s) 723, 752, 883, 1305
RseI CAYNNNNRTG 1 cut(s) 486
SacI GAGCTC 2 cut(s) 899, 1148
SaqAI TTAA 1 cut(s) 1289
SatI GCNGC 8 cut(s) 227, 316, 709, 777, 1240, 1429, 1432, 1435
Sau3AI GATC 5 cut(s) 511, 1004, 1273, 1324, 1441
Sau96I GGNCC 8 cut(s) 127, 164, 165, 334, 806, 902, 931, 1156
ScaI AGTACT 1 cut(s) 884
SchI GAGTC 1 cut(s) 948
ScrFI CCNGG 4 cut(s) 283, 645, 891, 1160
SduI GDGCHC 5 cut(s) 168, 313, 840, 899, 1148
SfaNI GCATC 7 cut(s) 154, 253, 424, 667, 682, 1210, 1353
SinI GGWCC 5 cut(s) 127, 334, 902, 931, 1156
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 1330
SmoI CTYRAG 1 cut(s) 1330
Sse9I AATT 5 cut(s) 112, 301, 324, 473, 1119
SspMI CTAG 7 cut(s) 357, 669, 681, 1044, 1098, 1137, 1397
SstI GAGCTC 2 cut(s) 899, 1148
StyD4I CCNGG 4 cut(s) 281, 643, 889, 1158
TaaI ACNGT 2 cut(s) 382, 1417
TaqI TCGA 9 cut(s) 141, 192, 272, 623, 736, 827, 983, 1013, 1409
TasI AATT 5 cut(s) 112, 301, 324, 473, 1119
TatI WGTACW 1 cut(s) 882
TauI GCSGC 5 cut(s) 229, 318, 1431, 1434, 1437
TfiI GAWTC 1 cut(s) 912
Tru1I TTAA 1 cut(s) 1289
Tru9I TTAA 1 cut(s) 1289
TscAI CASTG 1 cut(s) 786
TseI GCWGC 3 cut(s) 708, 776, 1239
TspGWI ACGGA 2 cut(s) 330, 434
TspRI CASTG 1 cut(s) 786
VpaK11BI GGWCC 5 cut(s) 127, 334, 902, 931, 1156
XapI RAATTY 3 cut(s) 112, 301, 473
XspI CTAG 7 cut(s) 357, 669, 681, 1044, 1098, 1137, 1397
ZrmI AGTACT 1 cut(s) 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.