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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 357, 408 |
| Acc65I | GGTACC | 1 cut(s) | 578 |
| AccB1I | GGYRCC | 1 cut(s) | 578 |
| AccII | CGCG | 1 cut(s) | 457 |
| AciI | CCGC | 4 cut(s) | 77, 290, 397, 606 |
| AcyI | GRCGYC | 3 cut(s) | 286, 354, 405 |
| AfaI | GTAC | 1 cut(s) | 580 |
| AgsI | TTSAA | 1 cut(s) | 275 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 555, 587 |
| AleI | CACNNNNGTG | 1 cut(s) | 96 |
| AluBI | AGCT | 2 cut(s) | 412, 488 |
| AluI | AGCT | 2 cut(s) | 412, 488 |
| Alw21I | GWGCWC | 1 cut(s) | 112 |
| Alw26I | GTCTC | 4 cut(s) | 372, 380, 587, 593 |
| Ama87I | CYCGRG | 2 cut(s) | 65, 582 |
| AoxI | GGCC | 1 cut(s) | 446 |
| ApaI | GGGCCC | 1 cut(s) | 450 |
| Asp718I | GGTACC | 1 cut(s) | 578 |
| AspLEI | GCGC | 1 cut(s) | 37 |
| AspS9I | GGNCC | 3 cut(s) | 446, 447, 630 |
| AsuC2I | CCSGG | 1 cut(s) | 119 |
| AsuHPI | GGTGA | 2 cut(s) | 494, 629 |
| AvaI | CYCGRG | 2 cut(s) | 65, 582 |
| AvaII | GGWCC | 1 cut(s) | 630 |
| BaeGI | GKGCMC | 1 cut(s) | 450 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 570, 603 |
| BanI | GGYRCC | 1 cut(s) | 578 |
| BanII | GRGCYC | 1 cut(s) | 450 |
| BauI | CACGAG | 2 cut(s) | 20, 41 |
| Bbv12I | GWGCWC | 1 cut(s) | 112 |
| BccI | CCATC | 1 cut(s) | 620 |
| BceAI | ACGGC | 2 cut(s) | 405, 491 |
| BcnI | CCSGG | 1 cut(s) | 119 |
| BcoDI | GTCTC | 4 cut(s) | 372, 380, 587, 593 |
| BfaI | CTAG | 2 cut(s) | 180, 498 |
| BfoI | RGCGCY | 1 cut(s) | 38 |
| Bme1390I | CCNGG | 1 cut(s) | 119 |
| Bme18I | GGWCC | 1 cut(s) | 630 |
| BmeT110I | CYCGRG | 2 cut(s) | 65, 582 |
| BmgT120I | GGNCC | 3 cut(s) | 446, 447, 630 |
| BmiI | GGNNCC | 4 cut(s) | 448, 537, 580, 631 |
| BmrFI | CCNGG | 1 cut(s) | 119 |
| BmsI | GCATC | 2 cut(s) | 316, 505 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 313, 345 |
| Bpu10I | CCTNAGC | 1 cut(s) | 489 |
| BpuMI | CCSGG | 1 cut(s) | 119 |
| BsaHI | GRCGYC | 3 cut(s) | 286, 354, 405 |
| BsaI | GGTCTC | 1 cut(s) | 593 |
| BsaJI | CCNNGG | 3 cut(s) | 219, 339, 531 |
| BseDI | CCNNGG | 3 cut(s) | 219, 339, 531 |
| BseGI | GGATG | 1 cut(s) | 631 |
| BseRI | GAGGAG | 4 cut(s) | 83, 86, 102, 528 |
| BseSI | GKGCMC | 1 cut(s) | 450 |
| Bsh1236I | CGCG | 1 cut(s) | 457 |
| BshFI | GGCC | 1 cut(s) | 448 |
| BshNI | GGYRCC | 1 cut(s) | 578 |
| BsiHKAI | GWGCWC | 1 cut(s) | 112 |
| BsiHKCI | CYCGRG | 2 cut(s) | 65, 582 |
| BsiSI | CCGG | 1 cut(s) | 118 |
| BsmAI | GTCTC | 4 cut(s) | 372, 380, 587, 593 |
| BsmBI | CGTCTC | 2 cut(s) | 380, 587 |
| BsnI | GGCC | 1 cut(s) | 448 |
| Bso31I | GGTCTC | 1 cut(s) | 593 |
| BsoBI | CYCGRG | 2 cut(s) | 65, 582 |
| Bsp120I | GGGCCC | 1 cut(s) | 446 |
| Bsp1286I | GDGCHC | 2 cut(s) | 112, 450 |
| Bsp68I | TCGCGA | 1 cut(s) | 457 |
| BspACI | CCGC | 4 cut(s) | 77, 290, 397, 606 |
| BspANI | GGCC | 1 cut(s) | 448 |
| BspFNI | CGCG | 1 cut(s) | 457 |
| BspLI | GGNNCC | 4 cut(s) | 448, 537, 580, 631 |
| BspT107I | GGYRCC | 1 cut(s) | 578 |
| BspTNI | GGTCTC | 1 cut(s) | 593 |
| BssECI | CCNNGG | 3 cut(s) | 219, 339, 531 |
| BssNI | GRCGYC | 3 cut(s) | 286, 354, 405 |
| BssSI | CACGAG | 2 cut(s) | 20, 41 |
| BssT1I | CCWWGG | 1 cut(s) | 219 |
| Bst2BI | CACGAG | 2 cut(s) | 20, 41 |
| BstACI | GRCGYC | 3 cut(s) | 286, 354, 405 |
| BstDEI | CTNAG | 1 cut(s) | 489 |
| BstF5I | GGATG | 1 cut(s) | 631 |
| BstFNI | CGCG | 1 cut(s) | 457 |
| BstH2I | RGCGCY | 1 cut(s) | 38 |
| BstHHI | GCGC | 1 cut(s) | 37 |
| BstMAI | GTCTC | 4 cut(s) | 372, 380, 587, 593 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 83, 335, 454 |
| BstSCI | CCNGG | 1 cut(s) | 117 |
| BstSLI | GKGCMC | 1 cut(s) | 450 |
| BstUI | CGCG | 1 cut(s) | 457 |
| BsuRI | GGCC | 1 cut(s) | 448 |
| BtgZI | GCGATG | 3 cut(s) | 163, 339, 582 |
| BtsCI | GGATG | 1 cut(s) | 631 |
| BtuMI | TCGCGA | 1 cut(s) | 457 |
| CfoI | GCGC | 1 cut(s) | 37 |
| Cfr13I | GGNCC | 3 cut(s) | 446, 447, 630 |
| CseI | GACGC | 1 cut(s) | 275 |
| Csp6I | GTAC | 1 cut(s) | 579 |
| CviJI | RGCY | 9 cut(s) | 165, 253, 311, 412, 448, 488, 501, 506, 536 |
| CviKI_1 | RGCY | 9 cut(s) | 165, 253, 311, 412, 448, 488, 501, 506, 536 |
| CviQI | GTAC | 1 cut(s) | 579 |
| DdeI | CTNAG | 1 cut(s) | 489 |
| EciI | GGCGGA | 1 cut(s) | 279 |
| Eco130I | CCWWGG | 1 cut(s) | 219 |
| Eco24I | GRGCYC | 1 cut(s) | 450 |
| Eco31I | GGTCTC | 1 cut(s) | 593 |
| Eco32I | GATATC | 2 cut(s) | 297, 349 |
| Eco47I | GGWCC | 1 cut(s) | 630 |
| Eco88I | CYCGRG | 2 cut(s) | 65, 582 |
| EcoO109I | RGGNCCY | 2 cut(s) | 446, 630 |
| EcoRV | GATATC | 2 cut(s) | 297, 349 |
| EcoT14I | CCWWGG | 1 cut(s) | 219 |
| EcoT38I | GRGCYC | 1 cut(s) | 450 |
| ErhI | CCWWGG | 1 cut(s) | 219 |
| Esp3I | CGTCTC | 2 cut(s) | 380, 587 |
| FaiI | YATR | 4 cut(s) | 262, 264, 334, 365 |
| FauI | CCCGC | 2 cut(s) | 70, 613 |
| FriOI | GRGCYC | 1 cut(s) | 450 |
| FspBI | CTAG | 2 cut(s) | 180, 498 |
| GlaI | GCGC | 1 cut(s) | 36 |
| HaeII | RGCGCY | 1 cut(s) | 38 |
| HaeIII | GGCC | 1 cut(s) | 448 |
| HapII | CCGG | 1 cut(s) | 118 |
| HgaI | GACGC | 1 cut(s) | 275 |
| HhaI | GCGC | 1 cut(s) | 37 |
| Hin1I | GRCGYC | 3 cut(s) | 286, 354, 405 |
| Hin6I | GCGC | 1 cut(s) | 35 |
| HinP1I | GCGC | 1 cut(s) | 35 |
| HpaII | CCGG | 1 cut(s) | 118 |
| HphI | GGTGA | 2 cut(s) | 494, 629 |
| Hpy188I | TCNGA | 1 cut(s) | 258 |
| Hpy188III | TCNNGA | 3 cut(s) | 65, 136, 456 |
| Hpy99I | CGWCG | 2 cut(s) | 356, 410 |
| HpyAV | CCTTC | 2 cut(s) | 142, 557 |
| HpyCH4IV | ACGT | 2 cut(s) | 354, 405 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 83, 335, 454 |
| HpyF3I | CTNAG | 1 cut(s) | 489 |
| HpySE526I | ACGT | 2 cut(s) | 354, 405 |
| Hsp92I | GRCGYC | 3 cut(s) | 286, 354, 405 |
| HspAI | GCGC | 1 cut(s) | 35 |
| KpnI | GGTACC | 1 cut(s) | 582 |
| LmnI | GCTCC | 3 cut(s) | 115, 334, 541 |
| LpnPI | CCDG | 2 cut(s) | 131, 622 |
| LweI | GCATC | 2 cut(s) | 316, 505 |
| MaeI | CTAG | 2 cut(s) | 180, 498 |
| MaeII | ACGT | 2 cut(s) | 354, 405 |
| MaeIII | GTNAC | 2 cut(s) | 401, 493 |
| MboII | GAAGA | 1 cut(s) | 291 |
| MhlI | GDGCHC | 2 cut(s) | 112, 450 |
| MslI | CAYNNNNRTG | 2 cut(s) | 96, 362 |
| MspI | CCGG | 1 cut(s) | 118 |
| MspR9I | CCNGG | 1 cut(s) | 119 |
| MvnI | CGCG | 1 cut(s) | 457 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 83, 335, 454 |
| NciI | CCSGG | 1 cut(s) | 119 |
| NlaIV | GGNNCC | 4 cut(s) | 448, 537, 580, 631 |
| NmeAIII | GCCGAG | 3 cut(s) | 364, 556, 616 |
| NmuCI | GTSAC | 1 cut(s) | 401 |
| NruI | TCGCGA | 1 cut(s) | 457 |
| OliI | CACNNNNGTG | 1 cut(s) | 96 |
| PaeR7I | CTCGAG | 1 cut(s) | 65 |
| PpuMI | RGGWCCY | 1 cut(s) | 630 |
| Psp5II | RGGWCCY | 1 cut(s) | 630 |
| PspN4I | GGNNCC | 4 cut(s) | 448, 537, 580, 631 |
| PspOMI | GGGCCC | 1 cut(s) | 446 |
| PspPI | GGNCC | 3 cut(s) | 446, 447, 630 |
| PspPPI | RGGWCCY | 1 cut(s) | 630 |
| RruI | TCGCGA | 1 cut(s) | 457 |
| RsaI | GTAC | 1 cut(s) | 580 |
| RsaNI | GTAC | 1 cut(s) | 579 |
| RseI | CAYNNNNRTG | 2 cut(s) | 96, 362 |
| Sau96I | GGNCC | 3 cut(s) | 446, 447, 630 |
| ScrFI | CCNGG | 1 cut(s) | 119 |
| SduI | GDGCHC | 2 cut(s) | 112, 450 |
| SfaNI | GCATC | 2 cut(s) | 316, 505 |
| Sfr274I | CTCGAG | 1 cut(s) | 65 |
| SinI | GGWCC | 1 cut(s) | 630 |
| SlaI | CTCGAG | 1 cut(s) | 65 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 96, 362 |
| SmlI | CTYRAG | 1 cut(s) | 65 |
| SmoI | CTYRAG | 1 cut(s) | 65 |
| SsiI | CCGC | 4 cut(s) | 77, 290, 397, 606 |
| SspMI | CTAG | 2 cut(s) | 180, 498 |
| StyD4I | CCNGG | 1 cut(s) | 117 |
| StyI | CCWWGG | 1 cut(s) | 219 |
| TaiI | ACGT | 2 cut(s) | 357, 408 |
| TaqI | TCGA | 5 cut(s) | 66, 302, 351, 408, 541 |
| TseFI | GTSAC | 1 cut(s) | 401 |
| Tsp45I | GTSAC | 1 cut(s) | 401 |
| TspGWI | ACGGA | 2 cut(s) | 566, 611 |
| VpaK11BI | GGWCC | 1 cut(s) | 630 |
| XhoI | CTCGAG | 1 cut(s) | 65 |
| XspI | CTAG | 2 cut(s) | 180, 498 |
| ZraI | GACGTC | 2 cut(s) | 355, 406 |