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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 93 |
| Acc36I | ACCTGC | 1 cut(s) | 93 |
| AccBSI | CCGCTC | 1 cut(s) | 439 |
| AccII | CGCG | 5 cut(s) | 139, 166, 177, 200, 202 |
| AciI | CCGC | 6 cut(s) | 260, 278, 284, 294, 316, 439 |
| AclWI | GGATC | 1 cut(s) | 294 |
| AcyI | GRCGYC | 1 cut(s) | 232 |
| AfaI | GTAC | 1 cut(s) | 46 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 107, 156, 245, 259, 309, 367, 412 |
| Alw26I | GTCTC | 2 cut(s) | 139, 200 |
| AlwI | GGATC | 1 cut(s) | 294 |
| Ama87I | CYCGRG | 2 cut(s) | 120, 324 |
| AoxI | GGCC | 1 cut(s) | 441 |
| ApeKI | GCWGC | 2 cut(s) | 280, 409 |
| AspA2I | CCTAGG | 2 cut(s) | 208, 308 |
| AspLEI | GCGC | 5 cut(s) | 40, 90, 141, 202, 204 |
| AspS9I | GGNCC | 2 cut(s) | 72, 441 |
| AsuC2I | CCSGG | 4 cut(s) | 42, 103, 190, 406 |
| AsuHPI | GGTGA | 2 cut(s) | 73, 391 |
| AvaI | CYCGRG | 2 cut(s) | 120, 324 |
| AvaII | GGWCC | 1 cut(s) | 72 |
| AvrII | CCTAGG | 2 cut(s) | 208, 308 |
| BauI | CACGAG | 1 cut(s) | 287 |
| BbvI | GCAGC | 2 cut(s) | 292, 396 |
| BccI | CCATC | 2 cut(s) | 222, 231 |
| BceAI | ACGGC | 1 cut(s) | 428 |
| BciVI | GTATCC | 1 cut(s) | 24 |
| BcnI | CCSGG | 4 cut(s) | 42, 103, 190, 406 |
| BcoDI | GTCTC | 2 cut(s) | 139, 200 |
| BfaI | CTAG | 2 cut(s) | 209, 309 |
| BfmI | CTRYAG | 1 cut(s) | 410 |
| BfuAI | ACCTGC | 1 cut(s) | 93 |
| BfuI | GTATCC | 1 cut(s) | 24 |
| BglII | AGATCT | 1 cut(s) | 116 |
| BisI | GCNGC | 3 cut(s) | 281, 284, 410 |
| BlnI | CCTAGG | 2 cut(s) | 208, 308 |
| BlsI | GCNGC | 3 cut(s) | 282, 285, 411 |
| Bme1390I | CCNGG | 4 cut(s) | 42, 103, 190, 406 |
| Bme18I | GGWCC | 1 cut(s) | 72 |
| BmeT110I | CYCGRG | 2 cut(s) | 120, 324 |
| BmgT120I | GGNCC | 2 cut(s) | 72, 441 |
| BmiI | GGNNCC | 1 cut(s) | 419 |
| BmrFI | CCNGG | 4 cut(s) | 42, 103, 190, 406 |
| BpuMI | CCSGG | 4 cut(s) | 42, 103, 190, 406 |
| Bsa29I | ATCGAT | 1 cut(s) | 226 |
| BsaAI | YACGTR | 1 cut(s) | 35 |
| BsaHI | GRCGYC | 1 cut(s) | 232 |
| BsaI | GGTCTC | 1 cut(s) | 200 |
| BsaJI | CCNNGG | 6 cut(s) | 91, 101, 189, 208, 308, 444 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 363, 393 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 107, 156, 245, 259, 309, 367, 412 |
| Bse3DI | GCAATG | 1 cut(s) | 269 |
| BseCI | ATCGAT | 1 cut(s) | 226 |
| BseDI | CCNNGG | 6 cut(s) | 91, 101, 189, 208, 308, 444 |
| BseGI | GGATG | 3 cut(s) | 18, 55, 235 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 107, 156, 245, 259, 309, 367, 412 |
| BseMI | GCAATG | 1 cut(s) | 269 |
| BsePI | GCGCGC | 1 cut(s) | 200 |
| BseXI | GCAGC | 2 cut(s) | 292, 396 |
| Bsh1236I | CGCG | 5 cut(s) | 139, 166, 177, 200, 202 |
| BshFI | GGCC | 1 cut(s) | 443 |
| BshVI | ATCGAT | 1 cut(s) | 226 |
| BsiHKCI | CYCGRG | 2 cut(s) | 120, 324 |
| BsiSI | CCGG | 4 cut(s) | 41, 103, 189, 406 |
| BslFI | GGGAC | 1 cut(s) | 84 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 107, 156, 245, 259, 309, 367, 412 |
| BsmAI | GTCTC | 2 cut(s) | 139, 200 |
| BsmBI | CGTCTC | 1 cut(s) | 139 |
| BsmFI | GGGAC | 1 cut(s) | 84 |
| BsmI | GAATGC | 1 cut(s) | 429 |
| BsnI | GGCC | 1 cut(s) | 443 |
| Bso31I | GGTCTC | 1 cut(s) | 200 |
| BsoBI | CYCGRG | 2 cut(s) | 120, 324 |
| Bsp143I | GATC | 4 cut(s) | 116, 216, 299, 391 |
| Bsp68I | TCGCGA | 2 cut(s) | 166, 177 |
| BspACI | CCGC | 6 cut(s) | 260, 278, 284, 294, 316, 439 |
| BspANI | GGCC | 1 cut(s) | 443 |
| BspDI | ATCGAT | 1 cut(s) | 226 |
| BspFNI | CGCG | 5 cut(s) | 139, 166, 177, 200, 202 |
| BspLI | GGNNCC | 1 cut(s) | 419 |
| BspMAI | CTGCAG | 1 cut(s) | 414 |
| BspMI | ACCTGC | 1 cut(s) | 93 |
| BspPI | GGATC | 1 cut(s) | 294 |
| BspTNI | GGTCTC | 1 cut(s) | 200 |
| BsrBI | CCGCTC | 1 cut(s) | 439 |
| BsrDI | GCAATG | 1 cut(s) | 269 |
| BssECI | CCNNGG | 6 cut(s) | 91, 101, 189, 208, 308, 444 |
| BssHII | GCGCGC | 1 cut(s) | 200 |
| BssMI | GATC | 4 cut(s) | 116, 216, 299, 391 |
| BssNI | GRCGYC | 1 cut(s) | 232 |
| BssSI | CACGAG | 1 cut(s) | 287 |
| BssT1I | CCWWGG | 3 cut(s) | 91, 208, 308 |
| Bst2BI | CACGAG | 1 cut(s) | 287 |
| Bst6I | CTCTTC | 1 cut(s) | 2 |
| BstACI | GRCGYC | 1 cut(s) | 232 |
| BstBAI | YACGTR | 1 cut(s) | 35 |
| BstC8I | GCNNGC | 2 cut(s) | 202, 441 |
| BstDSI | CCRYGG | 1 cut(s) | 444 |
| BstF5I | GGATG | 3 cut(s) | 18, 55, 235 |
| BstFNI | CGCG | 5 cut(s) | 139, 166, 177, 200, 202 |
| BstHHI | GCGC | 5 cut(s) | 40, 90, 141, 202, 204 |
| BstKTI | GATC | 4 cut(s) | 119, 219, 302, 394 |
| BstMAI | GTCTC | 2 cut(s) | 139, 200 |
| BstMBI | GATC | 4 cut(s) | 116, 216, 299, 391 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 210, 280 |
| BstSCI | CCNGG | 4 cut(s) | 40, 101, 188, 404 |
| BstSFI | CTRYAG | 1 cut(s) | 410 |
| BstUI | CGCG | 5 cut(s) | 139, 166, 177, 200, 202 |
| BstV1I | GCAGC | 2 cut(s) | 292, 396 |
| BstX2I | RGATCY | 2 cut(s) | 116, 299 |
| BstYI | RGATCY | 2 cut(s) | 116, 299 |
| Bsu15I | ATCGAT | 1 cut(s) | 226 |
| BsuI | GTATCC | 1 cut(s) | 24 |
| BsuRI | GGCC | 1 cut(s) | 443 |
| BsuTUI | ATCGAT | 1 cut(s) | 226 |
| BtgI | CCRYGG | 1 cut(s) | 444 |
| BtgZI | GCGATG | 2 cut(s) | 181, 192 |
| BtsCI | GGATG | 3 cut(s) | 18, 55, 235 |
| BtuMI | TCGCGA | 2 cut(s) | 166, 177 |
| BveI | ACCTGC | 1 cut(s) | 93 |
| Cac8I | GCNNGC | 2 cut(s) | 202, 441 |
| CfoI | GCGC | 5 cut(s) | 40, 90, 141, 202, 204 |
| Cfr13I | GGNCC | 2 cut(s) | 72, 441 |
| ClaI | ATCGAT | 1 cut(s) | 226 |
| CseI | GACGC | 2 cut(s) | 221, 255 |
| Csp6I | GTAC | 1 cut(s) | 45 |
| CviAII | CATG | 2 cut(s) | 352, 362 |
| CviJI | RGCY | 8 cut(s) | 188, 283, 323, 404, 409, 420, 443, 450 |
| CviKI_1 | RGCY | 8 cut(s) | 188, 283, 323, 404, 409, 420, 443, 450 |
| CviQI | GTAC | 1 cut(s) | 45 |
| DpnI | GATC | 4 cut(s) | 118, 218, 301, 393 |
| DpnII | GATC | 4 cut(s) | 116, 216, 299, 391 |
| Eam1104I | CTCTTC | 1 cut(s) | 2 |
| EarI | CTCTTC | 1 cut(s) | 2 |
| Eco130I | CCWWGG | 3 cut(s) | 91, 208, 308 |
| Eco31I | GGTCTC | 1 cut(s) | 200 |
| Eco47I | GGWCC | 1 cut(s) | 72 |
| Eco88I | CYCGRG | 2 cut(s) | 120, 324 |
| EcoT14I | CCWWGG | 3 cut(s) | 91, 208, 308 |
| ErhI | CCWWGG | 3 cut(s) | 91, 208, 308 |
| Esp3I | CGTCTC | 1 cut(s) | 139 |
| FaeI | CATG | 2 cut(s) | 355, 365 |
| FaiI | YATR | 4 cut(s) | 244, 246, 353, 363 |
| FaqI | GGGAC | 1 cut(s) | 84 |
| FatI | CATG | 2 cut(s) | 351, 361 |
| FauI | CCCGC | 2 cut(s) | 309, 432 |
| FauNDI | CATATG | 1 cut(s) | 244 |
| Fnu4HI | GCNGC | 3 cut(s) | 281, 284, 410 |
| FokI | GGATG | 3 cut(s) | 25, 62, 222 |
| Fsp4HI | GCNGC | 3 cut(s) | 281, 284, 410 |
| FspBI | CTAG | 2 cut(s) | 209, 309 |
| GlaI | GCGC | 5 cut(s) | 39, 89, 140, 201, 203 |
| GluI | GCNGC | 3 cut(s) | 281, 284, 410 |
| HaeIII | GGCC | 1 cut(s) | 443 |
| HapII | CCGG | 4 cut(s) | 41, 103, 189, 406 |
| HgaI | GACGC | 2 cut(s) | 221, 255 |
| HhaI | GCGC | 5 cut(s) | 40, 90, 141, 202, 204 |
| Hin1I | GRCGYC | 1 cut(s) | 232 |
| Hin1II | CATG | 2 cut(s) | 355, 365 |
| Hin6I | GCGC | 5 cut(s) | 38, 88, 139, 200, 202 |
| HinP1I | GCGC | 5 cut(s) | 38, 88, 139, 200, 202 |
| HinfI | GANTC | 3 cut(s) | 18, 97, 382 |
| HpaII | CCGG | 4 cut(s) | 41, 103, 189, 406 |
| HphI | GGTGA | 2 cut(s) | 73, 391 |
| Hpy166II | GTNNAC | 2 cut(s) | 150, 349 |
| Hpy188I | TCNGA | 1 cut(s) | 30 |
| Hpy188III | TCNNGA | 5 cut(s) | 165, 176, 326, 369, 395 |
| Hpy8I | GTNNAC | 2 cut(s) | 150, 349 |
| HpyAV | CCTTC | 1 cut(s) | 249 |
| HpyCH4IV | ACGT | 3 cut(s) | 34, 132, 183 |
| HpyCH4V | TGCA | 1 cut(s) | 412 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 210, 280 |
| HpySE526I | ACGT | 3 cut(s) | 34, 132, 183 |
| Hsp92I | GRCGYC | 1 cut(s) | 232 |
| Hsp92II | CATG | 2 cut(s) | 355, 365 |
| HspAI | GCGC | 5 cut(s) | 38, 88, 139, 200, 202 |
| Kzo9I | GATC | 4 cut(s) | 116, 216, 299, 391 |
| LmnI | GCTCC | 3 cut(s) | 146, 417, 436 |
| LpnPI | CCDG | 6 cut(s) | 54, 98, 116, 202, 398, 419 |
| Lsp1109I | GCAGC | 2 cut(s) | 292, 396 |
| MaeI | CTAG | 2 cut(s) | 209, 309 |
| MaeII | ACGT | 3 cut(s) | 34, 132, 183 |
| MaeIII | GTNAC | 1 cut(s) | 379 |
| MalI | GATC | 4 cut(s) | 118, 218, 301, 393 |
| MbiI | CCGCTC | 1 cut(s) | 439 |
| MboI | GATC | 4 cut(s) | 116, 216, 299, 391 |
| MboII | GAAGA | 3 cut(s) | 19, 76, 309 |
| MflI | RGATCY | 2 cut(s) | 116, 299 |
| MluCI | AATT | 1 cut(s) | 355 |
| MlyI | GAGTC | 2 cut(s) | 106, 376 |
| MmeI | TCCRAC | 1 cut(s) | 8 |
| MnlI | CCTC | 7 cut(s) | 3, 46, 88, 313, 324, 333, 426 |
| MspI | CCGG | 4 cut(s) | 41, 103, 189, 406 |
| MspR9I | CCNGG | 4 cut(s) | 42, 103, 190, 406 |
| Mva1269I | GAATGC | 1 cut(s) | 429 |
| MvnI | CGCG | 5 cut(s) | 139, 166, 177, 200, 202 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 210, 280 |
| NciI | CCSGG | 4 cut(s) | 42, 103, 190, 406 |
| NdeI | CATATG | 1 cut(s) | 244 |
| NdeII | GATC | 4 cut(s) | 116, 216, 299, 391 |
| NlaIII | CATG | 2 cut(s) | 355, 365 |
| NlaIV | GGNNCC | 1 cut(s) | 419 |
| NmuCI | GTSAC | 1 cut(s) | 379 |
| NruI | TCGCGA | 2 cut(s) | 166, 177 |
| PaqCI | CACCTGC | 1 cut(s) | 93 |
| PauI | GCGCGC | 1 cut(s) | 200 |
| PctI | GAATGC | 1 cut(s) | 429 |
| PfeI | GAWTC | 1 cut(s) | 18 |
| PkrI | GCNGC | 3 cut(s) | 282, 285, 411 |
| PleI | GAGTC | 2 cut(s) | 105, 376 |
| PpsI | GAGTC | 2 cut(s) | 105, 376 |
| Ppu21I | YACGTR | 1 cut(s) | 35 |
| PspN4I | GGNNCC | 1 cut(s) | 419 |
| PspPI | GGNCC | 2 cut(s) | 72, 441 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 341, 373 |
| PstI | CTGCAG | 1 cut(s) | 414 |
| PsuI | RGATCY | 2 cut(s) | 116, 299 |
| PteI | GCGCGC | 1 cut(s) | 200 |
| RruI | TCGCGA | 2 cut(s) | 166, 177 |
| RsaI | GTAC | 1 cut(s) | 46 |
| RsaNI | GTAC | 1 cut(s) | 45 |
| SatI | GCNGC | 3 cut(s) | 281, 284, 410 |
| Sau3AI | GATC | 4 cut(s) | 116, 216, 299, 391 |
| Sau96I | GGNCC | 2 cut(s) | 72, 441 |
| SchI | GAGTC | 2 cut(s) | 106, 376 |
| ScrFI | CCNGG | 4 cut(s) | 42, 103, 190, 406 |
| SetI | ASST | 7 cut(s) | 37, 57, 80, 87, 135, 186, 335 |
| SfcI | CTRYAG | 1 cut(s) | 410 |
| SinI | GGWCC | 1 cut(s) | 72 |
| Sse9I | AATT | 1 cut(s) | 355 |
| SsiI | CCGC | 6 cut(s) | 260, 278, 284, 294, 316, 439 |
| SspMI | CTAG | 2 cut(s) | 209, 309 |
| StyD4I | CCNGG | 4 cut(s) | 40, 101, 188, 404 |
| StyI | CCWWGG | 3 cut(s) | 91, 208, 308 |
| TaiI | ACGT | 3 cut(s) | 37, 135, 186 |
| TaqI | TCGA | 4 cut(s) | 21, 219, 226, 335 |
| TasI | AATT | 1 cut(s) | 355 |
| TauI | GCSGC | 1 cut(s) | 286 |
| TfiI | GAWTC | 1 cut(s) | 18 |
| TseFI | GTSAC | 1 cut(s) | 379 |
| TseI | GCWGC | 2 cut(s) | 280, 409 |
| Tsp45I | GTSAC | 1 cut(s) | 379 |
| TspDTI | ATGAA | 2 cut(s) | 231, 368 |
| TspGWI | ACGGA | 2 cut(s) | 62, 133 |
| VpaK11BI | GGWCC | 1 cut(s) | 72 |
| XmaJI | CCTAGG | 2 cut(s) | 208, 308 |
| XspI | CTAG | 2 cut(s) | 209, 309 |