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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 36 |
| AciI | CCGC | 1 cut(s) | 181 |
| AfaI | GTAC | 2 cut(s) | 94, 145 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 26 |
| AflIII | ACRYGT | 1 cut(s) | 55 |
| AgsI | TTSAA | 1 cut(s) | 230 |
| AjnI | CCWGG | 1 cut(s) | 100 |
| AluBI | AGCT | 2 cut(s) | 45, 128 |
| AluI | AGCT | 2 cut(s) | 45, 128 |
| Alw21I | GWGCWC | 1 cut(s) | 142 |
| Alw26I | GTCTC | 1 cut(s) | 9 |
| Alw44I | GTGCAC | 1 cut(s) | 138 |
| Ama87I | CYCGRG | 1 cut(s) | 120 |
| AoxI | GGCC | 1 cut(s) | 98 |
| ApaLI | GTGCAC | 1 cut(s) | 138 |
| AspS9I | GGNCC | 4 cut(s) | 98, 117, 178, 305 |
| AsuHPI | GGTGA | 3 cut(s) | 62, 204, 303 |
| AvaI | CYCGRG | 1 cut(s) | 120 |
| AvaII | GGWCC | 3 cut(s) | 117, 178, 305 |
| BaeGI | GKGCMC | 1 cut(s) | 142 |
| BanII | GRGCYC | 1 cut(s) | 70 |
| Bbv12I | GWGCWC | 1 cut(s) | 142 |
| BbvCI | CCTCAGC | 1 cut(s) | 78 |
| BccI | CCATC | 3 cut(s) | 107, 143, 316 |
| BciT130I | CCWGG | 1 cut(s) | 102 |
| BcoDI | GTCTC | 1 cut(s) | 9 |
| BfmI | CTRYAG | 1 cut(s) | 327 |
| BglII | AGATCT | 1 cut(s) | 367 |
| Bme1390I | CCNGG | 1 cut(s) | 102 |
| Bme18I | GGWCC | 3 cut(s) | 117, 178, 305 |
| BmeT110I | CYCGRG | 1 cut(s) | 120 |
| BmgT120I | GGNCC | 4 cut(s) | 98, 117, 178, 305 |
| BmiI | GGNNCC | 3 cut(s) | 118, 119, 306 |
| BmrFI | CCNGG | 1 cut(s) | 102 |
| BmrI | ACTGGG | 1 cut(s) | 105 |
| BmuI | ACTGGG | 1 cut(s) | 105 |
| Bpu10I | CCTNAGC | 2 cut(s) | 69, 78 |
| BsaAI | YACGTR | 1 cut(s) | 143 |
| BsaI | GGTCTC | 1 cut(s) | 9 |
| BsaJI | CCNNGG | 1 cut(s) | 218 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 101, 131 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 26 |
| Bse1I | ACTGG | 3 cut(s) | 10, 100, 364 |
| Bse3DI | GCAATG | 1 cut(s) | 292 |
| BseBI | CCWGG | 1 cut(s) | 102 |
| BseDI | CCNNGG | 1 cut(s) | 218 |
| BseGI | GGATG | 1 cut(s) | 118 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 26 |
| BseMI | GCAATG | 1 cut(s) | 292 |
| BseMII | CTCAG | 2 cut(s) | 69, 83 |
| BseNI | ACTGG | 3 cut(s) | 10, 100, 364 |
| BseRI | GAGGAG | 1 cut(s) | 122 |
| BseSI | GKGCMC | 1 cut(s) | 142 |
| BseYI | CCCAGC | 1 cut(s) | 128 |
| Bsh1236I | CGCG | 1 cut(s) | 36 |
| BshFI | GGCC | 1 cut(s) | 100 |
| BsiHKAI | GWGCWC | 1 cut(s) | 142 |
| BsiHKCI | CYCGRG | 1 cut(s) | 120 |
| BslFI | GGGAC | 3 cut(s) | 103, 145, 318 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 26 |
| BsmAI | GTCTC | 1 cut(s) | 9 |
| BsmFI | GGGAC | 3 cut(s) | 103, 145, 318 |
| BsnI | GGCC | 1 cut(s) | 100 |
| Bso31I | GGTCTC | 1 cut(s) | 9 |
| BsoBI | CYCGRG | 1 cut(s) | 120 |
| Bsp1286I | GDGCHC | 2 cut(s) | 70, 142 |
| Bsp143I | GATC | 1 cut(s) | 367 |
| Bsp19I | CCATGG | 1 cut(s) | 218 |
| Bsp68I | TCGCGA | 1 cut(s) | 36 |
| BspACI | CCGC | 1 cut(s) | 181 |
| BspANI | GGCC | 1 cut(s) | 100 |
| BspCNI | CTCAG | 2 cut(s) | 70, 82 |
| BspFNI | CGCG | 1 cut(s) | 36 |
| BspLI | GGNNCC | 3 cut(s) | 118, 119, 306 |
| BspTNI | GGTCTC | 1 cut(s) | 9 |
| BsrDI | GCAATG | 1 cut(s) | 292 |
| BsrI | ACTGG | 3 cut(s) | 10, 100, 364 |
| BssECI | CCNNGG | 1 cut(s) | 218 |
| BssMI | GATC | 1 cut(s) | 367 |
| BssT1I | CCWWGG | 1 cut(s) | 218 |
| Bst2UI | CCWGG | 1 cut(s) | 102 |
| BstBAI | YACGTR | 1 cut(s) | 143 |
| BstC8I | GCNNGC | 1 cut(s) | 38 |
| BstDEI | CTNAG | 2 cut(s) | 69, 78 |
| BstDSI | CCRYGG | 1 cut(s) | 218 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 24 |
| BstF5I | GGATG | 1 cut(s) | 118 |
| BstFNI | CGCG | 1 cut(s) | 36 |
| BstKTI | GATC | 1 cut(s) | 370 |
| BstMAI | GTCTC | 1 cut(s) | 9 |
| BstMBI | GATC | 1 cut(s) | 367 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 42, 74, 83, 262 |
| BstNI | CCWGG | 1 cut(s) | 102 |
| BstSCI | CCNGG | 1 cut(s) | 100 |
| BstSFI | CTRYAG | 1 cut(s) | 327 |
| BstSLI | GKGCMC | 1 cut(s) | 142 |
| BstUI | CGCG | 1 cut(s) | 36 |
| BstX2I | RGATCY | 1 cut(s) | 367 |
| BstYI | RGATCY | 1 cut(s) | 367 |
| BsuRI | GGCC | 1 cut(s) | 100 |
| BtgI | CCRYGG | 1 cut(s) | 218 |
| BtsCI | GGATG | 1 cut(s) | 118 |
| BtsI | GCAGTG | 1 cut(s) | 190 |
| BtsIMutI | CAGTG | 1 cut(s) | 190 |
| BtuMI | TCGCGA | 1 cut(s) | 36 |
| Cac8I | GCNNGC | 1 cut(s) | 38 |
| Cfr13I | GGNCC | 4 cut(s) | 98, 117, 178, 305 |
| CpoI | CGGWCCG | 1 cut(s) | 178 |
| Csp6I | GTAC | 2 cut(s) | 93, 144 |
| CspI | CGGWCCG | 1 cut(s) | 178 |
| CviAII | CATG | 1 cut(s) | 219 |
| CviJI | RGCY | 5 cut(s) | 45, 68, 77, 100, 128 |
| CviKI_1 | RGCY | 5 cut(s) | 45, 68, 77, 100, 128 |
| CviQI | GTAC | 2 cut(s) | 93, 144 |
| DdeI | CTNAG | 2 cut(s) | 69, 78 |
| DpnI | GATC | 1 cut(s) | 369 |
| DpnII | GATC | 1 cut(s) | 367 |
| Eco130I | CCWWGG | 1 cut(s) | 218 |
| Eco24I | GRGCYC | 1 cut(s) | 70 |
| Eco31I | GGTCTC | 1 cut(s) | 9 |
| Eco47I | GGWCC | 3 cut(s) | 117, 178, 305 |
| Eco88I | CYCGRG | 1 cut(s) | 120 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 24 |
| EcoO109I | RGGNCCY | 1 cut(s) | 117 |
| EcoRII | CCWGG | 1 cut(s) | 100 |
| EcoT14I | CCWWGG | 1 cut(s) | 218 |
| EcoT38I | GRGCYC | 1 cut(s) | 70 |
| ErhI | CCWWGG | 1 cut(s) | 218 |
| FaeI | CATG | 1 cut(s) | 222 |
| FaiI | YATR | 6 cut(s) | 197, 220, 242, 272, 279, 335 |
| FaqI | GGGAC | 3 cut(s) | 103, 145, 318 |
| FatI | CATG | 1 cut(s) | 218 |
| FokI | GGATG | 1 cut(s) | 125 |
| FriOI | GRGCYC | 1 cut(s) | 70 |
| GsaI | CCCAGC | 1 cut(s) | 132 |
| HaeIII | GGCC | 1 cut(s) | 100 |
| Hin1II | CATG | 1 cut(s) | 222 |
| HincII | GTYRAC | 1 cut(s) | 206 |
| HindII | GTYRAC | 1 cut(s) | 206 |
| HphI | GGTGA | 3 cut(s) | 62, 204, 303 |
| Hpy166II | GTNNAC | 3 cut(s) | 53, 140, 206 |
| Hpy188I | TCNGA | 2 cut(s) | 168, 178 |
| Hpy188III | TCNNGA | 3 cut(s) | 35, 120, 365 |
| Hpy8I | GTNNAC | 3 cut(s) | 53, 140, 206 |
| HpyCH4IV | ACGT | 3 cut(s) | 55, 142, 202 |
| HpyCH4V | TGCA | 5 cut(s) | 140, 265, 277, 297, 321 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 42, 74, 83, 262 |
| HpyF3I | CTNAG | 2 cut(s) | 69, 78 |
| HpySE526I | ACGT | 3 cut(s) | 55, 142, 202 |
| Hsp92II | CATG | 1 cut(s) | 222 |
| KflI | GGGWCCC | 1 cut(s) | 117 |
| Kzo9I | GATC | 1 cut(s) | 367 |
| LpnPI | CCDG | 7 cut(s) | 56, 81, 87, 114, 114, 177, 345 |
| MaeII | ACGT | 3 cut(s) | 55, 142, 202 |
| MalI | GATC | 1 cut(s) | 369 |
| MboI | GATC | 1 cut(s) | 367 |
| MflI | RGATCY | 1 cut(s) | 367 |
| MhlI | GDGCHC | 2 cut(s) | 70, 142 |
| MnlI | CCTC | 7 cut(s) | 20, 30, 73, 100, 103, 162, 225 |
| MslI | CAYNNNNRTG | 2 cut(s) | 217, 272 |
| MspR9I | CCNGG | 1 cut(s) | 102 |
| MvaI | CCWGG | 1 cut(s) | 102 |
| MvnI | CGCG | 1 cut(s) | 36 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 42, 74, 83, 262 |
| NcoI | CCATGG | 1 cut(s) | 218 |
| NdeII | GATC | 1 cut(s) | 367 |
| NlaIII | CATG | 1 cut(s) | 222 |
| NlaIV | GGNNCC | 3 cut(s) | 118, 119, 306 |
| NruI | TCGCGA | 1 cut(s) | 36 |
| Ppu21I | YACGTR | 1 cut(s) | 143 |
| PpuMI | RGGWCCY | 1 cut(s) | 117 |
| Psp5II | RGGWCCY | 1 cut(s) | 117 |
| Psp6I | CCWGG | 1 cut(s) | 100 |
| PspFI | CCCAGC | 1 cut(s) | 128 |
| PspGI | CCWGG | 1 cut(s) | 100 |
| PspN4I | GGNNCC | 3 cut(s) | 118, 119, 306 |
| PspPI | GGNCC | 4 cut(s) | 98, 117, 178, 305 |
| PspPPI | RGGWCCY | 1 cut(s) | 117 |
| PsuI | RGATCY | 1 cut(s) | 367 |
| RruI | TCGCGA | 1 cut(s) | 36 |
| RsaI | GTAC | 2 cut(s) | 94, 145 |
| RsaNI | GTAC | 2 cut(s) | 93, 144 |
| RseI | CAYNNNNRTG | 2 cut(s) | 217, 272 |
| Rsr2I | CGGWCCG | 1 cut(s) | 178 |
| RsrII | CGGWCCG | 1 cut(s) | 178 |
| Sau3AI | GATC | 1 cut(s) | 367 |
| Sau96I | GGNCC | 4 cut(s) | 98, 117, 178, 305 |
| ScrFI | CCNGG | 1 cut(s) | 102 |
| SduI | GDGCHC | 2 cut(s) | 70, 142 |
| SfcI | CTRYAG | 1 cut(s) | 327 |
| SinI | GGWCC | 3 cut(s) | 117, 178, 305 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 217, 272 |
| SsiI | CCGC | 1 cut(s) | 181 |
| StyD4I | CCNGG | 1 cut(s) | 100 |
| StyI | CCWWGG | 1 cut(s) | 218 |
| TaiI | ACGT | 3 cut(s) | 58, 145, 205 |
| TscAI | CASTG | 1 cut(s) | 190 |
| TspGWI | ACGGA | 1 cut(s) | 249 |
| TspRI | CASTG | 1 cut(s) | 190 |
| VneI | GTGCAC | 1 cut(s) | 138 |
| VpaK11BI | GGWCC | 3 cut(s) | 117, 178, 305 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 24 |