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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 173, 403 |
| AccBSI | CCGCTC | 2 cut(s) | 15, 84 |
| AccII | CGCG | 1 cut(s) | 150 |
| AciI | CCGC | 8 cut(s) | 15, 84, 121, 138, 177, 259, 341, 380 |
| AcyI | GRCGYC | 1 cut(s) | 404 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 265 |
| AgsI | TTSAA | 1 cut(s) | 275 |
| AluBI | AGCT | 2 cut(s) | 166, 357 |
| AluI | AGCT | 2 cut(s) | 166, 357 |
| Alw26I | GTCTC | 1 cut(s) | 220 |
| Ama87I | CYCGRG | 2 cut(s) | 95, 262 |
| AoxI | GGCC | 2 cut(s) | 92, 365 |
| ApaI | GGGCCC | 1 cut(s) | 96 |
| ApeKI | GCWGC | 1 cut(s) | 331 |
| AspLEI | GCGC | 2 cut(s) | 150, 406 |
| AspS9I | GGNCC | 3 cut(s) | 42, 92, 93 |
| AsuC2I | CCSGG | 2 cut(s) | 96, 97 |
| AsuHPI | GGTGA | 1 cut(s) | 385 |
| AvaI | CYCGRG | 2 cut(s) | 95, 262 |
| AvaII | GGWCC | 1 cut(s) | 42 |
| BaeGI | GKGCMC | 2 cut(s) | 21, 96 |
| BanI | GGYRCC | 2 cut(s) | 173, 403 |
| BanII | GRGCYC | 1 cut(s) | 96 |
| BauI | CACGAG | 1 cut(s) | 22 |
| BbvI | GCAGC | 1 cut(s) | 343 |
| BcnI | CCSGG | 2 cut(s) | 96, 97 |
| BcoDI | GTCTC | 1 cut(s) | 220 |
| BfaI | CTAG | 1 cut(s) | 345 |
| BfoI | RGCGCY | 1 cut(s) | 407 |
| BisI | GCNGC | 3 cut(s) | 177, 332, 342 |
| BlsI | GCNGC | 3 cut(s) | 178, 333, 343 |
| Bme1390I | CCNGG | 2 cut(s) | 96, 97 |
| Bme18I | GGWCC | 1 cut(s) | 42 |
| BmeT110I | CYCGRG | 2 cut(s) | 95, 262 |
| BmgT120I | GGNCC | 3 cut(s) | 42, 92, 93 |
| BmiI | GGNNCC | 4 cut(s) | 94, 175, 195, 405 |
| BmrFI | CCNGG | 2 cut(s) | 96, 97 |
| BmsI | GCATC | 2 cut(s) | 24, 126 |
| BoxI | GACNNNNGTC | 1 cut(s) | 47 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 178, 210 |
| BpuEI | CTTGAG | 2 cut(s) | 337, 343 |
| BpuMI | CCSGG | 2 cut(s) | 96, 97 |
| BsaBI | GATNNNNATC | 1 cut(s) | 390 |
| BsaHI | GRCGYC | 1 cut(s) | 404 |
| BsaJI | CCNNGG | 5 cut(s) | 45, 95, 180, 263, 368 |
| BsaWI | WCCGGW | 1 cut(s) | 396 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 124, 154 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 265 |
| Bse8I | GATNNNNATC | 1 cut(s) | 390 |
| BseDI | CCNNGG | 5 cut(s) | 45, 95, 180, 263, 368 |
| BseGI | GGATG | 2 cut(s) | 39, 117 |
| BseJI | GATNNNNATC | 1 cut(s) | 390 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 265 |
| BseSI | GKGCMC | 2 cut(s) | 21, 96 |
| BseXI | GCAGC | 1 cut(s) | 343 |
| Bsh1236I | CGCG | 1 cut(s) | 150 |
| Bsh1285I | CGRYCG | 3 cut(s) | 142, 208, 401 |
| BshFI | GGCC | 2 cut(s) | 94, 367 |
| BshNI | GGYRCC | 2 cut(s) | 173, 403 |
| BsiEI | CGRYCG | 3 cut(s) | 142, 208, 401 |
| BsiHKCI | CYCGRG | 2 cut(s) | 95, 262 |
| BsiSI | CCGG | 2 cut(s) | 96, 397 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 265 |
| BsmAI | GTCTC | 1 cut(s) | 220 |
| BsmI | GAATGC | 1 cut(s) | 65 |
| BsnI | GGCC | 2 cut(s) | 94, 367 |
| BsoBI | CYCGRG | 2 cut(s) | 95, 262 |
| Bsp120I | GGGCCC | 1 cut(s) | 92 |
| Bsp1286I | GDGCHC | 2 cut(s) | 21, 96 |
| Bsp143I | GATC | 1 cut(s) | 205 |
| BspACI | CCGC | 8 cut(s) | 15, 84, 121, 138, 177, 259, 341, 380 |
| BspANI | GGCC | 2 cut(s) | 94, 367 |
| BspFNI | CGCG | 1 cut(s) | 150 |
| BspLI | GGNNCC | 4 cut(s) | 94, 175, 195, 405 |
| BspQI | GCTCTTC | 1 cut(s) | 107 |
| BspT107I | GGYRCC | 2 cut(s) | 173, 403 |
| BsrBI | CCGCTC | 2 cut(s) | 15, 84 |
| BssECI | CCNNGG | 5 cut(s) | 45, 95, 180, 263, 368 |
| BssMI | GATC | 1 cut(s) | 205 |
| BssNI | GRCGYC | 1 cut(s) | 404 |
| BssSI | CACGAG | 1 cut(s) | 22 |
| BssT1I | CCWWGG | 2 cut(s) | 180, 368 |
| Bst2BI | CACGAG | 1 cut(s) | 22 |
| Bst6I | CTCTTC | 1 cut(s) | 107 |
| BstACI | GRCGYC | 1 cut(s) | 404 |
| BstC8I | GCNNGC | 1 cut(s) | 17 |
| BstF5I | GGATG | 2 cut(s) | 39, 117 |
| BstFNI | CGCG | 1 cut(s) | 150 |
| BstH2I | RGCGCY | 1 cut(s) | 407 |
| BstHHI | GCGC | 2 cut(s) | 150, 406 |
| BstKTI | GATC | 1 cut(s) | 208 |
| BstMAI | GTCTC | 1 cut(s) | 220 |
| BstMBI | GATC | 1 cut(s) | 205 |
| BstMCI | CGRYCG | 3 cut(s) | 142, 208, 401 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 47 |
| BstSCI | CCNGG | 2 cut(s) | 94, 95 |
| BstSLI | GKGCMC | 2 cut(s) | 21, 96 |
| BstUI | CGCG | 1 cut(s) | 150 |
| BstV1I | GCAGC | 1 cut(s) | 343 |
| BsuRI | GGCC | 2 cut(s) | 94, 367 |
| BtgZI | GCGATG | 1 cut(s) | 165 |
| BtsCI | GGATG | 2 cut(s) | 39, 117 |
| Cac8I | GCNNGC | 1 cut(s) | 17 |
| CfoI | GCGC | 2 cut(s) | 150, 406 |
| Cfr13I | GGNCC | 3 cut(s) | 42, 92, 93 |
| Cfr9I | CCCGGG | 1 cut(s) | 95 |
| CviJI | RGCY | 7 cut(s) | 76, 94, 166, 194, 344, 357, 367 |
| CviKI_1 | RGCY | 7 cut(s) | 76, 94, 166, 194, 344, 357, 367 |
| DinI | GGCGCC | 1 cut(s) | 405 |
| DpnI | GATC | 1 cut(s) | 207 |
| DpnII | GATC | 1 cut(s) | 205 |
| Eam1104I | CTCTTC | 1 cut(s) | 107 |
| EarI | CTCTTC | 1 cut(s) | 107 |
| Eco130I | CCWWGG | 2 cut(s) | 180, 368 |
| Eco24I | GRGCYC | 1 cut(s) | 96 |
| Eco47I | GGWCC | 1 cut(s) | 42 |
| Eco88I | CYCGRG | 2 cut(s) | 95, 262 |
| EcoO109I | RGGNCCY | 1 cut(s) | 92 |
| EcoT14I | CCWWGG | 2 cut(s) | 180, 368 |
| EcoT38I | GRGCYC | 1 cut(s) | 96 |
| EgeI | GGCGCC | 1 cut(s) | 405 |
| EheI | GGCGCC | 1 cut(s) | 405 |
| ErhI | CCWWGG | 2 cut(s) | 180, 368 |
| FaiI | YATR | 1 cut(s) | 71 |
| FauI | CCCGC | 2 cut(s) | 8, 77 |
| Fnu4HI | GCNGC | 3 cut(s) | 177, 332, 342 |
| FokI | GGATG | 2 cut(s) | 46, 104 |
| FriOI | GRGCYC | 1 cut(s) | 96 |
| Fsp4HI | GCNGC | 3 cut(s) | 177, 332, 342 |
| FspBI | CTAG | 1 cut(s) | 345 |
| GlaI | GCGC | 2 cut(s) | 149, 405 |
| GluI | GCNGC | 3 cut(s) | 177, 332, 342 |
| HaeII | RGCGCY | 1 cut(s) | 407 |
| HaeIII | GGCC | 2 cut(s) | 94, 367 |
| HapII | CCGG | 2 cut(s) | 96, 397 |
| HhaI | GCGC | 2 cut(s) | 150, 406 |
| Hin1I | GRCGYC | 1 cut(s) | 404 |
| Hin6I | GCGC | 2 cut(s) | 148, 404 |
| HinP1I | GCGC | 2 cut(s) | 148, 404 |
| HincII | GTYRAC | 1 cut(s) | 256 |
| HindII | GTYRAC | 1 cut(s) | 256 |
| HinfI | GANTC | 1 cut(s) | 350 |
| HpaII | CCGG | 2 cut(s) | 96, 397 |
| HphI | GGTGA | 1 cut(s) | 385 |
| Hpy166II | GTNNAC | 1 cut(s) | 256 |
| Hpy188III | TCNNGA | 4 cut(s) | 6, 143, 203, 360 |
| Hpy8I | GTNNAC | 1 cut(s) | 256 |
| HpyAV | CCTTC | 3 cut(s) | 310, 357, 370 |
| HpyCH4V | TGCA | 1 cut(s) | 244 |
| Hsp92I | GRCGYC | 1 cut(s) | 404 |
| HspAI | GCGC | 2 cut(s) | 148, 404 |
| KasI | GGCGCC | 1 cut(s) | 403 |
| Kzo9I | GATC | 1 cut(s) | 205 |
| LguI | GCTCTTC | 1 cut(s) | 107 |
| LmnI | GCTCC | 7 cut(s) | 12, 81, 145, 163, 199, 294, 304 |
| LpnPI | CCDG | 2 cut(s) | 109, 410 |
| Lsp1109I | GCAGC | 1 cut(s) | 343 |
| LweI | GCATC | 2 cut(s) | 24, 126 |
| MaeI | CTAG | 1 cut(s) | 345 |
| MaeIII | GTNAC | 1 cut(s) | 347 |
| MalI | GATC | 1 cut(s) | 207 |
| MbiI | CCGCTC | 2 cut(s) | 15, 84 |
| MboI | GATC | 1 cut(s) | 205 |
| MboII | GAAGA | 1 cut(s) | 124 |
| MfeI | CAATTG | 1 cut(s) | 308 |
| MhlI | GDGCHC | 2 cut(s) | 21, 96 |
| MluCI | AATT | 2 cut(s) | 127, 308 |
| Mly113I | GGCGCC | 1 cut(s) | 404 |
| MlyI | GAGTC | 1 cut(s) | 344 |
| MmeI | TCCRAC | 3 cut(s) | 141, 201, 282 |
| MnlI | CCTC | 8 cut(s) | 40, 46, 58, 66, 128, 258, 284, 306 |
| MseI | TTAA | 1 cut(s) | 412 |
| MspI | CCGG | 2 cut(s) | 96, 397 |
| MspR9I | CCNGG | 2 cut(s) | 96, 97 |
| MunI | CAATTG | 1 cut(s) | 308 |
| Mva1269I | GAATGC | 1 cut(s) | 65 |
| MvnI | CGCG | 1 cut(s) | 150 |
| NarI | GGCGCC | 1 cut(s) | 404 |
| NciI | CCSGG | 2 cut(s) | 96, 97 |
| NdeII | GATC | 1 cut(s) | 205 |
| NlaIV | GGNNCC | 4 cut(s) | 94, 175, 195, 405 |
| NmuCI | GTSAC | 1 cut(s) | 347 |
| PciSI | GCTCTTC | 1 cut(s) | 107 |
| PctI | GAATGC | 1 cut(s) | 65 |
| PkrI | GCNGC | 3 cut(s) | 178, 333, 343 |
| Ple19I | CGATCG | 1 cut(s) | 208 |
| PleI | GAGTC | 1 cut(s) | 344 |
| PluTI | GGCGCC | 1 cut(s) | 407 |
| PpsI | GAGTC | 1 cut(s) | 344 |
| PshAI | GACNNNNGTC | 1 cut(s) | 47 |
| PspN4I | GGNNCC | 4 cut(s) | 94, 175, 195, 405 |
| PspOMI | GGGCCC | 1 cut(s) | 92 |
| PspPI | GGNCC | 3 cut(s) | 42, 92, 93 |
| PvuI | CGATCG | 1 cut(s) | 208 |
| SapI | GCTCTTC | 1 cut(s) | 107 |
| SaqAI | TTAA | 1 cut(s) | 412 |
| SatI | GCNGC | 3 cut(s) | 177, 332, 342 |
| Sau3AI | GATC | 1 cut(s) | 205 |
| Sau96I | GGNCC | 3 cut(s) | 42, 92, 93 |
| SchI | GAGTC | 1 cut(s) | 344 |
| ScrFI | CCNGG | 2 cut(s) | 96, 97 |
| SduI | GDGCHC | 2 cut(s) | 21, 96 |
| SetI | ASST | 5 cut(s) | 51, 57, 110, 168, 359 |
| SfaNI | GCATC | 2 cut(s) | 24, 126 |
| SfoI | GGCGCC | 1 cut(s) | 405 |
| SinI | GGWCC | 1 cut(s) | 42 |
| SmaI | CCCGGG | 1 cut(s) | 97 |
| SmlI | CTYRAG | 2 cut(s) | 352, 358 |
| SmoI | CTYRAG | 2 cut(s) | 352, 358 |
| Sse9I | AATT | 2 cut(s) | 127, 308 |
| SsiI | CCGC | 8 cut(s) | 15, 84, 121, 138, 177, 259, 341, 380 |
| SspDI | GGCGCC | 1 cut(s) | 403 |
| SspMI | CTAG | 1 cut(s) | 345 |
| StyD4I | CCNGG | 2 cut(s) | 94, 95 |
| StyI | CCWWGG | 2 cut(s) | 180, 368 |
| TaqI | TCGA | 5 cut(s) | 5, 51, 110, 156, 234 |
| TaqII | GACCGA | 1 cut(s) | 59 |
| TasI | AATT | 2 cut(s) | 127, 308 |
| TauI | GCSGC | 2 cut(s) | 179, 344 |
| Tru1I | TTAA | 1 cut(s) | 412 |
| Tru9I | TTAA | 1 cut(s) | 412 |
| TseFI | GTSAC | 1 cut(s) | 347 |
| TseI | GCWGC | 1 cut(s) | 331 |
| Tsp45I | GTSAC | 1 cut(s) | 347 |
| TspMI | CCCGGG | 1 cut(s) | 95 |
| VpaK11BI | GGWCC | 1 cut(s) | 42 |
| XmaI | CCCGGG | 1 cut(s) | 95 |
| XspI | CTAG | 1 cut(s) | 345 |