Rh3DG280300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000075
Physical Location & Seq
Reverse (-)
28470587 .. 28472160
1574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG280300.1

Sequence Viewer

Length: 1413 bp
ATGCCTTGTGTTGCTAACTTTTTGCTTCGTTATTTTCCAGTCAAGATGCCGGAGAACAAGGGGAGAGAAAAGAACAAGAAGGATAAGAGTGTTTATGATGATATGGCAGACCTGGACCTGATTTTGGGTCTCGCCAGAGATGGGCTGGAAGCCCAGAAGCACGACGTTGGTCTGCCGTTTGGTGATCTCGTTCTTCGTGATGGGCTAGTTGACCTCCGAGTTGGTGTGGAGTTCGATGAATTTCCGACCGAGTATTTGGGTATCAACCTTGATGATCTGCACACTAAAGATACAGGGGAAATGAATGAAGAGGACGAGTTAGAAATTGAGGTGAACCTCGACTTGGAGGCTGCACGCCGAGAGCAGATTGTTCTCGGGAAGGGACAGATCTCTGCTGCCGAGAAGTTGGCTGCACTAAGGCAAGAGGAAGAGGGGGCACCGGCCCGGGAGGTTCAAGTTGAAGGTGGTGACAATACTGACACCACTTATGTGTTGGAGGTCTCGGCACCACAGAATGACGTCGGAGGTGGTCAGGGAATGATAGTGGAGGGGGCTGCTCATGTCGAGAGGACAGCGACAGCTGCCCAAAAGAAGAGAGAACTACCAAGGCTGAAGGATCTTATGAGAGGTGTTTCAGTTAGTCCACAACTTACCAAGAGGGCCAGGACCAGTGATGGTGGTCCTTCGCGTCAGTGGAGCCCTAGAGGGTCCCAACCTGGGGGATCAGAGTCTTCTCAGTCCTCCAGGTCATCCTCGCATGGTGCTGGTACTTCCACTAGCGCACAACGGAAGCGAGATTCTGCCGCTCAGAAGCTTGCCAAGAGTCTGAGGAACAGAGGTATCGAGGAAGATTGTATTCCTCAATTGGTTGCAGATCTGCGGGACCTTCCCCATATCGATACCGGTGATGAGTTGGCTAATTTTGCTGTTTCTCAGGAGAAACTGTTGAGGGCTGTTTGCATGAACTATCATACTGGTAACAGACTCAGGGCTTTGATCGAGTCCATGAATAATTTGCAGGCGGAACTGGATGCCGAGAGGACAACATTGAAAGATTATGAATCAACTGTGCAGCAAACCTTGAAGGCAAGTGATAACCTGTCCGCGAAGCTGAAGCAGGCTGAGGAAGCTCTTGCCAATGAGAAGAAAGCCGGTATTGATGGCCAGAAATATATAGAAGAGTTGGAAAAGAAAAATGAAGCCCAAGAAGAGGAGTTGAGCAGGCAAGATGTGGATCTCACTGAGTTATCAGTGCTGAGGGATAGAGTAGGGGAGCTTTCTACTCAGCTGCTCCAGCTTGAAACTCTGGAGGAGCGGCTGAGGAGCCGAGTCCAGGAGATCAGGGACTCTCGTGCTCAGGTTCGTGAGCTCTCGGGTCAGATTGCGGGTTCGCAGGAGCAGGTTGGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

470

Amino Acids

51.96

Weight (kDa)

4.94

Isoelectric Point (pI)

51.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000075)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0348161 RchiOBHm_Chr1g0367481 RchiOBHm_Chr1g0368431 RchiOBHm_Chr2g0116021 RchiOBHm_Chr2g0133961 RchiOBHm_Chr4g0390151 RchiOBHm_Chr4g0402771 RchiOBHm_Chr4g0419581 RchiOBHm_Chr5g0054351 RchiOBHm_Chr6g0278891 RchiOBHm_Chr7g0201941 RchiOBHm_Chr7g0242761
rosa_laevigata RLG00000002487 RLG00000002488 RLG00000003412 RLG00000003415 RLG00000013607 RLG00000018981 RLG00000018982 RLG00000034520 RLG00000034521
rosa_multiflora Rmu_co8024510.1_g000001 Rmu_co8121892.1_g000001 Rmu_co8133046.1_g000001 Rmu_co8158032.1_g000001 Rmu_co8181114.1_g000001 Rmu_co8202532.1_g000001 Rmu_co8331471.1_g000001 Rmu_co8340209.1_g000001 Rmu_co8359899.1_g000001 Rmu_co8433657.1_g000002 Rmu_co8436419.1_g000002 Rmu_co8458211.1_g000002 Rmu_co8458731.1_g000002 Rmu_co8466361.1_g000001 Rmu_co8474565.1_g000001 Rmu_co8474565.1_g000002 Rmu_co8482201.1_g000001 Rmu_co8491967.1_g000003 Rmu_co8498095.1_g000001 Rmu_co8513217.1_g000002 Rmu_co8518257.1_g000001 Rmu_co8520425.1_g000003 Rmu_co8521283.1_g000003 Rmu_sc0000029.1_g000029 Rmu_sc0000082.1_g000019 Rmu_sc0000147.1_g000107 Rmu_sc0000212.1_g000005 Rmu_sc0000247.1_g000030 Rmu_sc0000367.1_g000175 Rmu_sc0000433.1_g000035 Rmu_sc0000538.1_g000038 Rmu_sc0000550.1_g000010 Rmu_sc0000635.1_g000007 Rmu_sc0000650.1_g000012 Rmu_sc0000652.1_g000009 Rmu_sc0000652.1_g000010 Rmu_sc0000742.1_g000010 Rmu_sc0000750.1_g000007 Rmu_sc0000750.1_g000008 Rmu_sc0000772.1_g000018 Rmu_sc0000830.1_g000026 Rmu_sc0000859.1_g000006 Rmu_sc0001190.1_g000039 Rmu_sc0001190.1_g000050 Rmu_sc0001190.1_g000051 Rmu_sc0001205.1_g000008 Rmu_sc0001294.1_g000025 Rmu_sc0001366.1_g000010 Rmu_sc0001373.1_g000036 Rmu_sc0001423.1_g000046 Rmu_sc0001788.1_g000014 Rmu_sc0001801.1_g000016 Rmu_sc0001849.1_g000032 Rmu_sc0001967.1_g000002 Rmu_sc0002082.1_g000066 Rmu_sc0002250.1_g000013 Rmu_sc0002322.1_g000039 Rmu_sc0002371.1_g000002 Rmu_sc0002522.1_g000036 Rmu_sc0002532.1_g000048 Rmu_sc0002669.1_g000065 Rmu_sc0002669.1_g000067 Rmu_sc0002669.1_g000069 Rmu_sc0002834.1_g000007 Rmu_sc0003226.1_g000070 Rmu_sc0003260.1_g000018 Rmu_sc0003313.1_g000007 Rmu_sc0003441.1_g000018 Rmu_sc0003490.1_g000008 Rmu_sc0003705.1_g000011 Rmu_sc0003737.1_g000013 Rmu_sc0003748.1_g000020 Rmu_sc0003910.1_g000015 Rmu_sc0003919.1_g000029 Rmu_sc0003919.1_g000031 Rmu_sc0004037.1_g000012 Rmu_sc0004099.1_g000003 Rmu_sc0004122.1_g000013 Rmu_sc0004402.1_g000013 Rmu_sc0004646.1_g000035 Rmu_sc0004688.1_g000024 Rmu_sc0004823.1_g000046 Rmu_sc0004869.1_g000003 Rmu_sc0004869.1_g000004 Rmu_sc0005132.1_g000035 Rmu_sc0005190.1_g000001 Rmu_sc0005229.1_g000005 Rmu_sc0005229.1_g000023 Rmu_sc0005363.1_g000034 Rmu_sc0005537.1_g000006 Rmu_sc0005657.1_g000024 Rmu_sc0005856.1_g000011 Rmu_sc0005856.1_g000012 Rmu_sc0005953.1_g000007 Rmu_sc0005971.1_g000015 Rmu_sc0006287.1_g000004 Rmu_sc0006315.1_g000014 Rmu_sc0006518.1_g000003 Rmu_sc0006695.1_g000066 Rmu_sc0006803.1_g000056 Rmu_sc0006822.1_g000002 Rmu_sc0006926.1_g000011 Rmu_sc0007560.1_g000008 Rmu_sc0007582.1_g000005 Rmu_sc0007618.1_g000025 Rmu_sc0007647.1_g000004 Rmu_sc0007656.1_g000013 Rmu_sc0007877.1_g000011 Rmu_sc0008528.1_g000005 Rmu_sc0008528.1_g000006 Rmu_sc0008749.1_g000004 Rmu_sc0008989.1_g000003 Rmu_sc0009120.1_g000010 Rmu_sc0009663.1_g000009 Rmu_sc0010035.1_g000001 Rmu_sc0010160.1_g000010 Rmu_sc0010160.1_g000011 Rmu_sc0010953.1_g000004 Rmu_sc0011008.1_g000006 Rmu_sc0011452.1_g000009 Rmu_sc0012746.1_g000014 Rmu_sc0013612.1_g000017 Rmu_sc0013951.1_g000011 Rmu_sc0014162.1_g000009 Rmu_sc0014162.1_g000010 Rmu_sc0016149.1_g000003 Rmu_sc0016418.1_g000008 Rmu_sc0016418.1_g000009 Rmu_sc0017353.1_g000001 Rmu_sc0017353.1_g000002 Rmu_sc0018537.1_g000012 Rmu_sc0019739.1_g000003 Rmu_sc0019739.1_g000004 Rmu_sc0020186.1_g000016 Rmu_sc0021611.1_g000001 Rmu_sc0022755.1_g000003 Rmu_sc0024226.1_g000006 Rmu_sc0025769.1_g000004 Rmu_sc0025769.1_g000005 Rmu_sc0030235.1_g000004 Rmu_sc0035508.1_g000007 Rmu_sc0036413.1_g000001 Rmu_sc0037646.1_g000001 Rmu_sc0037646.1_g000002 Rmu_sc0037647.1_g000001 Rmu_sc0037647.1_g000002 Rmu_sc0037678.1_g000001 Rmu_ssc0000072.1_g000010 Rmu_ssc0000116.1_g000041 Rmu_ssc0000127.1_g000018 Rmu_ssc0000175.1_g000018 Rmu_ssc0000175.1_g000019 Rmu_ssc0000175.1_g000020 Rmu_ssc0000197.1_g000037 Rmu_ssc0000213.1_g000051 Rmu_ssc0000359.1_g000008 Rmu_ssc0000392.1_g000019
rosa_roxburghii Rroxscaffold_154G00447930 Rroxscaffold_1G00000570 Rroxscaffold_1G00009890 Rroxscaffold_1G00012210 Rroxscaffold_1G00012960 Rroxscaffold_1G00014650 Rroxscaffold_1G00014660 Rroxscaffold_1G00014670 Rroxscaffold_1G00022880 Rroxscaffold_1G00024640 Rroxscaffold_1G00024650 Rroxscaffold_1G00025670 Rroxscaffold_1G00025680 Rroxscaffold_1G00025690 Rroxscaffold_1G00030660 Rroxscaffold_1G00031340 Rroxscaffold_1G00031350 Rroxscaffold_2G00103100 Rroxscaffold_2G00103120 Rroxscaffold_2G00107390 Rroxscaffold_2G00108940 Rroxscaffold_2G00110610 Rroxscaffold_2G00110620 Rroxscaffold_2G00110710 Rroxscaffold_2G00110720 Rroxscaffold_2G00110730 Rroxscaffold_2G00111170 Rroxscaffold_2G00111510 Rroxscaffold_2G00114750 Rroxscaffold_2G00114760 Rroxscaffold_2G00114770 Rroxscaffold_2G00116270 Rroxscaffold_2G00121090 Rroxscaffold_2G00129350 Rroxscaffold_2G00130410 Rroxscaffold_2G00155930 Rroxscaffold_3G00218120 Rroxscaffold_3G00218330 Rroxscaffold_3G00218340 Rroxscaffold_3G00227530 Rroxscaffold_3G00233140 Rroxscaffold_3G00236800 Rroxscaffold_3G00242370 Rroxscaffold_3G00242380 Rroxscaffold_3G00242410 Rroxscaffold_3G00248720 Rroxscaffold_3G00248730 Rroxscaffold_3G00248770 Rroxscaffold_3G00258550 Rroxscaffold_3G00258560 Rroxscaffold_4G00287000 Rroxscaffold_4G00289070 Rroxscaffold_4G00289080 Rroxscaffold_4G00289100 Rroxscaffold_4G00295600 Rroxscaffold_4G00298090 Rroxscaffold_4G00308330 Rroxscaffold_4G00310570 Rroxscaffold_4G00310580 Rroxscaffold_4G00310620 Rroxscaffold_4G00315750 Rroxscaffold_4G00319620 Rroxscaffold_4G00319630 Rroxscaffold_4G00328870 Rroxscaffold_4G00328880 Rroxscaffold_4G00332120 Rroxscaffold_4G00332310 Rroxscaffold_5G00332660 Rroxscaffold_5G00332710 Rroxscaffold_5G00332970 Rroxscaffold_5G00344920 Rroxscaffold_5G00345540 Rroxscaffold_5G00346760 Rroxscaffold_5G00346770 Rroxscaffold_5G00347420 Rroxscaffold_5G00350360 Rroxscaffold_5G00350370 Rroxscaffold_5G00354490 Rroxscaffold_5G00370760 Rroxscaffold_5G00370770 Rroxscaffold_5G00374010 Rroxscaffold_5G00374020 Rroxscaffold_5G00374490 Rroxscaffold_5G00374510 Rroxscaffold_5G00387640 Rroxscaffold_5G00387650 Rroxscaffold_6G00387870 Rroxscaffold_6G00388560 Rroxscaffold_6G00388570 Rroxscaffold_6G00388670 Rroxscaffold_6G00388680 Rroxscaffold_6G00391960 Rroxscaffold_6G00393010 Rroxscaffold_6G00395010 Rroxscaffold_6G00395020 Rroxscaffold_6G00397990 Rroxscaffold_6G00401460 Rroxscaffold_6G00407850 Rroxscaffold_6G00423090 Rroxscaffold_6G00423100 Rroxscaffold_6G00423110 Rroxscaffold_7G00165960 Rroxscaffold_7G00165970 Rroxscaffold_7G00176270 Rroxscaffold_7G00176280 Rroxscaffold_7G00176600 Rroxscaffold_7G00176610 Rroxscaffold_7G00176620 Rroxscaffold_7G00176660 Rroxscaffold_7G00195710
rosa_rugosa Rorug03G0209000 Rorug05G0468000 Rorug05G0468000
rosa_samantha Rh3AG250900 Rh3AG257700 Rh3BG294700 Rh3CG284700 Rh3CG284800 Rh3DG280200 Rh3DG280300 Rh3DG280500 Rh3DG287600 Rh3DG287700 Rh4BG408500 Rh4DG402700 Rh6CG194400 Rh6CG194600 Rh6DG186400 Rh6DG186500 Rh7AG218100 Rh7AG278800 Rh7BG224200 Rh7CG231300 Rh7CG231400 Rh7DG225400
rosa_wichuraiana Rw3G022640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 522
Acc36I ACCTGC 1 cut(s) 1390
AccB1I GGYRCC 2 cut(s) 436, 505
AccBSI CCGCTC 2 cut(s) 806, 1315
AccII CGCG 2 cut(s) 688, 1106
AciI CCGC 6 cut(s) 804, 880, 1022, 1104, 1315, 1385
AclWI GGATC 3 cut(s) 624, 730, 1242
AcoI YGGCCR 1 cut(s) 1162
AcsI RAATTY 1 cut(s) 239
AcuI CTGAAG 2 cut(s) 632, 1133
AcyI GRCGYC 1 cut(s) 519
AfaI GTAC 1 cut(s) 769
AfiI CCNNNNNNNGG 7 cut(s) 124, 141, 343, 717, 718, 1210, 1333
AgeI ACCGGT 1 cut(s) 902
AgsI TTSAA 5 cut(s) 455, 461, 1051, 1084, 1301
AjnI CCWGG 5 cut(s) 111, 662, 715, 743, 1332
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AleI CACNNNNGTG 1 cut(s) 488
AluBI AGCT 8 cut(s) 581, 814, 1111, 1130, 1276, 1288, 1297, 1369
AluI AGCT 8 cut(s) 581, 814, 1111, 1130, 1276, 1288, 1297, 1369
Alw21I GWGCWC 2 cut(s) 1357, 1371
Alw26I GTCTC 2 cut(s) 134, 505
AlwI GGATC 3 cut(s) 624, 730, 1242
Ama87I CYCGRG 3 cut(s) 374, 444, 1372
AoxI GGCC 3 cut(s) 441, 660, 1162
ApeKI GCWGC 7 cut(s) 350, 395, 410, 554, 581, 1072, 1288
ApoI RAATTY 1 cut(s) 239
ArsI GACNNNNNNTTYG 2 cut(s) 238, 270
AsiGI ACCGGT 1 cut(s) 902
AspLEI GCGC 1 cut(s) 782
AspS9I GGNCC 7 cut(s) 115, 442, 660, 666, 680, 708, 883
AsuC2I CCSGG 2 cut(s) 445, 446
AsuHPI GGTGA 4 cut(s) 194, 343, 479, 917
AvaI CYCGRG 3 cut(s) 374, 444, 1372
AvaII GGWCC 5 cut(s) 115, 666, 680, 708, 883
BaeGI GKGCMC 1 cut(s) 439
BaeI ACNNNNGTAYC 2 cut(s) 823, 856
BalI TGGCCA 1 cut(s) 1164
BanI GGYRCC 2 cut(s) 436, 505
BanII GRGCYC 2 cut(s) 701, 1371
BauI CACGAG 1 cut(s) 1350
BbsI GAAGAC 1 cut(s) 723
Bbv12I GWGCWC 2 cut(s) 1357, 1371
BbvCI CCTCAGC 3 cut(s) 1122, 1256, 1319
BbvI GCAGC 7 cut(s) 337, 382, 397, 541, 568, 1084, 1275
BccI CCATC 4 cut(s) 134, 194, 668, 1154
BceAI ACGGC 1 cut(s) 160
BciT130I CCWGG 5 cut(s) 113, 664, 717, 745, 1334
BcnI CCSGG 2 cut(s) 445, 446
BcoDI GTCTC 2 cut(s) 134, 505
BfaI CTAG 3 cut(s) 206, 702, 777
BfuAI ACCTGC 1 cut(s) 1390
BglII AGATCT 2 cut(s) 387, 874
BisI GCNGC 9 cut(s) 351, 396, 411, 555, 582, 804, 1073, 1289, 1316
BlsI GCNGC 9 cut(s) 352, 397, 412, 556, 583, 805, 1074, 1290, 1317
Bme1390I CCNGG 7 cut(s) 113, 445, 446, 664, 717, 745, 1334
Bme18I GGWCC 5 cut(s) 115, 666, 680, 708, 883
BmeT110I CYCGRG 3 cut(s) 374, 444, 1372
BmgT120I GGNCC 7 cut(s) 115, 442, 660, 666, 680, 708, 883
BmiI GGNNCC 7 cut(s) 438, 507, 698, 709, 710, 884, 1325
BmrFI CCNGG 7 cut(s) 113, 445, 446, 664, 717, 745, 1334
BmsI GCATC 2 cut(s) 36, 1021
BoxI GACNNNNGTC 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 723
BpmI CTGGAG 3 cut(s) 727, 1277, 1328
Bpu10I CCTNAGC 4 cut(s) 1122, 1256, 1319, 1356
BpuMI CCSGG 2 cut(s) 445, 446
Bsa29I ATCGAT 1 cut(s) 897
BsaBI GATNNNNATC 1 cut(s) 1233
BsaHI GRCGYC 1 cut(s) 519
BsaI GGTCTC 2 cut(s) 134, 505
BsaJI CCNNGG 3 cut(s) 444, 605, 716
BsaWI WCCGGW 1 cut(s) 902
BsaXI ACNNNNNCTCC 2 cut(s) 929, 959
Bsc4I CCNNNNNNNGG 7 cut(s) 124, 141, 343, 717, 718, 1210, 1333
Bse118I RCCGGY 3 cut(s) 439, 902, 1151
Bse1I ACTGG 4 cut(s) 38, 669, 979, 1032
Bse8I GATNNNNATC 1 cut(s) 1233
BseBI CCWGG 5 cut(s) 113, 664, 717, 745, 1334
BseCI ATCGAT 1 cut(s) 897
BseDI CCNNGG 3 cut(s) 444, 605, 716
BseGI GGATG 2 cut(s) 749, 1036
BseJI GATNNNNATC 1 cut(s) 1233
BseLI CCNNNNNNNGG 7 cut(s) 124, 141, 343, 717, 718, 1210, 1333
BseNI ACTGG 4 cut(s) 38, 669, 979, 1032
BseRI GAGGAG 3 cut(s) 1226, 1325, 1336
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 7 cut(s) 337, 382, 397, 541, 568, 1084, 1275
BsgI GTGCAG 4 cut(s) 263, 336, 396, 1091
Bsh1236I CGCG 2 cut(s) 688, 1106
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 3 cut(s) 443, 662, 1164
BshNI GGYRCC 2 cut(s) 436, 505
BshTI ACCGGT 1 cut(s) 902
BshVI ATCGAT 1 cut(s) 897
BsiEI CGRYCG 1 cut(s) 249
BsiHKAI GWGCWC 2 cut(s) 1357, 1371
BsiHKCI CYCGRG 3 cut(s) 374, 444, 1372
BsiSI CCGG 5 cut(s) 50, 440, 445, 903, 1152
BslFI GGGAC 4 cut(s) 396, 694, 896, 1358
BslI CCNNNNNNNGG 7 cut(s) 124, 141, 343, 717, 718, 1210, 1333
BsmAI GTCTC 2 cut(s) 134, 505
BsmFI GGGAC 4 cut(s) 396, 694, 896, 1358
BsnI GGCC 3 cut(s) 443, 662, 1164
Bso31I GGTCTC 2 cut(s) 134, 505
BsoBI CYCGRG 3 cut(s) 374, 444, 1372
Bsp1286I GDGCHC 4 cut(s) 439, 701, 1357, 1371
Bsp143I GATC 9 cut(s) 184, 274, 387, 616, 722, 874, 996, 1234, 1338
BspACI CCGC 6 cut(s) 804, 880, 1022, 1104, 1315, 1385
BspANI GGCC 3 cut(s) 443, 662, 1164
BspDI ATCGAT 1 cut(s) 897
BspFNI CGCG 2 cut(s) 688, 1106
BspLI GGNNCC 7 cut(s) 438, 507, 698, 709, 710, 884, 1325
BspMI ACCTGC 1 cut(s) 1390
BspPI GGATC 3 cut(s) 624, 730, 1242
BspT107I GGYRCC 2 cut(s) 436, 505
BspTNI GGTCTC 2 cut(s) 134, 505
BsrBI CCGCTC 2 cut(s) 806, 1315
BsrFI RCCGGY 3 cut(s) 439, 902, 1151
BsrI ACTGG 4 cut(s) 38, 669, 979, 1032
BssAI RCCGGY 3 cut(s) 439, 902, 1151
BssECI CCNNGG 3 cut(s) 444, 605, 716
BssMI GATC 9 cut(s) 184, 274, 387, 616, 722, 874, 996, 1234, 1338
BssNI GRCGYC 1 cut(s) 519
BssSI CACGAG 1 cut(s) 1350
BssT1I CCWWGG 1 cut(s) 605
Bst2BI CACGAG 1 cut(s) 1350
Bst2UI CCWGG 5 cut(s) 113, 664, 717, 745, 1334
Bst4CI ACNGT 2 cut(s) 945, 1069
Bst6I CTCTTC 5 cut(s) 303, 423, 587, 1173, 1203
BstACI GRCGYC 1 cut(s) 519
BstC8I GCNNGC 5 cut(s) 355, 816, 1020, 1119, 1223
BstF5I GGATG 2 cut(s) 749, 1036
BstFNI CGCG 2 cut(s) 688, 1106
BstHHI GCGC 1 cut(s) 782
BstKTI GATC 9 cut(s) 187, 277, 390, 619, 725, 877, 999, 1237, 1341
BstMAI GTCTC 2 cut(s) 134, 505
BstMBI GATC 9 cut(s) 184, 274, 387, 616, 722, 874, 996, 1234, 1338
BstMCI CGRYCG 1 cut(s) 249
BstMWI GCNNNNNNNGC 4 cut(s) 581, 923, 1127, 1294
BstNI CCWGG 5 cut(s) 113, 664, 717, 745, 1334
BstPAI GACNNNNGTC 1 cut(s) 168
BstSCI CCNGG 7 cut(s) 111, 443, 444, 662, 715, 743, 1332
BstSLI GKGCMC 1 cut(s) 439
BstUI CGCG 2 cut(s) 688, 1106
BstV1I GCAGC 7 cut(s) 337, 382, 397, 541, 568, 1084, 1275
BstV2I GAAGAC 1 cut(s) 723
BstX2I RGATCY 4 cut(s) 387, 616, 874, 1234
BstYI RGATCY 4 cut(s) 387, 616, 874, 1234
Bsu15I ATCGAT 1 cut(s) 897
BsuRI GGCC 3 cut(s) 443, 662, 1164
BsuTUI ATCGAT 1 cut(s) 897
BtsCI GGATG 2 cut(s) 749, 1036
BtsIMutI CAGTG 4 cut(s) 676, 698, 1239, 1257
BveI ACCTGC 1 cut(s) 1390
Cac8I GCNNGC 5 cut(s) 355, 816, 1020, 1119, 1223
CfoI GCGC 1 cut(s) 782
Cfr10I RCCGGY 3 cut(s) 439, 902, 1151
Cfr13I GGNCC 7 cut(s) 115, 442, 660, 666, 680, 708, 883
Cfr9I CCCGGG 1 cut(s) 444
ClaI ATCGAT 1 cut(s) 897
CseI GACGC 1 cut(s) 677
Csp6I GTAC 1 cut(s) 768
CspAI ACCGGT 1 cut(s) 902
CviAII CATG 4 cut(s) 560, 758, 961, 1006
CviQI GTAC 1 cut(s) 768
DpnI GATC 9 cut(s) 186, 276, 389, 618, 724, 876, 998, 1236, 1340
DpnII GATC 9 cut(s) 184, 274, 387, 616, 722, 874, 996, 1234, 1338
EaeI YGGCCR 1 cut(s) 1162
Eam1104I CTCTTC 5 cut(s) 303, 423, 587, 1173, 1203
EarI CTCTTC 5 cut(s) 303, 423, 587, 1173, 1203
EciI GGCGGA 1 cut(s) 1037
Ecl136II GAGCTC 1 cut(s) 1369
Eco130I CCWWGG 1 cut(s) 605
Eco24I GRGCYC 2 cut(s) 701, 1371
Eco31I GGTCTC 2 cut(s) 134, 505
Eco47I GGWCC 5 cut(s) 115, 666, 680, 708, 883
Eco53kI GAGCTC 1 cut(s) 1369
Eco57I CTGAAG 2 cut(s) 632, 1133
Eco88I CYCGRG 3 cut(s) 374, 444, 1372
EcoICRI GAGCTC 1 cut(s) 1369
EcoO109I RGGNCCY 2 cut(s) 708, 883
EcoRII CCWGG 5 cut(s) 111, 662, 715, 743, 1332
EcoT14I CCWWGG 1 cut(s) 605
EcoT38I GRGCYC 2 cut(s) 701, 1371
ErhI CCWWGG 1 cut(s) 605
FaeI CATG 4 cut(s) 563, 761, 964, 1009
FaqI GGGAC 4 cut(s) 396, 694, 896, 1358
FatI CATG 4 cut(s) 559, 757, 960, 1005
FauI CCCGC 2 cut(s) 873, 1378
Fnu4HI GCNGC 9 cut(s) 351, 396, 411, 555, 582, 804, 1073, 1289, 1316
FokI GGATG 2 cut(s) 736, 1043
FriOI GRGCYC 2 cut(s) 701, 1371
Fsp4HI GCNGC 9 cut(s) 351, 396, 411, 555, 582, 804, 1073, 1289, 1316
FspBI CTAG 3 cut(s) 206, 702, 777
GlaI GCGC 1 cut(s) 781
GluI GCNGC 9 cut(s) 351, 396, 411, 555, 582, 804, 1073, 1289, 1316
GsuI CTGGAG 3 cut(s) 727, 1277, 1328
HaeIII GGCC 3 cut(s) 443, 662, 1164
HapII CCGG 5 cut(s) 50, 440, 445, 903, 1152
HgaI GACGC 1 cut(s) 677
HhaI GCGC 1 cut(s) 782
Hin1I GRCGYC 1 cut(s) 519
Hin1II CATG 4 cut(s) 563, 761, 964, 1009
Hin6I GCGC 1 cut(s) 780
HinP1I GCGC 1 cut(s) 780
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 812
HinfI GANTC 8 cut(s) 728, 797, 823, 984, 1001, 1061, 1329, 1346
HpaII CCGG 5 cut(s) 50, 440, 445, 903, 1152
HphI GGTGA 4 cut(s) 194, 343, 479, 917
Hpy166II GTNNAC 3 cut(s) 211, 334, 644
Hpy188I TCNGA 7 cut(s) 218, 246, 524, 727, 810, 828, 1380
Hpy188III TCNNGA 7 cut(s) 43, 197, 376, 565, 935, 1307, 1364
Hpy8I GTNNAC 3 cut(s) 211, 334, 644
Hpy99I CGWCG 2 cut(s) 167, 524
HpyAV CCTTC 7 cut(s) 73, 373, 455, 607, 693, 896, 1078
HpyCH4III ACNGT 2 cut(s) 945, 1069
HpyCH4IV ACGT 2 cut(s) 165, 519
HpyCH4V TGCA 7 cut(s) 280, 353, 413, 872, 960, 1018, 1072
HpyF10VI GCNNNNNNNGC 4 cut(s) 581, 923, 1127, 1294
HpySE526I ACGT 2 cut(s) 165, 519
Hsp92I GRCGYC 1 cut(s) 519
Hsp92II CATG 4 cut(s) 563, 761, 964, 1009
HspAI GCGC 1 cut(s) 780
KflI GGGWCCC 1 cut(s) 708
Kzo9I GATC 9 cut(s) 184, 274, 387, 616, 722, 874, 996, 1234, 1338
LmnI GCTCC 6 cut(s) 696, 1273, 1296, 1312, 1323, 1396
Lsp1109I GCAGC 7 cut(s) 337, 382, 397, 541, 568, 1084, 1275
LweI GCATC 2 cut(s) 36, 1021
MaeI CTAG 3 cut(s) 206, 702, 777
MaeII ACGT 2 cut(s) 165, 519
MaeIII GTNAC 2 cut(s) 467, 977
MalI GATC 9 cut(s) 186, 276, 389, 618, 724, 876, 998, 1236, 1340
MbiI CCGCTC 2 cut(s) 806, 1315
MboI GATC 9 cut(s) 184, 274, 387, 616, 722, 874, 996, 1234, 1338
MboII GAAGA 9 cut(s) 185, 320, 440, 604, 723, 860, 1156, 1190, 1220
MfeI CAATTG 1 cut(s) 863
MflI RGATCY 4 cut(s) 387, 616, 874, 1234
MhlI GDGCHC 4 cut(s) 439, 701, 1357, 1371
MlsI TGGCCA 1 cut(s) 1164
MluCI AATT 5 cut(s) 239, 324, 863, 919, 1012
MluNI TGGCCA 1 cut(s) 1164
MlyI GAGTC 6 cut(s) 737, 832, 978, 1010, 1338, 1340
MmeI TCCRAC 4 cut(s) 269, 474, 502, 1164
Mox20I TGGCCA 1 cut(s) 1164
MscI TGGCCA 1 cut(s) 1164
MslI CAYNNNNRTG 1 cut(s) 488
Msp20I TGGCCA 1 cut(s) 1164
MspA1I CMGCKG 2 cut(s) 581, 1288
MspI CCGG 5 cut(s) 50, 440, 445, 903, 1152
MspR9I CCNGG 7 cut(s) 113, 445, 446, 664, 717, 745, 1334
MunI CAATTG 1 cut(s) 863
MvaI CCWGG 5 cut(s) 113, 664, 717, 745, 1334
MvnI CGCG 2 cut(s) 688, 1106
MwoI GCNNNNNNNGC 4 cut(s) 581, 923, 1127, 1294
NciI CCSGG 2 cut(s) 445, 446
NdeII GATC 9 cut(s) 184, 274, 387, 616, 722, 874, 996, 1234, 1338
NlaIII CATG 4 cut(s) 563, 761, 964, 1009
NlaIV GGNNCC 7 cut(s) 438, 507, 698, 709, 710, 884, 1325
NmeAIII GCCGAG 5 cut(s) 383, 424, 482, 1060, 1352
NmuCI GTSAC 1 cut(s) 467
OliI CACNNNNGTG 1 cut(s) 488
PfeI GAWTC 2 cut(s) 797, 1061
PfoI TCCNGGA 1 cut(s) 1332
PinAI ACCGGT 1 cut(s) 902
PkrI GCNGC 9 cut(s) 352, 397, 412, 556, 583, 805, 1074, 1290, 1317
PleI GAGTC 6 cut(s) 736, 831, 978, 1009, 1337, 1340
PpsI GAGTC 6 cut(s) 736, 831, 978, 1009, 1337, 1340
PpuMI RGGWCCY 2 cut(s) 708, 883
PshAI GACNNNNGTC 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 1371
Psp5II RGGWCCY 2 cut(s) 708, 883
Psp6I CCWGG 5 cut(s) 111, 662, 715, 743, 1332
PspGI CCWGG 5 cut(s) 111, 662, 715, 743, 1332
PspN4I GGNNCC 7 cut(s) 438, 507, 698, 709, 710, 884, 1325
PspPI GGNCC 7 cut(s) 115, 442, 660, 666, 680, 708, 883
PspPPI RGGWCCY 2 cut(s) 708, 883
PsuI RGATCY 4 cut(s) 387, 616, 874, 1234
PvuII CAGCTG 2 cut(s) 581, 1288
RsaI GTAC 1 cut(s) 769
RsaNI GTAC 1 cut(s) 768
RseI CAYNNNNRTG 1 cut(s) 488
SacI GAGCTC 1 cut(s) 1371
SatI GCNGC 9 cut(s) 351, 396, 411, 555, 582, 804, 1073, 1289, 1316
Sau3AI GATC 9 cut(s) 184, 274, 387, 616, 722, 874, 996, 1234, 1338
Sau96I GGNCC 7 cut(s) 115, 442, 660, 666, 680, 708, 883
SchI GAGTC 6 cut(s) 737, 832, 978, 1010, 1338, 1340
ScrFI CCNGG 7 cut(s) 113, 445, 446, 664, 717, 745, 1334
SduI GDGCHC 4 cut(s) 439, 701, 1357, 1371
SfaNI GCATC 2 cut(s) 36, 1021
SinI GGWCC 5 cut(s) 115, 666, 680, 708, 883
SmaI CCCGGG 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 488
Sse9I AATT 5 cut(s) 239, 324, 863, 919, 1012
SsiI CCGC 6 cut(s) 804, 880, 1022, 1104, 1315, 1385
SspMI CTAG 3 cut(s) 206, 702, 777
SstI GAGCTC 1 cut(s) 1371
StyD4I CCNGG 7 cut(s) 111, 443, 444, 662, 715, 743, 1332
StyI CCWWGG 1 cut(s) 605
TaaI ACNGT 2 cut(s) 945, 1069
TaiI ACGT 2 cut(s) 168, 522
TaqI TCGA 6 cut(s) 234, 339, 564, 843, 897, 999
TaqII GACCGA 1 cut(s) 263
TasI AATT 5 cut(s) 239, 324, 863, 919, 1012
TauI GCSGC 2 cut(s) 806, 1318
TfiI GAWTC 2 cut(s) 797, 1061
TscAI CASTG 4 cut(s) 676, 698, 1246, 1257
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 7 cut(s) 350, 395, 410, 554, 581, 1072, 1288
Tsp45I GTSAC 1 cut(s) 467
TspDTI ATGAA 7 cut(s) 252, 317, 321, 977, 1022, 1074, 1212
TspGWI ACGGA 1 cut(s) 802
TspMI CCCGGG 1 cut(s) 444
TspRI CASTG 4 cut(s) 676, 698, 1246, 1257
VpaK11BI GGWCC 5 cut(s) 115, 666, 680, 708, 883
XapI RAATTY 1 cut(s) 239
XcmI CCANNNNNNNNNTGG 2 cut(s) 142, 490
XmaI CCCGGG 1 cut(s) 444
XspI CTAG 3 cut(s) 206, 702, 777
ZraI GACGTC 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.