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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 130 |
| AccII | CGCG | 3 cut(s) | 153, 192, 591 |
| AciI | CCGC | 4 cut(s) | 89, 130, 332, 466 |
| AclWI | GGATC | 2 cut(s) | 354, 542 |
| AcvI | CACGTG | 1 cut(s) | 628 |
| AdeI | CACNNNGTG | 1 cut(s) | 316 |
| AfaI | GTAC | 2 cut(s) | 34, 123 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 441, 550 |
| AgsI | TTSAA | 1 cut(s) | 374 |
| AjnI | CCWGG | 3 cut(s) | 171, 265, 450 |
| AluBI | AGCT | 4 cut(s) | 56, 79, 259, 581 |
| AluI | AGCT | 4 cut(s) | 56, 79, 259, 581 |
| Alw21I | GWGCWC | 1 cut(s) | 261 |
| Alw26I | GTCTC | 2 cut(s) | 109, 284 |
| AlwI | GGATC | 2 cut(s) | 354, 542 |
| Ama87I | CYCGRG | 1 cut(s) | 543 |
| AoxI | GGCC | 3 cut(s) | 477, 574, 621 |
| ApeKI | GCWGC | 3 cut(s) | 46, 281, 504 |
| AspLEI | GCGC | 1 cut(s) | 155 |
| AspS9I | GGNCC | 2 cut(s) | 574, 622 |
| AsuC2I | CCSGG | 2 cut(s) | 544, 545 |
| AsuHPI | GGTGA | 3 cut(s) | 328, 653, 665 |
| AvaI | CYCGRG | 1 cut(s) | 543 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 126, 159 |
| BanII | GRGCYC | 1 cut(s) | 261 |
| BbrPI | CACGTG | 1 cut(s) | 628 |
| Bbv12I | GWGCWC | 1 cut(s) | 261 |
| BbvI | GCAGC | 3 cut(s) | 33, 268, 516 |
| BccI | CCATC | 5 cut(s) | 89, 320, 337, 395, 419 |
| BceAI | ACGGC | 1 cut(s) | 419 |
| BciT130I | CCWGG | 3 cut(s) | 173, 267, 452 |
| BciVI | GTATCC | 1 cut(s) | 127 |
| BcnI | CCSGG | 2 cut(s) | 544, 545 |
| BcoDI | GTCTC | 2 cut(s) | 109, 284 |
| BfaI | CTAG | 1 cut(s) | 422 |
| BfmI | CTRYAG | 1 cut(s) | 47 |
| BfuI | GTATCC | 1 cut(s) | 127 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 485, 582 |
| BisI | GCNGC | 3 cut(s) | 47, 282, 505 |
| BlsI | GCNGC | 3 cut(s) | 48, 283, 506 |
| Bme1390I | CCNGG | 5 cut(s) | 173, 267, 452, 544, 545 |
| BmeT110I | CYCGRG | 1 cut(s) | 543 |
| BmgT120I | GGNCC | 2 cut(s) | 574, 622 |
| BmiI | GGNNCC | 2 cut(s) | 177, 406 |
| BmrFI | CCNGG | 5 cut(s) | 173, 267, 452, 544, 545 |
| BmsI | GCATC | 2 cut(s) | 157, 453 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 160, 192 |
| BpmI | CTGGAG | 2 cut(s) | 185, 638 |
| BpuEI | CTTGAG | 1 cut(s) | 245 |
| BpuMI | CCSGG | 2 cut(s) | 544, 545 |
| BsaAI | YACGTR | 1 cut(s) | 628 |
| BsaBI | GATNNNNATC | 1 cut(s) | 351 |
| BsaJI | CCNNGG | 3 cut(s) | 138, 435, 543 |
| BsaWI | WCCGGW | 1 cut(s) | 357 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 441, 550 |
| Bse1I | ACTGG | 2 cut(s) | 613, 621 |
| Bse8I | GATNNNNATC | 1 cut(s) | 351 |
| BseBI | CCWGG | 3 cut(s) | 173, 267, 452 |
| BseDI | CCNNGG | 3 cut(s) | 138, 435, 543 |
| BseGI | GGATG | 2 cut(s) | 100, 295 |
| BseJI | GATNNNNATC | 1 cut(s) | 351 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 441, 550 |
| BseMII | CTCAG | 2 cut(s) | 279, 411 |
| BseNI | ACTGG | 2 cut(s) | 613, 621 |
| BseRI | GAGGAG | 1 cut(s) | 20 |
| BseXI | GCAGC | 3 cut(s) | 33, 268, 516 |
| BseYI | CCCAGC | 1 cut(s) | 530 |
| Bsh1236I | CGCG | 3 cut(s) | 153, 192, 591 |
| BshFI | GGCC | 3 cut(s) | 479, 576, 623 |
| BsiHKAI | GWGCWC | 1 cut(s) | 261 |
| BsiHKCI | CYCGRG | 1 cut(s) | 543 |
| BsiSI | CCGG | 2 cut(s) | 358, 544 |
| BslFI | GGGAC | 1 cut(s) | 222 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 441, 550 |
| BsmAI | GTCTC | 2 cut(s) | 109, 284 |
| BsmFI | GGGAC | 1 cut(s) | 222 |
| BsnI | GGCC | 3 cut(s) | 479, 576, 623 |
| BsoBI | CYCGRG | 1 cut(s) | 543 |
| Bsp1286I | GDGCHC | 1 cut(s) | 261 |
| Bsp143I | GATC | 2 cut(s) | 346, 534 |
| Bsp68I | TCGCGA | 1 cut(s) | 591 |
| BspACI | CCGC | 4 cut(s) | 89, 130, 332, 466 |
| BspANI | GGCC | 3 cut(s) | 479, 576, 623 |
| BspCNI | CTCAG | 2 cut(s) | 280, 410 |
| BspFNI | CGCG | 3 cut(s) | 153, 192, 591 |
| BspLI | GGNNCC | 2 cut(s) | 177, 406 |
| BspMAI | CTGCAG | 1 cut(s) | 51 |
| BspPI | GGATC | 2 cut(s) | 354, 542 |
| BsrBI | CCGCTC | 1 cut(s) | 130 |
| BsrI | ACTGG | 2 cut(s) | 613, 621 |
| BssECI | CCNNGG | 3 cut(s) | 138, 435, 543 |
| BssMI | GATC | 2 cut(s) | 346, 534 |
| Bst2UI | CCWGG | 3 cut(s) | 173, 267, 452 |
| Bst4CI | ACNGT | 1 cut(s) | 225 |
| BstBAI | YACGTR | 1 cut(s) | 628 |
| BstC8I | GCNNGC | 3 cut(s) | 477, 552, 583 |
| BstDEI | CTNAG | 2 cut(s) | 288, 397 |
| BstDSI | CCRYGG | 1 cut(s) | 435 |
| BstF5I | GGATG | 2 cut(s) | 100, 295 |
| BstFNI | CGCG | 3 cut(s) | 153, 192, 591 |
| BstHHI | GCGC | 1 cut(s) | 155 |
| BstKTI | GATC | 2 cut(s) | 349, 537 |
| BstMAI | GTCTC | 2 cut(s) | 109, 284 |
| BstMBI | GATC | 2 cut(s) | 346, 534 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 472, 485, 582 |
| BstNI | CCWGG | 3 cut(s) | 173, 267, 452 |
| BstSCI | CCNGG | 5 cut(s) | 171, 265, 450, 542, 543 |
| BstSFI | CTRYAG | 1 cut(s) | 47 |
| BstUI | CGCG | 3 cut(s) | 153, 192, 591 |
| BstV1I | GCAGC | 3 cut(s) | 33, 268, 516 |
| BstX2I | RGATCY | 1 cut(s) | 346 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 193 |
| BstYI | RGATCY | 1 cut(s) | 346 |
| BsuI | GTATCC | 1 cut(s) | 127 |
| BsuRI | GGCC | 3 cut(s) | 479, 576, 623 |
| BtgI | CCRYGG | 1 cut(s) | 435 |
| BtgZI | GCGATG | 1 cut(s) | 134 |
| BtsCI | GGATG | 2 cut(s) | 100, 295 |
| BtsI | GCAGTG | 1 cut(s) | 561 |
| BtsIMutI | CAGTG | 2 cut(s) | 221, 561 |
| BtuMI | TCGCGA | 1 cut(s) | 591 |
| Cac8I | GCNNGC | 3 cut(s) | 477, 552, 583 |
| CfoI | GCGC | 1 cut(s) | 155 |
| Cfr13I | GGNCC | 2 cut(s) | 574, 622 |
| Cfr9I | CCCGGG | 1 cut(s) | 543 |
| Csp6I | GTAC | 2 cut(s) | 33, 122 |
| CviQI | GTAC | 2 cut(s) | 33, 122 |
| DdeI | CTNAG | 2 cut(s) | 288, 397 |
| DpnI | GATC | 2 cut(s) | 348, 536 |
| DpnII | GATC | 2 cut(s) | 346, 534 |
| DraIII | CACNNNGTG | 1 cut(s) | 316 |
| EciI | GGCGGA | 1 cut(s) | 104 |
| Ecl136II | GAGCTC | 1 cut(s) | 259 |
| Eco24I | GRGCYC | 1 cut(s) | 261 |
| Eco32I | GATATC | 1 cut(s) | 634 |
| Eco53kI | GAGCTC | 1 cut(s) | 259 |
| Eco72I | CACGTG | 1 cut(s) | 628 |
| Eco88I | CYCGRG | 1 cut(s) | 543 |
| EcoICRI | GAGCTC | 1 cut(s) | 259 |
| EcoRII | CCWGG | 3 cut(s) | 171, 265, 450 |
| EcoRV | GATATC | 1 cut(s) | 634 |
| EcoT38I | GRGCYC | 1 cut(s) | 261 |
| FaiI | YATR | 1 cut(s) | 473 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 492, 524 |
| FaqI | GGGAC | 1 cut(s) | 222 |
| FauI | CCCGC | 2 cut(s) | 123, 459 |
| Fnu4HI | GCNGC | 3 cut(s) | 47, 282, 505 |
| FokI | GGATG | 2 cut(s) | 107, 282 |
| FriOI | GRGCYC | 1 cut(s) | 261 |
| Fsp4HI | GCNGC | 3 cut(s) | 47, 282, 505 |
| FspBI | CTAG | 1 cut(s) | 422 |
| GlaI | GCGC | 1 cut(s) | 154 |
| GluI | GCNGC | 3 cut(s) | 47, 282, 505 |
| GsaI | CCCAGC | 1 cut(s) | 534 |
| GsuI | CTGGAG | 2 cut(s) | 185, 638 |
| HaeIII | GGCC | 3 cut(s) | 479, 576, 623 |
| HapII | CCGG | 2 cut(s) | 358, 544 |
| HhaI | GCGC | 1 cut(s) | 155 |
| Hin6I | GCGC | 1 cut(s) | 153 |
| HinP1I | GCGC | 1 cut(s) | 153 |
| HincII | GTYRAC | 2 cut(s) | 238, 363 |
| HindII | GTYRAC | 2 cut(s) | 238, 363 |
| HinfI | GANTC | 2 cut(s) | 292, 418 |
| HpaII | CCGG | 2 cut(s) | 358, 544 |
| HphI | GGTGA | 3 cut(s) | 328, 653, 665 |
| Hpy166II | GTNNAC | 2 cut(s) | 238, 363 |
| Hpy188I | TCNGA | 1 cut(s) | 400 |
| Hpy188III | TCNNGA | 7 cut(s) | 20, 164, 299, 374, 422, 538, 590 |
| Hpy8I | GTNNAC | 2 cut(s) | 238, 363 |
| HpyAV | CCTTC | 3 cut(s) | 23, 403, 478 |
| HpyCH4III | ACNGT | 1 cut(s) | 225 |
| HpyCH4IV | ACGT | 1 cut(s) | 627 |
| HpyCH4V | TGCA | 6 cut(s) | 49, 247, 412, 475, 512, 649 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 472, 485, 582 |
| HpyF3I | CTNAG | 2 cut(s) | 288, 397 |
| HpySE526I | ACGT | 1 cut(s) | 627 |
| HspAI | GCGC | 1 cut(s) | 153 |
| Kzo9I | GATC | 2 cut(s) | 346, 534 |
| LmnI | GCTCC | 6 cut(s) | 127, 145, 181, 256, 404, 547 |
| Lsp1109I | GCAGC | 3 cut(s) | 33, 268, 516 |
| LweI | GCATC | 2 cut(s) | 157, 453 |
| MaeI | CTAG | 1 cut(s) | 422 |
| MaeII | ACGT | 1 cut(s) | 627 |
| MaeIII | GTNAC | 3 cut(s) | 495, 538, 556 |
| MalI | GATC | 2 cut(s) | 348, 536 |
| MbiI | CCGCTC | 1 cut(s) | 130 |
| MboI | GATC | 2 cut(s) | 346, 534 |
| MboII | GAAGA | 2 cut(s) | 391, 469 |
| MflI | RGATCY | 1 cut(s) | 346 |
| MhlI | GDGCHC | 1 cut(s) | 261 |
| MlyI | GAGTC | 1 cut(s) | 286 |
| MmeI | TCCRAC | 3 cut(s) | 90, 183, 422 |
| MspI | CCGG | 2 cut(s) | 358, 544 |
| MspR9I | CCNGG | 5 cut(s) | 173, 267, 452, 544, 545 |
| MvaI | CCWGG | 3 cut(s) | 173, 267, 452 |
| MvnI | CGCG | 3 cut(s) | 153, 192, 591 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 472, 485, 582 |
| NciI | CCSGG | 2 cut(s) | 544, 545 |
| NdeII | GATC | 2 cut(s) | 346, 534 |
| NlaIV | GGNNCC | 2 cut(s) | 177, 406 |
| NmuCI | GTSAC | 3 cut(s) | 495, 538, 556 |
| NruI | TCGCGA | 1 cut(s) | 591 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 633 |
| PfeI | GAWTC | 1 cut(s) | 418 |
| PkrI | GCNGC | 3 cut(s) | 48, 283, 506 |
| PleI | GAGTC | 1 cut(s) | 286 |
| PmaCI | CACGTG | 1 cut(s) | 628 |
| PmlI | CACGTG | 1 cut(s) | 628 |
| PpsI | GAGTC | 1 cut(s) | 286 |
| Ppu21I | YACGTR | 1 cut(s) | 628 |
| Psp124BI | GAGCTC | 1 cut(s) | 261 |
| Psp6I | CCWGG | 3 cut(s) | 171, 265, 450 |
| PspCI | CACGTG | 1 cut(s) | 628 |
| PspFI | CCCAGC | 1 cut(s) | 530 |
| PspGI | CCWGG | 3 cut(s) | 171, 265, 450 |
| PspN4I | GGNNCC | 2 cut(s) | 177, 406 |
| PspPI | GGNCC | 2 cut(s) | 574, 622 |
| PstI | CTGCAG | 1 cut(s) | 51 |
| PsuI | RGATCY | 1 cut(s) | 346 |
| RruI | TCGCGA | 1 cut(s) | 591 |
| RsaI | GTAC | 2 cut(s) | 34, 123 |
| RsaNI | GTAC | 2 cut(s) | 33, 122 |
| SacI | GAGCTC | 1 cut(s) | 261 |
| SatI | GCNGC | 3 cut(s) | 47, 282, 505 |
| Sau3AI | GATC | 2 cut(s) | 346, 534 |
| Sau96I | GGNCC | 2 cut(s) | 574, 622 |
| SchI | GAGTC | 1 cut(s) | 286 |
| ScrFI | CCNGG | 5 cut(s) | 173, 267, 452, 544, 545 |
| SduI | GDGCHC | 1 cut(s) | 261 |
| SfaNI | GCATC | 2 cut(s) | 157, 453 |
| SfcI | CTRYAG | 1 cut(s) | 47 |
| SmaI | CCCGGG | 1 cut(s) | 545 |
| SmlI | CTYRAG | 1 cut(s) | 260 |
| SmoI | CTYRAG | 1 cut(s) | 260 |
| SsiI | CCGC | 4 cut(s) | 89, 130, 332, 466 |
| SspMI | CTAG | 1 cut(s) | 422 |
| SstI | GAGCTC | 1 cut(s) | 261 |
| StyD4I | CCNGG | 5 cut(s) | 171, 265, 450, 542, 543 |
| TaaI | ACNGT | 1 cut(s) | 225 |
| TaiI | ACGT | 1 cut(s) | 630 |
| TaqI | TCGA | 2 cut(s) | 416, 636 |
| TaqII | GACCGA | 1 cut(s) | 255 |
| TfiI | GAWTC | 1 cut(s) | 418 |
| TscAI | CASTG | 2 cut(s) | 228, 561 |
| TseFI | GTSAC | 3 cut(s) | 495, 538, 556 |
| TseI | GCWGC | 3 cut(s) | 46, 281, 504 |
| Tsp45I | GTSAC | 3 cut(s) | 495, 538, 556 |
| TspDTI | ATGAA | 1 cut(s) | 398 |
| TspMI | CCCGGG | 1 cut(s) | 543 |
| TspRI | CASTG | 2 cut(s) | 228, 561 |
| XbaI | TCTAGA | 1 cut(s) | 421 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 193 |
| XmaI | CCCGGG | 1 cut(s) | 543 |
| XspI | CTAG | 1 cut(s) | 422 |