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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 412 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 155 |
| Acc36I | ACCTGC | 1 cut(s) | 412 |
| AccBSI | CCGCTC | 1 cut(s) | 51 |
| AccII | CGCG | 2 cut(s) | 258, 393 |
| AciI | CCGC | 3 cut(s) | 13, 51, 393 |
| AclWI | GGATC | 1 cut(s) | 266 |
| AcoI | YGGCCR | 2 cut(s) | 136, 394 |
| AcyI | GRCGYC | 1 cut(s) | 69 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 53, 109, 127, 145, 281 |
| AgsI | TTSAA | 2 cut(s) | 346, 404 |
| AluBI | AGCT | 2 cut(s) | 373, 485 |
| AluI | AGCT | 2 cut(s) | 373, 485 |
| Alw21I | GWGCWC | 2 cut(s) | 367, 375 |
| Alw26I | GTCTC | 2 cut(s) | 9, 170 |
| AlwI | GGATC | 1 cut(s) | 266 |
| Ama87I | CYCGRG | 1 cut(s) | 144 |
| AoxI | GGCC | 4 cut(s) | 90, 136, 394, 498 |
| ApeKI | GCWGC | 1 cut(s) | 16 |
| AsuHPI | GGTGA | 3 cut(s) | 329, 350, 436 |
| AsuNHI | GCTAGC | 1 cut(s) | 469 |
| AvaI | CYCGRG | 1 cut(s) | 144 |
| AxyI | CCTNAGG | 1 cut(s) | 81 |
| BanII | GRGCYC | 1 cut(s) | 375 |
| BauI | CACGAG | 1 cut(s) | 94 |
| Bbv12I | GWGCWC | 2 cut(s) | 367, 375 |
| BbvI | GCAGC | 1 cut(s) | 28 |
| BccI | CCATC | 3 cut(s) | 194, 428, 445 |
| BceAI | ACGGC | 2 cut(s) | 485, 506 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 422, 456 |
| BcoDI | GTCTC | 2 cut(s) | 9, 170 |
| BfaI | CTAG | 2 cut(s) | 179, 470 |
| BfuAI | ACCTGC | 1 cut(s) | 412 |
| BisI | GCNGC | 3 cut(s) | 14, 17, 394 |
| BlsI | GCNGC | 3 cut(s) | 15, 18, 395 |
| BmeT110I | CYCGRG | 1 cut(s) | 144 |
| BmiI | GGNNCC | 1 cut(s) | 45 |
| BmsI | GCATC | 1 cut(s) | 284 |
| BmtI | GCTAGC | 1 cut(s) | 473 |
| BoxI | GACNNNNGTC | 1 cut(s) | 252 |
| BpuEI | CTTGAG | 1 cut(s) | 389 |
| BsaAI | YACGTR | 1 cut(s) | 231 |
| BsaHI | GRCGYC | 1 cut(s) | 69 |
| BsaI | GGTCTC | 1 cut(s) | 170 |
| BsaJI | CCNNGG | 3 cut(s) | 20, 250, 280 |
| BsaWI | WCCGGW | 1 cut(s) | 102 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 80, 110, 357, 387 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 53, 109, 127, 145, 281 |
| Bse21I | CCTNAGG | 1 cut(s) | 81 |
| BseDI | CCNNGG | 3 cut(s) | 20, 250, 280 |
| BseGI | GGATG | 4 cut(s) | 62, 274, 299, 456 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 53, 109, 127, 145, 281 |
| BseRI | GAGGAG | 1 cut(s) | 425 |
| BseXI | GCAGC | 1 cut(s) | 28 |
| Bsh1236I | CGCG | 2 cut(s) | 258, 393 |
| Bsh1285I | CGRYCG | 1 cut(s) | 467 |
| BshFI | GGCC | 4 cut(s) | 92, 138, 396, 500 |
| BsiEI | CGRYCG | 1 cut(s) | 467 |
| BsiHKAI | GWGCWC | 2 cut(s) | 367, 375 |
| BsiHKCI | CYCGRG | 1 cut(s) | 144 |
| BsiSI | CCGG | 1 cut(s) | 103 |
| BslFI | GGGAC | 1 cut(s) | 161 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 53, 109, 127, 145, 281 |
| BsmAI | GTCTC | 2 cut(s) | 9, 170 |
| BsmFI | GGGAC | 1 cut(s) | 161 |
| BsmI | GAATGC | 1 cut(s) | 352 |
| BsnI | GGCC | 4 cut(s) | 92, 138, 396, 500 |
| Bso31I | GGTCTC | 1 cut(s) | 170 |
| BsoBI | CYCGRG | 1 cut(s) | 144 |
| Bsp1286I | GDGCHC | 2 cut(s) | 367, 375 |
| Bsp143I | GATC | 2 cut(s) | 207, 271 |
| Bsp19I | CCATGG | 1 cut(s) | 250 |
| BspACI | CCGC | 3 cut(s) | 13, 51, 393 |
| BspANI | GGCC | 4 cut(s) | 92, 138, 396, 500 |
| BspFNI | CGCG | 2 cut(s) | 258, 393 |
| BspLI | GGNNCC | 1 cut(s) | 45 |
| BspMI | ACCTGC | 1 cut(s) | 412 |
| BspOI | GCTAGC | 1 cut(s) | 473 |
| BspPI | GGATC | 1 cut(s) | 266 |
| BspTNI | GGTCTC | 1 cut(s) | 170 |
| BsrBI | CCGCTC | 1 cut(s) | 51 |
| BssECI | CCNNGG | 3 cut(s) | 20, 250, 280 |
| BssMI | GATC | 2 cut(s) | 207, 271 |
| BssNI | GRCGYC | 1 cut(s) | 69 |
| BssSI | CACGAG | 1 cut(s) | 94 |
| BssT1I | CCWWGG | 2 cut(s) | 250, 280 |
| Bst2BI | CACGAG | 1 cut(s) | 94 |
| Bst4CI | ACNGT | 2 cut(s) | 239, 465 |
| BstACI | GRCGYC | 1 cut(s) | 69 |
| BstBAI | YACGTR | 1 cut(s) | 231 |
| BstC8I | GCNNGC | 2 cut(s) | 363, 471 |
| BstDEI | CTNAG | 1 cut(s) | 81 |
| BstDSI | CCRYGG | 1 cut(s) | 250 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 279 |
| BstF5I | GGATG | 4 cut(s) | 62, 274, 299, 456 |
| BstFNI | CGCG | 2 cut(s) | 258, 393 |
| BstKTI | GATC | 2 cut(s) | 210, 274 |
| BstMAI | GTCTC | 2 cut(s) | 9, 170 |
| BstMBI | GATC | 2 cut(s) | 207, 271 |
| BstMCI | CGRYCG | 1 cut(s) | 467 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 252 |
| BstUI | CGCG | 2 cut(s) | 258, 393 |
| BstV1I | GCAGC | 1 cut(s) | 28 |
| Bsu36I | CCTNAGG | 1 cut(s) | 81 |
| BsuRI | GGCC | 4 cut(s) | 92, 138, 396, 500 |
| BtgI | CCRYGG | 1 cut(s) | 250 |
| BtgZI | GCGATG | 1 cut(s) | 213 |
| BtsCI | GGATG | 4 cut(s) | 62, 274, 299, 456 |
| BveI | ACCTGC | 1 cut(s) | 412 |
| Cac8I | GCNNGC | 2 cut(s) | 363, 471 |
| CseI | GACGC | 1 cut(s) | 58 |
| CviAII | CATG | 2 cut(s) | 251, 407 |
| DdeI | CTNAG | 1 cut(s) | 81 |
| DpnI | GATC | 2 cut(s) | 209, 273 |
| DpnII | GATC | 2 cut(s) | 207, 271 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 155 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 155 |
| EaeI | YGGCCR | 2 cut(s) | 136, 394 |
| Ecl136II | GAGCTC | 1 cut(s) | 373 |
| Eco130I | CCWWGG | 2 cut(s) | 250, 280 |
| Eco147I | AGGCCT | 1 cut(s) | 92 |
| Eco24I | GRGCYC | 1 cut(s) | 375 |
| Eco31I | GGTCTC | 1 cut(s) | 170 |
| Eco53kI | GAGCTC | 1 cut(s) | 373 |
| Eco81I | CCTNAGG | 1 cut(s) | 81 |
| Eco88I | CYCGRG | 1 cut(s) | 144 |
| EcoICRI | GAGCTC | 1 cut(s) | 373 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 279 |
| EcoT14I | CCWWGG | 2 cut(s) | 250, 280 |
| EcoT38I | GRGCYC | 1 cut(s) | 375 |
| ErhI | CCWWGG | 2 cut(s) | 250, 280 |
| FaeI | CATG | 2 cut(s) | 254, 410 |
| FaiI | YATR | 4 cut(s) | 216, 218, 252, 408 |
| FaqI | GGGAC | 1 cut(s) | 161 |
| FatI | CATG | 2 cut(s) | 250, 406 |
| FauNDI | CATATG | 1 cut(s) | 216 |
| Fnu4HI | GCNGC | 3 cut(s) | 14, 17, 394 |
| FokI | GGATG | 4 cut(s) | 69, 281, 306, 463 |
| FriOI | GRGCYC | 1 cut(s) | 375 |
| Fsp4HI | GCNGC | 3 cut(s) | 14, 17, 394 |
| FspBI | CTAG | 2 cut(s) | 179, 470 |
| GluI | GCNGC | 3 cut(s) | 14, 17, 394 |
| HaeIII | GGCC | 4 cut(s) | 92, 138, 396, 500 |
| HapII | CCGG | 1 cut(s) | 103 |
| HgaI | GACGC | 1 cut(s) | 58 |
| Hin1I | GRCGYC | 1 cut(s) | 69 |
| Hin1II | CATG | 2 cut(s) | 254, 410 |
| HinfI | GANTC | 1 cut(s) | 175 |
| HpaII | CCGG | 1 cut(s) | 103 |
| HphI | GGTGA | 3 cut(s) | 329, 350, 436 |
| Hpy188I | TCNGA | 2 cut(s) | 48, 161 |
| Hpy188III | TCNNGA | 3 cut(s) | 146, 245, 291 |
| HpyAV | CCTTC | 1 cut(s) | 441 |
| HpyCH4III | ACNGT | 2 cut(s) | 239, 465 |
| HpyCH4IV | ACGT | 1 cut(s) | 230 |
| HpyCH4V | TGCA | 4 cut(s) | 99, 214, 234, 297 |
| HpyF3I | CTNAG | 1 cut(s) | 81 |
| HpySE526I | ACGT | 1 cut(s) | 230 |
| Hsp92I | GRCGYC | 1 cut(s) | 69 |
| Hsp92II | CATG | 2 cut(s) | 254, 410 |
| Kzo9I | GATC | 2 cut(s) | 207, 271 |
| LmnI | GCTCC | 2 cut(s) | 49, 378 |
| LpnPI | CCDG | 3 cut(s) | 116, 285, 407 |
| Lsp1109I | GCAGC | 1 cut(s) | 28 |
| LweI | GCATC | 1 cut(s) | 284 |
| MaeI | CTAG | 2 cut(s) | 179, 470 |
| MaeII | ACGT | 1 cut(s) | 230 |
| MaeIII | GTNAC | 1 cut(s) | 245 |
| MalI | GATC | 2 cut(s) | 209, 273 |
| MbiI | CCGCTC | 1 cut(s) | 51 |
| MboI | GATC | 2 cut(s) | 207, 271 |
| MhlI | GDGCHC | 2 cut(s) | 367, 375 |
| MlyI | GAGTC | 1 cut(s) | 169 |
| MmeI | TCCRAC | 3 cut(s) | 139, 366, 438 |
| MseI | TTAA | 2 cut(s) | 261, 511 |
| MspI | CCGG | 1 cut(s) | 103 |
| Mva1269I | GAATGC | 1 cut(s) | 352 |
| MvnI | CGCG | 2 cut(s) | 258, 393 |
| NcoI | CCATGG | 1 cut(s) | 250 |
| NdeI | CATATG | 1 cut(s) | 216 |
| NdeII | GATC | 2 cut(s) | 207, 271 |
| NheI | GCTAGC | 1 cut(s) | 469 |
| NlaIII | CATG | 2 cut(s) | 254, 410 |
| NlaIV | GGNNCC | 1 cut(s) | 45 |
| NmeAIII | GCCGAG | 3 cut(s) | 45, 208, 376 |
| NmuCI | GTSAC | 1 cut(s) | 245 |
| PaqCI | CACCTGC | 1 cut(s) | 412 |
| PceI | AGGCCT | 1 cut(s) | 92 |
| PctI | GAATGC | 1 cut(s) | 352 |
| PkrI | GCNGC | 3 cut(s) | 15, 18, 395 |
| PleI | GAGTC | 1 cut(s) | 169 |
| PpsI | GAGTC | 1 cut(s) | 169 |
| Ppu21I | YACGTR | 1 cut(s) | 231 |
| PshAI | GACNNNNGTC | 1 cut(s) | 252 |
| Psp124BI | GAGCTC | 1 cut(s) | 375 |
| PspN4I | GGNNCC | 1 cut(s) | 45 |
| SacI | GAGCTC | 1 cut(s) | 375 |
| SaqAI | TTAA | 2 cut(s) | 261, 511 |
| SatI | GCNGC | 3 cut(s) | 14, 17, 394 |
| Sau3AI | GATC | 2 cut(s) | 207, 271 |
| SchI | GAGTC | 1 cut(s) | 169 |
| SduI | GDGCHC | 2 cut(s) | 367, 375 |
| SetI | ASST | 8 cut(s) | 26, 87, 156, 166, 233, 375, 426, 487 |
| SfaNI | GCATC | 1 cut(s) | 284 |
| SmlI | CTYRAG | 1 cut(s) | 368 |
| SmoI | CTYRAG | 1 cut(s) | 368 |
| SseBI | AGGCCT | 1 cut(s) | 92 |
| SsiI | CCGC | 3 cut(s) | 13, 51, 393 |
| SspMI | CTAG | 2 cut(s) | 179, 470 |
| SstI | GAGCTC | 1 cut(s) | 375 |
| StuI | AGGCCT | 1 cut(s) | 92 |
| StyI | CCWWGG | 2 cut(s) | 250, 280 |
| TaaI | ACNGT | 2 cut(s) | 239, 465 |
| TaiI | ACGT | 1 cut(s) | 233 |
| TauI | GCSGC | 2 cut(s) | 16, 396 |
| Tru1I | TTAA | 2 cut(s) | 261, 511 |
| Tru9I | TTAA | 2 cut(s) | 261, 511 |
| TseFI | GTSAC | 1 cut(s) | 245 |
| TseI | GCWGC | 1 cut(s) | 16 |
| Tsp45I | GTSAC | 1 cut(s) | 245 |
| TspDTI | ATGAA | 1 cut(s) | 322 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 279 |
| XspI | CTAG | 2 cut(s) | 179, 470 |