TdcA1-ORF2 protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 189, 880 |
| AccII | CGCG | 1 cut(s) | 332 |
| AciI | CCGC | 6 cut(s) | 133, 266, 330, 419, 657, 844 |
| AclI | AACGTT | 1 cut(s) | 15 |
| AcsI | RAATTY | 3 cut(s) | 204, 489, 817 |
| AcuI | CTGAAG | 2 cut(s) | 357, 372 |
| AfaI | GTAC | 3 cut(s) | 106, 227, 441 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 189, 543, 544, 634, 880 |
| AgsI | TTSAA | 6 cut(s) | 409, 451, 479, 572, 611, 677 |
| AluBI | AGCT | 1 cut(s) | 526 |
| AluI | AGCT | 1 cut(s) | 526 |
| Alw21I | GWGCWC | 1 cut(s) | 369 |
| Alw26I | GTCTC | 4 cut(s) | 152, 294, 469, 789 |
| Alw44I | GTGCAC | 1 cut(s) | 365 |
| Ama87I | CYCGRG | 1 cut(s) | 620 |
| ApaLI | GTGCAC | 1 cut(s) | 365 |
| ApeKI | GCWGC | 1 cut(s) | 66 |
| ApoI | RAATTY | 3 cut(s) | 204, 489, 817 |
| AspLEI | GCGC | 1 cut(s) | 334 |
| AsuHPI | GGTGA | 5 cut(s) | 92, 370, 626, 680, 775 |
| AvaI | CYCGRG | 1 cut(s) | 620 |
| BaeGI | GKGCMC | 1 cut(s) | 369 |
| BauI | CACGAG | 1 cut(s) | 368 |
| Bbv12I | GWGCWC | 1 cut(s) | 369 |
| BbvI | GCAGC | 1 cut(s) | 78 |
| BccI | CCATC | 3 cut(s) | 183, 597, 677 |
| BciVI | GTATCC | 1 cut(s) | 20 |
| BclI | TGATCA | 1 cut(s) | 121 |
| BcoDI | GTCTC | 4 cut(s) | 152, 294, 469, 789 |
| BfaI | CTAG | 3 cut(s) | 527, 719, 822 |
| BfuI | GTATCC | 1 cut(s) | 20 |
| BisI | GCNGC | 4 cut(s) | 67, 134, 267, 658 |
| BlsI | GCNGC | 4 cut(s) | 68, 135, 268, 659 |
| BmeT110I | CYCGRG | 1 cut(s) | 620 |
| BmsI | GCATC | 1 cut(s) | 130 |
| BpmI | CTGGAG | 1 cut(s) | 451 |
| Bpu10I | CCTNAGC | 1 cut(s) | 50 |
| BsaI | GGTCTC | 1 cut(s) | 152 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 55, 85 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 189, 543, 544, 634, 880 |
| Bse118I | RCCGGY | 1 cut(s) | 430 |
| Bse1I | ACTGG | 3 cut(s) | 468, 545, 581 |
| Bse3DI | GCAATG | 2 cut(s) | 73, 531 |
| BseGI | GGATG | 4 cut(s) | 250, 347, 585, 669 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 189, 543, 544, 634, 880 |
| BseMI | GCAATG | 2 cut(s) | 73, 531 |
| BseMII | CTCAG | 1 cut(s) | 256 |
| BseNI | ACTGG | 3 cut(s) | 468, 545, 581 |
| BseSI | GKGCMC | 1 cut(s) | 369 |
| BseXI | GCAGC | 1 cut(s) | 78 |
| BseYI | CCCAGC | 1 cut(s) | 839 |
| Bsh1236I | CGCG | 1 cut(s) | 332 |
| BsiHKAI | GWGCWC | 1 cut(s) | 369 |
| BsiHKCI | CYCGRG | 1 cut(s) | 620 |
| BsiSI | CCGG | 1 cut(s) | 431 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 189, 543, 544, 634, 880 |
| BsmAI | GTCTC | 4 cut(s) | 152, 294, 469, 789 |
| Bso31I | GGTCTC | 1 cut(s) | 152 |
| BsoBI | CYCGRG | 1 cut(s) | 620 |
| Bsp1286I | GDGCHC | 1 cut(s) | 369 |
| Bsp143I | GATC | 2 cut(s) | 121, 616 |
| BspACI | CCGC | 6 cut(s) | 133, 266, 330, 419, 657, 844 |
| BspCNI | CTCAG | 1 cut(s) | 255 |
| BspFNI | CGCG | 1 cut(s) | 332 |
| BspTNI | GGTCTC | 1 cut(s) | 152 |
| BsrDI | GCAATG | 2 cut(s) | 73, 531 |
| BsrFI | RCCGGY | 1 cut(s) | 430 |
| BsrI | ACTGG | 3 cut(s) | 468, 545, 581 |
| BssAI | RCCGGY | 1 cut(s) | 430 |
| BssMI | GATC | 2 cut(s) | 121, 616 |
| BssSI | CACGAG | 1 cut(s) | 368 |
| Bst2BI | CACGAG | 1 cut(s) | 368 |
| Bst4CI | ACNGT | 4 cut(s) | 104, 173, 560, 866 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 75, 427 |
| BstC8I | GCNNGC | 1 cut(s) | 773 |
| BstDEI | CTNAG | 3 cut(s) | 50, 242, 710 |
| BstEII | GGTNACC | 2 cut(s) | 98, 686 |
| BstF5I | GGATG | 4 cut(s) | 250, 347, 585, 669 |
| BstFNI | CGCG | 1 cut(s) | 332 |
| BstHHI | GCGC | 1 cut(s) | 334 |
| BstKTI | GATC | 2 cut(s) | 124, 619 |
| BstMAI | GTCTC | 4 cut(s) | 152, 294, 469, 789 |
| BstMBI | GATC | 2 cut(s) | 121, 616 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 75, 427 |
| BstNSI | RCATGY | 1 cut(s) | 839 |
| BstPI | GGTNACC | 2 cut(s) | 98, 686 |
| BstSLI | GKGCMC | 1 cut(s) | 369 |
| BstUI | CGCG | 1 cut(s) | 332 |
| BstV1I | GCAGC | 1 cut(s) | 78 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 262 |
| BsuI | GTATCC | 1 cut(s) | 20 |
| BtgZI | GCGATG | 2 cut(s) | 69, 737 |
| BtsCI | GGATG | 4 cut(s) | 250, 347, 585, 669 |
| BtsI | GCAGTG | 1 cut(s) | 219 |
| BtsIMutI | CAGTG | 4 cut(s) | 219, 475, 538, 885 |
| Cac8I | GCNNGC | 1 cut(s) | 773 |
| CfoI | GCGC | 1 cut(s) | 334 |
| Cfr10I | RCCGGY | 1 cut(s) | 430 |
| CseI | GACGC | 1 cut(s) | 364 |
| Csp6I | GTAC | 3 cut(s) | 105, 226, 440 |
| CviAII | CATG | 5 cut(s) | 385, 427, 521, 829, 836 |
| CviJI | RGCY | 5 cut(s) | 136, 320, 526, 660, 730 |
| CviKI_1 | RGCY | 5 cut(s) | 136, 320, 526, 660, 730 |
| CviQI | GTAC | 3 cut(s) | 105, 226, 440 |
| DdeI | CTNAG | 3 cut(s) | 50, 242, 710 |
| DpnI | GATC | 2 cut(s) | 123, 618 |
| DpnII | GATC | 2 cut(s) | 121, 616 |
| EciI | GGCGGA | 1 cut(s) | 859 |
| Eco31I | GGTCTC | 1 cut(s) | 152 |
| Eco57I | CTGAAG | 2 cut(s) | 357, 372 |
| Eco88I | CYCGRG | 1 cut(s) | 620 |
| Eco91I | GGTNACC | 2 cut(s) | 98, 686 |
| EcoO65I | GGTNACC | 2 cut(s) | 98, 686 |
| EcoRI | GAATTC | 1 cut(s) | 817 |
| FaeI | CATG | 5 cut(s) | 388, 430, 524, 832, 839 |
| FatI | CATG | 5 cut(s) | 384, 426, 520, 828, 835 |
| FauNDI | CATATG | 1 cut(s) | 118 |
| FbaI | TGATCA | 1 cut(s) | 121 |
| Fnu4HI | GCNGC | 4 cut(s) | 67, 134, 267, 658 |
| FokI | GGATG | 4 cut(s) | 237, 354, 572, 676 |
| Fsp4HI | GCNGC | 4 cut(s) | 67, 134, 267, 658 |
| FspBI | CTAG | 3 cut(s) | 527, 719, 822 |
| GlaI | GCGC | 1 cut(s) | 333 |
| GluI | GCNGC | 4 cut(s) | 67, 134, 267, 658 |
| GsaI | CCCAGC | 1 cut(s) | 843 |
| GsuI | CTGGAG | 1 cut(s) | 451 |
| HapII | CCGG | 1 cut(s) | 431 |
| HgaI | GACGC | 1 cut(s) | 364 |
| HhaI | GCGC | 1 cut(s) | 334 |
| Hin1II | CATG | 5 cut(s) | 388, 430, 524, 832, 839 |
| Hin6I | GCGC | 1 cut(s) | 332 |
| HinP1I | GCGC | 1 cut(s) | 332 |
| HincII | GTYRAC | 1 cut(s) | 856 |
| HindII | GTYRAC | 1 cut(s) | 856 |
| HinfI | GANTC | 1 cut(s) | 500 |
| HpaII | CCGG | 1 cut(s) | 431 |
| HphI | GGTGA | 5 cut(s) | 92, 370, 626, 680, 775 |
| Hpy166II | GTNNAC | 2 cut(s) | 367, 856 |
| Hpy188I | TCNGA | 1 cut(s) | 753 |
| Hpy188III | TCNNGA | 7 cut(s) | 41, 125, 563, 602, 620, 622, 741 |
| Hpy8I | GTNNAC | 2 cut(s) | 367, 856 |
| HpyAV | CCTTC | 3 cut(s) | 332, 403, 798 |
| HpyCH4III | ACNGT | 4 cut(s) | 104, 173, 560, 866 |
| HpyCH4IV | ACGT | 1 cut(s) | 15 |
| HpyCH4V | TGCA | 7 cut(s) | 78, 90, 143, 367, 514, 759, 775 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 75, 427 |
| HpyF3I | CTNAG | 3 cut(s) | 50, 242, 710 |
| HpySE526I | ACGT | 1 cut(s) | 15 |
| Hsp92II | CATG | 5 cut(s) | 388, 430, 524, 832, 839 |
| HspAI | GCGC | 1 cut(s) | 332 |
| Ksp22I | TGATCA | 1 cut(s) | 121 |
| Kzo9I | GATC | 2 cut(s) | 121, 616 |
| LmnI | GCTCC | 2 cut(s) | 63, 401 |
| Lsp1109I | GCAGC | 1 cut(s) | 78 |
| LweI | GCATC | 1 cut(s) | 130 |
| MaeI | CTAG | 3 cut(s) | 527, 719, 822 |
| MaeII | ACGT | 1 cut(s) | 15 |
| MaeIII | GTNAC | 3 cut(s) | 98, 376, 686 |
| MalI | GATC | 2 cut(s) | 123, 618 |
| MboI | GATC | 2 cut(s) | 121, 616 |
| MboII | GAAGA | 2 cut(s) | 198, 212 |
| MhlI | GDGCHC | 1 cut(s) | 369 |
| MluCI | AATT | 7 cut(s) | 92, 204, 489, 677, 694, 776, 817 |
| MlyI | GAGTC | 1 cut(s) | 494 |
| MnlI | CCTC | 2 cut(s) | 52, 189 |
| MseI | TTAA | 2 cut(s) | 219, 555 |
| MslI | CAYNNNNRTG | 1 cut(s) | 383 |
| MspI | CCGG | 1 cut(s) | 431 |
| MvnI | CGCG | 1 cut(s) | 332 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 75, 427 |
| NdeI | CATATG | 1 cut(s) | 118 |
| NdeII | GATC | 2 cut(s) | 121, 616 |
| NlaIII | CATG | 5 cut(s) | 388, 430, 524, 832, 839 |
| NmuCI | GTSAC | 3 cut(s) | 98, 376, 686 |
| NspI | RCATGY | 1 cut(s) | 839 |
| PaeR7I | CTCGAG | 1 cut(s) | 620 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 189, 880 |
| PkrI | GCNGC | 4 cut(s) | 68, 135, 268, 659 |
| PleI | GAGTC | 1 cut(s) | 494 |
| PpsI | GAGTC | 1 cut(s) | 494 |
| Psp1406I | AACGTT | 1 cut(s) | 15 |
| PspEI | GGTNACC | 2 cut(s) | 98, 686 |
| PspFI | CCCAGC | 1 cut(s) | 839 |
| RsaI | GTAC | 3 cut(s) | 106, 227, 441 |
| RsaNI | GTAC | 3 cut(s) | 105, 226, 440 |
| RseI | CAYNNNNRTG | 1 cut(s) | 383 |
| SaqAI | TTAA | 2 cut(s) | 219, 555 |
| SatI | GCNGC | 4 cut(s) | 67, 134, 267, 658 |
| Sau3AI | GATC | 2 cut(s) | 121, 616 |
| SchI | GAGTC | 1 cut(s) | 494 |
| SduI | GDGCHC | 1 cut(s) | 369 |
| SetI | ASST | 6 cut(s) | 18, 277, 383, 528, 616, 765 |
| SfaNI | GCATC | 1 cut(s) | 130 |
| Sfr274I | CTCGAG | 1 cut(s) | 620 |
| SlaI | CTCGAG | 1 cut(s) | 620 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 383 |
| SmlI | CTYRAG | 1 cut(s) | 620 |
| SmoI | CTYRAG | 1 cut(s) | 620 |
| Sse9I | AATT | 7 cut(s) | 92, 204, 489, 677, 694, 776, 817 |
| SsiI | CCGC | 6 cut(s) | 133, 266, 330, 419, 657, 844 |
| SspI | AATATT | 1 cut(s) | 259 |
| SspMI | CTAG | 3 cut(s) | 527, 719, 822 |
| TaaI | ACNGT | 4 cut(s) | 104, 173, 560, 866 |
| TaiI | ACGT | 1 cut(s) | 18 |
| TaqI | TCGA | 2 cut(s) | 138, 621 |
| TasI | AATT | 7 cut(s) | 92, 204, 489, 677, 694, 776, 817 |
| TauI | GCSGC | 3 cut(s) | 136, 269, 660 |
| Tru1I | TTAA | 2 cut(s) | 219, 555 |
| Tru9I | TTAA | 2 cut(s) | 219, 555 |
| TscAI | CASTG | 4 cut(s) | 219, 475, 545, 885 |
| TseFI | GTSAC | 3 cut(s) | 98, 376, 686 |
| TseI | GCWGC | 1 cut(s) | 66 |
| Tsp45I | GTSAC | 3 cut(s) | 98, 376, 686 |
| TspDTI | ATGAA | 4 cut(s) | 105, 401, 680, 740 |
| TspRI | CASTG | 4 cut(s) | 219, 475, 545, 885 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 189, 880 |
| VneI | GTGCAC | 1 cut(s) | 365 |
| XapI | RAATTY | 3 cut(s) | 204, 489, 817 |
| XceI | RCATGY | 1 cut(s) | 839 |
| XhoI | CTCGAG | 1 cut(s) | 620 |
| XspI | CTAG | 3 cut(s) | 527, 719, 822 |