Transposase family tnp2
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transpos_assoc | PF13963 | 3 - 75 | 6e-20 | Transposase-associated domain |
| Transposase_21 | PF02992 | 274 - 481 | 2.3e-90 | Transposase family tnp2 |
| DUF4218 | PF13960 | 685 - 786 | 2.3e-42 | Domain of unknown function (DUF4218) |
| DUF4216 | PF13952 | 954 - 1018 | 4.8e-15 | Domain of unknown function (DUF4216) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 179, 3138 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1713, 2639 |
| Acc36I | ACCTGC | 4 cut(s) | 160, 664, 1242, 2958 |
| Acc65I | GGTACC | 1 cut(s) | 1861 |
| AccB1I | GGYRCC | 2 cut(s) | 1861, 2798 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 656, 3085 |
| AccI | GTMKAC | 1 cut(s) | 200 |
| AccII | CGCG | 1 cut(s) | 1285 |
| AccIII | TCCGGA | 1 cut(s) | 508 |
| AciI | CCGC | 3 cut(s) | 946, 1215, 2608 |
| AclWI | GGATC | 6 cut(s) | 185, 890, 1541, 1908, 2534, 2972 |
| AcoI | YGGCCR | 2 cut(s) | 780, 974 |
| AcsI | RAATTY | 6 cut(s) | 346, 529, 538, 1030, 1162, 2324 |
| AcuI | CTGAAG | 3 cut(s) | 393, 1785, 2427 |
| AfaI | GTAC | 7 cut(s) | 69, 397, 1530, 1863, 2339, 2453, 2731 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 656, 1220, 2614, 3071, 3085 |
| AflII | CTTAAG | 2 cut(s) | 557, 2528 |
| AflIII | ACRYGT | 5 cut(s) | 501, 644, 2649, 2865, 3111 |
| AhlI | ACTAGT | 1 cut(s) | 2906 |
| AjiI | CACGTC | 1 cut(s) | 645 |
| AjnI | CCWGG | 1 cut(s) | 1054 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 643, 675, 1650, 1682 |
| Alw21I | GWGCWC | 3 cut(s) | 58, 483, 2275 |
| Alw26I | GTCTC | 5 cut(s) | 22, 635, 904, 2625, 2647 |
| Alw44I | GTGCAC | 1 cut(s) | 54 |
| AlwI | GGATC | 6 cut(s) | 185, 890, 1541, 1908, 2534, 2972 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 422, 2495 |
| Aor13HI | TCCGGA | 1 cut(s) | 508 |
| AoxI | GGCC | 4 cut(s) | 780, 974, 3000, 3195 |
| ApaLI | GTGCAC | 1 cut(s) | 54 |
| ApeKI | GCWGC | 2 cut(s) | 609, 1454 |
| ApoI | RAATTY | 6 cut(s) | 346, 529, 538, 1030, 1162, 2324 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 234 |
| Asp718I | GGTACC | 1 cut(s) | 1861 |
| AspLEI | GCGC | 1 cut(s) | 729 |
| AspS9I | GGNCC | 4 cut(s) | 2000, 2198, 2672, 2875 |
| AsuC2I | CCSGG | 1 cut(s) | 1071 |
| AsuHPI | GGTGA | 5 cut(s) | 233, 1439, 2150, 2845, 3170 |
| AvaII | GGWCC | 4 cut(s) | 2000, 2198, 2672, 2875 |
| BaeGI | GKGCMC | 1 cut(s) | 58 |
| BalI | TGGCCA | 2 cut(s) | 782, 976 |
| BanI | GGYRCC | 2 cut(s) | 1861, 2798 |
| BanII | GRGCYC | 1 cut(s) | 483 |
| BbsI | GAAGAC | 2 cut(s) | 2433, 2753 |
| Bbv12I | GWGCWC | 3 cut(s) | 58, 483, 2275 |
| BbvI | GCAGC | 2 cut(s) | 596, 1466 |
| BccI | CCATC | 9 cut(s) | 40, 302, 815, 923, 1379, 1697, 1862, 2848, 2924 |
| BceAI | ACGGC | 2 cut(s) | 1285, 1576 |
| BciT130I | CCWGG | 1 cut(s) | 1056 |
| BcnI | CCSGG | 1 cut(s) | 1071 |
| BcoDI | GTCTC | 5 cut(s) | 22, 635, 904, 2625, 2647 |
| BcuI | ACTAGT | 1 cut(s) | 2906 |
| BfaI | CTAG | 7 cut(s) | 873, 960, 2051, 2187, 2739, 2849, 2907 |
| BfmI | CTRYAG | 1 cut(s) | 423 |
| BfrI | CTTAAG | 2 cut(s) | 557, 2528 |
| BfuAI | ACCTGC | 4 cut(s) | 160, 664, 1242, 2958 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2553 |
| BisI | GCNGC | 2 cut(s) | 610, 1455 |
| BlpI | GCTNAGC | 2 cut(s) | 953, 2496 |
| BlsI | GCNGC | 2 cut(s) | 611, 1456 |
| Bme1390I | CCNGG | 2 cut(s) | 1056, 1071 |
| Bme18I | GGWCC | 4 cut(s) | 2000, 2198, 2672, 2875 |
| BmgBI | CACGTC | 1 cut(s) | 645 |
| BmgT120I | GGNCC | 4 cut(s) | 2000, 2198, 2672, 2875 |
| BmiI | GGNNCC | 6 cut(s) | 1863, 2606, 2800, 2876, 2877, 3077 |
| BmrFI | CCNGG | 2 cut(s) | 1056, 1071 |
| BmrI | ACTGGG | 1 cut(s) | 2636 |
| BmsI | GCATC | 7 cut(s) | 580, 808, 819, 1141, 2568, 2962, 3094 |
| BmuI | ACTGGG | 1 cut(s) | 2636 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1930 |
| BpiI | GAAGAC | 2 cut(s) | 2433, 2753 |
| BpmI | CTGGAG | 1 cut(s) | 1779 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 953, 2496 |
| BpuEI | CTTGAG | 4 cut(s) | 659, 928, 1913, 2138 |
| BpuMI | CCSGG | 1 cut(s) | 1071 |
| BsaI | GGTCTC | 1 cut(s) | 22 |
| BsaJI | CCNNGG | 4 cut(s) | 217, 1007, 1055, 1412 |
| BsaWI | WCCGGW | 1 cut(s) | 508 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1128, 1158, 2516, 2546 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 656, 1220, 2614, 3071, 3085 |
| Bse1I | ACTGG | 5 cut(s) | 319, 839, 977, 1970, 2631 |
| Bse3DI | GCAATG | 1 cut(s) | 1673 |
| BseAI | TCCGGA | 1 cut(s) | 508 |
| BseBI | CCWGG | 1 cut(s) | 1056 |
| BseDI | CCNNGG | 4 cut(s) | 217, 1007, 1055, 1412 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 656, 1220, 2614, 3071, 3085 |
| BseMI | GCAATG | 1 cut(s) | 1673 |
| BseMII | CTCAG | 3 cut(s) | 906, 2487, 2502 |
| BseNI | ACTGG | 5 cut(s) | 319, 839, 977, 1970, 2631 |
| BseRI | GAGGAG | 2 cut(s) | 473, 2537 |
| BseSI | GKGCMC | 1 cut(s) | 58 |
| BseXI | GCAGC | 2 cut(s) | 596, 1466 |
| Bsh1236I | CGCG | 1 cut(s) | 1285 |
| BshFI | GGCC | 4 cut(s) | 782, 976, 3002, 3197 |
| BshNI | GGYRCC | 2 cut(s) | 1861, 2798 |
| BsiHKAI | GWGCWC | 3 cut(s) | 58, 483, 2275 |
| BsiSI | CCGG | 2 cut(s) | 509, 1071 |
| BslFI | GGGAC | 2 cut(s) | 1918, 2861 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 656, 1220, 2614, 3071, 3085 |
| BsmAI | GTCTC | 5 cut(s) | 22, 635, 904, 2625, 2647 |
| BsmBI | CGTCTC | 1 cut(s) | 635 |
| BsmFI | GGGAC | 2 cut(s) | 1918, 2861 |
| BsnI | GGCC | 4 cut(s) | 782, 976, 3002, 3197 |
| Bso31I | GGTCTC | 1 cut(s) | 22 |
| Bsp1286I | GDGCHC | 3 cut(s) | 58, 483, 2275 |
| Bsp13I | TCCGGA | 1 cut(s) | 508 |
| Bsp1407I | TGTACA | 3 cut(s) | 67, 1528, 2729 |
| Bsp143I | GATC | 8 cut(s) | 105, 190, 895, 1286, 1546, 1900, 2539, 2977 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 953, 2496 |
| Bsp19I | CCATGG | 2 cut(s) | 217, 1007 |
| BspACI | CCGC | 3 cut(s) | 946, 1215, 2608 |
| BspANI | GGCC | 4 cut(s) | 782, 976, 3002, 3197 |
| BspCNI | CTCAG | 3 cut(s) | 905, 2488, 2501 |
| BspEI | TCCGGA | 1 cut(s) | 508 |
| BspFNI | CGCG | 1 cut(s) | 1285 |
| BspHI | TCATGA | 1 cut(s) | 1354 |
| BspLI | GGNNCC | 6 cut(s) | 1863, 2606, 2800, 2876, 2877, 3077 |
| BspMI | ACCTGC | 4 cut(s) | 160, 664, 1242, 2958 |
| BspPI | GGATC | 6 cut(s) | 185, 890, 1541, 1908, 2534, 2972 |
| BspT107I | GGYRCC | 2 cut(s) | 1861, 2798 |
| BspTI | CTTAAG | 2 cut(s) | 557, 2528 |
| BspTNI | GGTCTC | 1 cut(s) | 22 |
| BsrDI | GCAATG | 1 cut(s) | 1673 |
| BsrGI | TGTACA | 3 cut(s) | 67, 1528, 2729 |
| BsrI | ACTGG | 5 cut(s) | 319, 839, 977, 1970, 2631 |
| BssECI | CCNNGG | 4 cut(s) | 217, 1007, 1055, 1412 |
| BssMI | GATC | 8 cut(s) | 105, 190, 895, 1286, 1546, 1900, 2539, 2977 |
| BssNAI | GTATAC | 1 cut(s) | 201 |
| BssT1I | CCWWGG | 3 cut(s) | 217, 1007, 1412 |
| Bst1107I | GTATAC | 1 cut(s) | 201 |
| Bst2UI | CCWGG | 1 cut(s) | 1056 |
| Bst4CI | ACNGT | 1 cut(s) | 424 |
| Bst6I | CTCTTC | 2 cut(s) | 1761, 2799 |
| BstAFI | CTTAAG | 2 cut(s) | 557, 2528 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1274 |
| BstAUI | TGTACA | 3 cut(s) | 67, 1528, 2729 |
| BstC8I | GCNNGC | 5 cut(s) | 852, 950, 2114, 2583, 2664 |
| BstDEI | CTNAG | 6 cut(s) | 892, 953, 1904, 2305, 2488, 2496 |
| BstDSI | CCRYGG | 2 cut(s) | 217, 1007 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3069 |
| BstFNI | CGCG | 1 cut(s) | 1285 |
| BstHHI | GCGC | 1 cut(s) | 729 |
| BstKTI | GATC | 8 cut(s) | 108, 193, 898, 1289, 1549, 1903, 2542, 2980 |
| BstMAI | GTCTC | 5 cut(s) | 22, 635, 904, 2625, 2647 |
| BstMBI | GATC | 8 cut(s) | 105, 190, 895, 1286, 1546, 1900, 2539, 2977 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 954, 1265, 1274, 1451, 2183, 2553, 2999 |
| BstNI | CCWGG | 1 cut(s) | 1056 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1930 |
| BstSCI | CCNGG | 2 cut(s) | 1054, 1069 |
| BstSFI | CTRYAG | 1 cut(s) | 423 |
| BstSLI | GKGCMC | 1 cut(s) | 58 |
| BstUI | CGCG | 1 cut(s) | 1285 |
| BstV1I | GCAGC | 2 cut(s) | 596, 1466 |
| BstV2I | GAAGAC | 2 cut(s) | 2433, 2753 |
| BstX2I | RGATCY | 4 cut(s) | 190, 895, 1900, 2539 |
| BstYI | RGATCY | 4 cut(s) | 190, 895, 1900, 2539 |
| BstZ17I | GTATAC | 1 cut(s) | 201 |
| BsuRI | GGCC | 4 cut(s) | 782, 976, 3002, 3197 |
| BtgI | CCRYGG | 2 cut(s) | 217, 1007 |
| BtrI | CACGTC | 1 cut(s) | 645 |
| BtsIMutI | CAGTG | 2 cut(s) | 1210, 2624 |
| BveI | ACCTGC | 4 cut(s) | 160, 664, 1242, 2958 |
| Cac8I | GCNNGC | 5 cut(s) | 852, 950, 2114, 2583, 2664 |
| CaiI | CAGNNNCTG | 2 cut(s) | 422, 2495 |
| CciI | TCATGA | 1 cut(s) | 1354 |
| CfoI | GCGC | 1 cut(s) | 729 |
| Cfr13I | GGNCC | 4 cut(s) | 2000, 2198, 2672, 2875 |
| Csp6I | GTAC | 7 cut(s) | 68, 396, 1529, 1862, 2338, 2452, 2730 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 888, 923 |
| CviQI | GTAC | 7 cut(s) | 68, 396, 1529, 1862, 2338, 2452, 2730 |
| DdeI | CTNAG | 6 cut(s) | 892, 953, 1904, 2305, 2488, 2496 |
| DpnI | GATC | 8 cut(s) | 107, 192, 897, 1288, 1548, 1902, 2541, 2979 |
| DpnII | GATC | 8 cut(s) | 105, 190, 895, 1286, 1546, 1900, 2539, 2977 |
| DraI | TTTAAA | 2 cut(s) | 1728, 2887 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1713, 2639 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1713, 2639 |
| EaeI | YGGCCR | 2 cut(s) | 780, 974 |
| Eam1104I | CTCTTC | 2 cut(s) | 1761, 2799 |
| EarI | CTCTTC | 2 cut(s) | 1761, 2799 |
| EciI | GGCGGA | 1 cut(s) | 935 |
| Ecl136II | GAGCTC | 1 cut(s) | 481 |
| Eco130I | CCWWGG | 3 cut(s) | 217, 1007, 1412 |
| Eco24I | GRGCYC | 1 cut(s) | 483 |
| Eco31I | GGTCTC | 1 cut(s) | 22 |
| Eco32I | GATATC | 1 cut(s) | 878 |
| Eco47I | GGWCC | 4 cut(s) | 2000, 2198, 2672, 2875 |
| Eco53kI | GAGCTC | 1 cut(s) | 481 |
| Eco57I | CTGAAG | 3 cut(s) | 393, 1785, 2427 |
| EcoICRI | GAGCTC | 1 cut(s) | 481 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3069 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2875 |
| EcoRI | GAATTC | 2 cut(s) | 529, 538 |
| EcoRII | CCWGG | 1 cut(s) | 1054 |
| EcoRV | GATATC | 1 cut(s) | 878 |
| EcoT14I | CCWWGG | 3 cut(s) | 217, 1007, 1412 |
| EcoT22I | ATGCAT | 5 cut(s) | 595, 1760, 2114, 2517, 2583 |
| EcoT38I | GRGCYC | 1 cut(s) | 483 |
| ErhI | CCWWGG | 3 cut(s) | 217, 1007, 1412 |
| Esp3I | CGTCTC | 1 cut(s) | 635 |
| FaqI | GGGAC | 2 cut(s) | 1918, 2861 |
| FauI | CCCGC | 1 cut(s) | 1222 |
| FauNDI | CATATG | 2 cut(s) | 1559, 3118 |
| FblI | GTMKAC | 1 cut(s) | 200 |
| Fnu4HI | GCNGC | 2 cut(s) | 610, 1455 |
| FriOI | GRGCYC | 1 cut(s) | 483 |
| Fsp4HI | GCNGC | 2 cut(s) | 610, 1455 |
| FspBI | CTAG | 7 cut(s) | 873, 960, 2051, 2187, 2739, 2849, 2907 |
| GlaI | GCGC | 1 cut(s) | 728 |
| GluI | GCNGC | 2 cut(s) | 610, 1455 |
| GsuI | CTGGAG | 1 cut(s) | 1779 |
| HaeIII | GGCC | 4 cut(s) | 782, 976, 3002, 3197 |
| HapII | CCGG | 2 cut(s) | 509, 1071 |
| HhaI | GCGC | 1 cut(s) | 729 |
| Hin6I | GCGC | 1 cut(s) | 727 |
| HinP1I | GCGC | 1 cut(s) | 727 |
| HincII | GTYRAC | 3 cut(s) | 1041, 1482, 2947 |
| HindII | GTYRAC | 3 cut(s) | 1041, 1482, 2947 |
| HindIII | AAGCTT | 2 cut(s) | 444, 467 |
| HinfI | GANTC | 8 cut(s) | 845, 860, 1926, 2155, 2390, 2407, 2836, 2845 |
| HpaII | CCGG | 2 cut(s) | 509, 1071 |
| HphI | GGTGA | 5 cut(s) | 233, 1439, 2150, 2845, 3170 |
| HpyCH4III | ACNGT | 1 cut(s) | 424 |
| HpyCH4IV | ACGT | 7 cut(s) | 261, 644, 667, 685, 1043, 2867, 3035 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 954, 1265, 1274, 1451, 2183, 2553, 2999 |
| HpyF3I | CTNAG | 6 cut(s) | 892, 953, 1904, 2305, 2488, 2496 |
| HpySE526I | ACGT | 7 cut(s) | 261, 644, 667, 685, 1043, 2867, 3035 |
| HspAI | GCGC | 1 cut(s) | 727 |
| KflI | GGGWCCC | 1 cut(s) | 2875 |
| Kpn2I | TCCGGA | 1 cut(s) | 508 |
| KpnI | GGTACC | 1 cut(s) | 1865 |
| Kzo9I | GATC | 8 cut(s) | 105, 190, 895, 1286, 1546, 1900, 2539, 2977 |
| LmnI | GCTCC | 4 cut(s) | 382, 486, 2524, 2610 |
| Lsp1109I | GCAGC | 2 cut(s) | 596, 1466 |
| LweI | GCATC | 7 cut(s) | 580, 808, 819, 1141, 2568, 2962, 3094 |
| MaeI | CTAG | 7 cut(s) | 873, 960, 2051, 2187, 2739, 2849, 2907 |
| MaeII | ACGT | 7 cut(s) | 261, 644, 667, 685, 1043, 2867, 3035 |
| MaeIII | GTNAC | 7 cut(s) | 262, 552, 988, 1223, 1907, 2425, 2468 |
| MalI | GATC | 8 cut(s) | 107, 192, 897, 1288, 1548, 1902, 2541, 2979 |
| MboI | GATC | 8 cut(s) | 105, 190, 895, 1286, 1546, 1900, 2539, 2977 |
| MfeI | CAATTG | 2 cut(s) | 1961, 2394 |
| MflI | RGATCY | 4 cut(s) | 190, 895, 1900, 2539 |
| MhlI | GDGCHC | 3 cut(s) | 58, 483, 2275 |
| MlsI | TGGCCA | 2 cut(s) | 782, 976 |
| MluNI | TGGCCA | 2 cut(s) | 782, 976 |
| MlyI | GAGTC | 2 cut(s) | 869, 1920 |
| MmeI | TCCRAC | 1 cut(s) | 2195 |
| Mox20I | TGGCCA | 2 cut(s) | 782, 976 |
| Mph1103I | ATGCAT | 5 cut(s) | 595, 1760, 2114, 2517, 2583 |
| MroI | TCCGGA | 1 cut(s) | 508 |
| MroXI | GAANNNNTTC | 1 cut(s) | 234 |
| MscI | TGGCCA | 2 cut(s) | 782, 976 |
| MslI | CAYNNNNRTG | 2 cut(s) | 252, 3203 |
| Msp20I | TGGCCA | 2 cut(s) | 782, 976 |
| MspA1I | CMGCKG | 2 cut(s) | 1457, 2420 |
| MspCI | CTTAAG | 2 cut(s) | 557, 2528 |
| MspI | CCGG | 2 cut(s) | 509, 1071 |
| MspR9I | CCNGG | 2 cut(s) | 1056, 1071 |
| MunI | CAATTG | 2 cut(s) | 1961, 2394 |
| MvaI | CCWGG | 1 cut(s) | 1056 |
| MvnI | CGCG | 1 cut(s) | 1285 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 954, 1265, 1274, 1451, 2183, 2553, 2999 |
| NciI | CCSGG | 1 cut(s) | 1071 |
| NcoI | CCATGG | 2 cut(s) | 217, 1007 |
| NdeI | CATATG | 2 cut(s) | 1559, 3118 |
| NdeII | GATC | 8 cut(s) | 105, 190, 895, 1286, 1546, 1900, 2539, 2977 |
| NlaIV | GGNNCC | 6 cut(s) | 1863, 2606, 2800, 2876, 2877, 3077 |
| NmuCI | GTSAC | 3 cut(s) | 262, 1907, 2425 |
| NsiI | ATGCAT | 5 cut(s) | 595, 1760, 2114, 2517, 2583 |
| PaeI | GCATGC | 2 cut(s) | 2116, 2585 |
| PagI | TCATGA | 1 cut(s) | 1354 |
| PciI | ACATGT | 3 cut(s) | 501, 2649, 3111 |
| PdmI | GAANNNNTTC | 1 cut(s) | 234 |
| PfeI | GAWTC | 6 cut(s) | 845, 2155, 2390, 2407, 2836, 2845 |
| PflFI | GACNNNGTC | 1 cut(s) | 2437 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 656, 3085 |
| PkrI | GCNGC | 2 cut(s) | 611, 1456 |
| PleI | GAGTC | 2 cut(s) | 868, 1920 |
| PpsI | GAGTC | 2 cut(s) | 868, 1920 |
| PpuMI | RGGWCCY | 1 cut(s) | 2875 |
| PscI | ACATGT | 3 cut(s) | 501, 2649, 3111 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1930 |
| PsiI | TTATAA | 2 cut(s) | 179, 3138 |
| Psp124BI | GAGCTC | 1 cut(s) | 483 |
| Psp5II | RGGWCCY | 1 cut(s) | 2875 |
| Psp6I | CCWGG | 1 cut(s) | 1054 |
| PspGI | CCWGG | 1 cut(s) | 1054 |
| PspN4I | GGNNCC | 6 cut(s) | 1863, 2606, 2800, 2876, 2877, 3077 |
| PspPI | GGNCC | 4 cut(s) | 2000, 2198, 2672, 2875 |
| PspPPI | RGGWCCY | 1 cut(s) | 2875 |
| PstNI | CAGNNNCTG | 2 cut(s) | 422, 2495 |
| PsuI | RGATCY | 4 cut(s) | 190, 895, 1900, 2539 |
| PsyI | GACNNNGTC | 1 cut(s) | 2437 |
| PvuII | CAGCTG | 2 cut(s) | 1457, 2420 |
| RsaI | GTAC | 7 cut(s) | 69, 397, 1530, 1863, 2339, 2453, 2731 |
| RsaNI | GTAC | 7 cut(s) | 68, 396, 1529, 1862, 2338, 2452, 2730 |
| RseI | CAYNNNNRTG | 2 cut(s) | 252, 3203 |
| SacI | GAGCTC | 1 cut(s) | 483 |
| SatI | GCNGC | 2 cut(s) | 610, 1455 |
| Sau3AI | GATC | 8 cut(s) | 105, 190, 895, 1286, 1546, 1900, 2539, 2977 |
| Sau96I | GGNCC | 4 cut(s) | 2000, 2198, 2672, 2875 |
| SchI | GAGTC | 2 cut(s) | 869, 1920 |
| ScrFI | CCNGG | 2 cut(s) | 1056, 1071 |
| SduI | GDGCHC | 3 cut(s) | 58, 483, 2275 |
| SfaNI | GCATC | 7 cut(s) | 580, 808, 819, 1141, 2568, 2962, 3094 |
| SfcI | CTRYAG | 1 cut(s) | 423 |
| SinI | GGWCC | 4 cut(s) | 2000, 2198, 2672, 2875 |
| SmiI | ATTTAAAT | 1 cut(s) | 2887 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 252, 3203 |
| SmlI | CTYRAG | 6 cut(s) | 557, 638, 907, 1928, 2117, 2528 |
| SmoI | CTYRAG | 6 cut(s) | 557, 638, 907, 1928, 2117, 2528 |
| SpeI | ACTAGT | 1 cut(s) | 2906 |
| SphI | GCATGC | 2 cut(s) | 2116, 2585 |
| SsiI | CCGC | 3 cut(s) | 946, 1215, 2608 |
| SspI | AATATT | 1 cut(s) | 1885 |
| SspMI | CTAG | 7 cut(s) | 873, 960, 2051, 2187, 2739, 2849, 2907 |
| SstI | GAGCTC | 1 cut(s) | 483 |
| StyD4I | CCNGG | 2 cut(s) | 1054, 1069 |
| StyI | CCWWGG | 3 cut(s) | 217, 1007, 1412 |
| SwaI | ATTTAAAT | 1 cut(s) | 2887 |
| TaaI | ACNGT | 1 cut(s) | 424 |
| TaiI | ACGT | 7 cut(s) | 264, 647, 670, 688, 1046, 2870, 3038 |
| TaqI | TCGA | 8 cut(s) | 26, 97, 542, 579, 1022, 1851, 2269, 2506 |
| TaqII | GACCGA | 2 cut(s) | 2689, 2779 |
| TatI | WGTACW | 4 cut(s) | 67, 1528, 2337, 2729 |
| TfiI | GAWTC | 6 cut(s) | 845, 2155, 2390, 2407, 2836, 2845 |
| TscAI | CASTG | 2 cut(s) | 1210, 2631 |
| TseFI | GTSAC | 3 cut(s) | 262, 1907, 2425 |
| TseI | GCWGC | 2 cut(s) | 609, 1454 |
| Tsp45I | GTSAC | 3 cut(s) | 262, 1907, 2425 |
| TspGWI | ACGGA | 1 cut(s) | 2391 |
| TspRI | CASTG | 2 cut(s) | 1210, 2631 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2437 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 656, 3085 |
| Vha464I | CTTAAG | 2 cut(s) | 557, 2528 |
| VneI | GTGCAC | 1 cut(s) | 54 |
| VpaK11BI | GGWCC | 4 cut(s) | 2000, 2198, 2672, 2875 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3069 |
| XapI | RAATTY | 6 cut(s) | 346, 529, 538, 1030, 1162, 2324 |
| XbaI | TCTAGA | 1 cut(s) | 959 |
| XmiI | GTMKAC | 1 cut(s) | 200 |
| XmnI | GAANNNNTTC | 1 cut(s) | 234 |
| XspI | CTAG | 7 cut(s) | 873, 960, 2051, 2187, 2739, 2849, 2907 |
| Zsp2I | ATGCAT | 5 cut(s) | 595, 1760, 2114, 2517, 2583 |