Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000015

Physical Location & Seq

Genomic Coordinates Reverse (-)

45076408 .. 45086088

Gene Structure 9681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G022860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3513 bp

ATGTGGAATGACTATGTAAACATGCCTTGGACCTCACACGGCGAGCAATTACCCCTAATAAATGAACTTGATGTAGCAAGTTCTTCCGCCCCACAAGATATTATGCCAGAAGATGATATGGCTAATATGTTGCAGGATGCTTTTGGGTTTCATGATGATACCATGCCTCCGTCCTCTTCAGAGGCAATTGGAGGTCATGAATTTGGGCCAACCCCAGATGCTAATAAATTCTACAAGCTACTAGACGATGCAGATACTGATCTTTTTCCTGGAGCACGAATGAAGAAGCTTGAATTTCTAATTTTACGTTATTTTCCATTGGGTCCTCGGTTGCAACGTTTATATATGTCACGCCATACTGCAGATTCAATGTCATGGCATTCAAAACTGAGGACTAAAGATGGGGTACTCCGACATCCTGCTGATTCTCCAGCTTGGGCAAAGTTAGATGAAAAATATCCAGAATTTGGTAGCGAGTGCCGTAATGTTCGTCTAGGTTTGGCTAGTGATGGATTTAACCCATTTGGAATGATGAGCTCTTCACATAGTACGTGGCCTGTTGTGATGTCTGTCTATAATCTACCTCCTTGGTTATGCATGAAGCAACCATACTTGTTCTTGTCATTGCTCATACCAGGCCCAAAAGGACCCGGAAATAATATTGATGTGTATTTACAACCACTTGTGGAAGAGCTAAAGATGCTCTGGACTGAAGGGATTGAGACATATGATGCATTCAAGAAAGAGAAATTTACCATGCGAGCTGCTGTGTTGTGGACTATAAATGATTTTCCTGCATATGCCATGTTATCCGGTTATAGCACAAAAGGTTACAAAGCTTGTCCAGTCTGTGCTGAAGATACAGAGTCTGTTAGGCTAGTGAATTGTCAAAAAGAATGTTATATGGGACATCGAAGATGGTTGAATGATAATCACCGGTACCGTGGGTGGAAAAATAATTTCAATGGTGCTGCTGAACGAAGGCCTCGCCCGAAGTCTATGACGGGTTCAGATTGTCTACGAGCAACGCATGGTTTGACAATTCAATTTGGGAATGGGAAGAGGAAGAAAATTCCTCGAAAACGTAAGCGTATATCTGAAGGACCACCCGAGCAGGATTTTGGTAATTGGAGGAAGAGAAGTATATTTTTTGAATTGCCTTATTGGGAGCATCTTTTATTGCGCCATAATCTAGATGTCATGCATATCGAGAAGAATGTCACTGATAGTGTTGTTGGCACCTTGCTTGGAGTAAAAGGGAAAAACAAGGATAGTAAAAATGCTCGAAACGACATGGTTCTTCTCAATGTAAAGAATGGTCTTCATCCTGTGGCTGAAGGTGACAAACTAAGATATCCTCCAGCTAACTTTAATTTGCTAAAGGAAGAGAAAACGATGATATGTGAAGTTATGGCTGACTATCGACCACCGGATGGCTGGTCTTCCAATATTAGCAAATGTGTCCGAGTTGAAGAAAGAAAACTAATTGGGTTAAAGAGTCACGATTGTCATATTTTGATGCAATATTTGTTACCAATTGCCATTCGTCGACCGATTAAGTGTAAAACACTTATTAAAGTGCTATTAGAGTTAAGTGGATTTTTCAGACAATTGAAGATTGCCTTAACGTTATGTGACTTGGAGTTTATAATGCCACCCTCATTTTTTGACATAATGGAGCACTTACCTATTCATTTGGCTGATGAAGCAGCAATAGGAGGCCCAGTTCAGTATCGATGGATGTATCCTATCGAAAGGTACTTGCATACTTTGAAAGAGTACGTTCGCAATAAGGCTTATCCCGAAGGAAGCATTGCAGAAGGATACATAATAGATGAGTGTCTCTCATTTTGTACTATGTATTTATCAGGTGATACTGATTCAGGACGAACTAGACTATCTCGTAATGCTGATGACCCTAATAACATCGTCAGACCTGGATTGCCACTGTTTGTTACAAAGGGACGAGCTTTAGAAAGTCCACAAAAGTTTGTGTTAACTGATGAGGAGAAGCAACGAGCTCATACGCATGTGCTGCTTAACTGTCCAGAAATTGACAACCACCTGAAGGAACATGTGGAAATAGAGAAAGGGAAAAGAGGTCGACGTTCTTTGCAGGACTCGGAAAGACTAGCAAATTTATCTTTTGCCAAGTATCTTAAGAGCACGATAAGAGAAAAGATTAATCAAGGTGATAGGAACATTGATCCTGATATTTGTGCTTTAGCTGAAGGACCAGACAATGAAGCCAAACGGTACAAAAAATATGTCATGAATGGTTGTCGCTTTCATGTGAAGTCAGTTGATACTGGTTCTACATATCAAAATAGTGGTATTTTTGTCAATGCTGGAAGTAATTGCTATGCTACTGTCAATGACCGCCAACCGAGAGATGACATAAACGACTATTATGGCGTATTGACAGATATCATAGAATTGGACTATCACAATGGGAGGAAAGTATTGCTATTTGAAGGGGATTGGATTGATGGTCGGACCCAACATCGAGGATTAAAAAAGGATGAGTTTGGATTCATATTGATTAGACATAGCTTCATCCAATGCCCAGTCTCTAGAATGTCTAATGAAGACATAGATTTCCAATTGAATGATGATGTCATGGGATCGTTGAATGACCATGTCCAATATGATGATGGTGAAACTCAGGACGTAGGTCGTTTGTTTGTGAATGAACAAACAGCAAGTTCCCAAAACAGAAATAGTGGAGCTAATGAGAGTAATAAGAAAAACACAAGAGGGAAATCAATTATTAAATGGGGTGTGAATGGAGTGCGAGAAAGAGTTAAGTGGGGAAAATCTGGTGTACCAGTGGCACCAAGGGATAAATGTGCACACTACTCAAAATTCATTGGTAGTTTAGCGGCTGACTGTGGATATTATCCTATTGACGTCAATGATTGGCGGCTCTTTGAGGAGGACGTCCATAGCAAGGCATGGACACGTATTGAGGGGACAATTGATTGGACAGACCAAGCAACTTCCGCTAAAAGATCGAAAATCAAGTCGTACGCATTTGAAAGACTTGCAGATCGTTGGAAGCAACACAAGTCAAACCTGAAAAAAGTGTTTTGGTTACCTAACCAAGGGACTGCTGACCTTAGAGAAGATATCTATGCAGAGGTTCTTGGGGTAGAGAAGCGTAACCGAGTGAGGGGTCTTGGAGCGGGTGTCTGCTGGCGTGATGTTCCATATGTTCATACCGAGAAAAGAGGTGTTTCAAGAGTTGTGGAAGCATTGACAGCAACAATTCAAGAACAACGCATGGAGACCGCAAGATTGAGGAGTGAAGCTGAAAAAGAGAGAATTGAAGCTGCCCAAAGAGAGGAAAGAATTAGAAAGGAAGCTGCTGACCTGGACAAAAAGTTGACAGCCCAAATGGAGCAGTTTAAGATACAGCAAGAGGCAATGATGGCAAGGAAGTTGAAGGAACTAGCAACACTTGAAATGGGAAAAACATTGGAAGAAAGAGTTAAGAGTGGATCTAATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0000781 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0008283 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031123 GO:0031124 GO:0031503 GO:0031974 GO:0031981 GO:0031990 GO:0032991 GO:0033036 GO:0033554 GO:0034605 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044403 GO:0044417 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044766 GO:0045184 GO:0046483 GO:0046784 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051701 GO:0051704 GO:0051716 GO:0051836 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098687 GO:1901360 GO:1902579

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

THOC7

Protein Analysis

1170

Amino Acids

134.19

Weight (kDa)

8.55

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_21	PF02992	134 - 343	4.1e-99	Transposase family tnp2
DUF4218	PF13960	539 - 636	3.1e-41	Domain of unknown function (DUF4218)
DUF4216	PF13952	811 - 850	5.7e-06	Domain of unknown function (DUF4216)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000015)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02311 FvH4_1g13961 FvH4_1g22120 FvH4_1g22121 FvH4_1g22122 FvH4_1g23803 FvH4_1g23921 FvH4_1g28422 FvH4_1g29232 FvH4_1g29711 FvH4_1g29805 FvH4_1g29806 FvH4_2g00032 FvH4_2g00812 FvH4_2g02271 FvH4_2g02272 FvH4_2g02785 FvH4_2g04944 FvH4_2g04945 FvH4_2g07143 FvH4_2g07144 FvH4_2g07753 FvH4_2g07991 FvH4_2g08941 FvH4_2g11271 FvH4_2g13851 FvH4_2g14771 FvH4_2g19023 FvH4_2g20441 FvH4_2g21542 FvH4_3g14320 FvH4_3g16301 FvH4_3g16302 FvH4_3g18963 FvH4_3g21083 FvH4_3g21361 FvH4_3g22001 FvH4_3g22111 FvH4_3g22562 FvH4_3g23523 FvH4_3g25312 FvH4_3g26061 FvH4_3g29331 FvH4_3g29831 FvH4_3g30391 FvH4_3g30443 FvH4_3g30614 FvH4_3g31714 FvH4_3g31743 FvH4_3g32192 FvH4_3g32261 FvH4_3g32804 FvH4_3g33044 FvH4_3g33045 FvH4_3g33093 FvH4_3g36581 FvH4_3g36582 FvH4_3g41971 FvH4_4g03322 FvH4_4g04242 FvH4_4g05702 FvH4_4g08648 FvH4_4g09213 FvH4_4g10051 FvH4_4g10253 FvH4_4g10471 FvH4_4g12773 FvH4_4g13831 FvH4_4g13832 FvH4_4g13891 FvH4_4g14282 FvH4_4g14283 FvH4_4g14443 FvH4_4g14562 FvH4_4g14563 FvH4_4g15322 FvH4_4g16172 FvH4_4g16174 FvH4_4g19121 FvH4_4g25941 FvH4_5g03061 FvH4_5g06092 FvH4_5g08081 FvH4_5g08082 FvH4_5g18422 FvH4_5g18423 FvH4_5g19272 FvH4_5g19471 FvH4_5g21221 FvH4_5g24272 FvH4_5g26171 FvH4_5g30952 FvH4_5g31512 FvH4_5g31513 FvH4_5g35083 FvH4_5g35211 FvH4_5g37211 FvH4_5g37212 FvH4_6g06671 FvH4_6g13841 FvH4_6g17381 FvH4_6g20142 FvH4_6g21813 FvH4_6g21900 FvH4_6g22901 FvH4_6g23254 FvH4_6g23352 FvH4_6g23592 FvH4_6g28112 FvH4_6g30093 FvH4_6g30771 FvH4_6g30772 FvH4_6g31292 FvH4_6g31483 FvH4_6g33071 FvH4_6g33481 FvH4_6g34821 FvH4_6g37043 FvH4_6g39685 FvH4_6g40311 FvH4_6g43082 FvH4_7g00291 FvH4_7g01731 FvH4_7g02153 FvH4_7g02991 FvH4_7g06091 FvH4_7g06092 FvH4_7g07224 FvH4_7g07901 FvH4_7g10641 FvH4_7g13281 FvH4_7g16902 FvH4_7g17991 FvH4_c18g00010
malus_domestica	MD03G1146400.v1.1 MD12G1219800.v1.1
prunus_persica	Prupe.6G012900_v2.0.a1 Prupe.6G136200_v2.0.a1
pyrus_communis	pycom02g17950 pycom03g09510 pycom05g02880 pycom07g13380 pycom07g21950 pycom10g11450 pycom10g11460 pycom10g12890 pycom11g15000 pycom12646g00130 pycom13g21890 pycom17g19360
rosa_chinensis	RchiOBHm_Chr1g0321891 RchiOBHm_Chr1g0321901 RchiOBHm_Chr1g0331761 RchiOBHm_Chr2g0084301 RchiOBHm_Chr2g0095191 RchiOBHm_Chr2g0111791 RchiOBHm_Chr2g0114991 RchiOBHm_Chr2g0127551 RchiOBHm_Chr2g0129601 RchiOBHm_Chr2g0133591 RchiOBHm_Chr2g0136601 RchiOBHm_Chr2g0143321 RchiOBHm_Chr3g0458241 RchiOBHm_Chr3g0483841 RchiOBHm_Chr3g0483851 RchiOBHm_Chr3g0495641 RchiOBHm_Chr4g0408001 RchiOBHm_Chr4g0414211 RchiOBHm_Chr4g0414221 RchiOBHm_Chr4g0415141 RchiOBHm_Chr4g0417061 RchiOBHm_Chr4g0421351 RchiOBHm_Chr4g0433621 RchiOBHm_Chr4g0436001 RchiOBHm_Chr5g0007671 RchiOBHm_Chr5g0020851 RchiOBHm_Chr5g0024741 RchiOBHm_Chr5g0040541 RchiOBHm_Chr5g0064651 RchiOBHm_Chr5g0064781 RchiOBHm_Chr5g0066161 RchiOBHm_Chr5g0067601 RchiOBHm_Chr5g0067611 RchiOBHm_Chr6g0264621 RchiOBHm_Chr6g0271091 RchiOBHm_Chr6g0274521 RchiOBHm_Chr6g0278261 RchiOBHm_Chr7g0184931 RchiOBHm_Chr7g0231571
rosa_laevigata	RLG00000008333 RLG00000022575 RLG00000022597 RLG00000031744 RLG00000035085
rosa_multiflora	Rmu_co7992550.1_g000001 Rmu_co8010316.1_g000001 Rmu_co8034468.1_g000001 Rmu_co8035868.1_g000001 Rmu_co8070070.1_g000001 Rmu_co8090484.1_g000001 Rmu_co8168904.1_g000001 Rmu_co8187196.1_g000001 Rmu_co8207388.1_g000001 Rmu_co8212806.1_g000001 Rmu_co8240057.1_g000001 Rmu_co8245773.1_g000001 Rmu_co8271583.1_g000001 Rmu_co8319165.1_g000001 Rmu_co8330561.1_g000001 Rmu_co8359235.1_g000001 Rmu_co8362839.1_g000001 Rmu_co8373057.1_g000002 Rmu_co8378597.1_g000001 Rmu_co8400477.1_g000001 Rmu_co8435579.1_g000001 Rmu_sc0000015.1_g000028 Rmu_sc0000055.1_g000001 Rmu_sc0000083.1_g000002 Rmu_sc0000104.1_g000020 Rmu_sc0000105.1_g000010 Rmu_sc0000110.1_g000008 Rmu_sc0000162.1_g000002 Rmu_sc0000353.1_g000016 Rmu_sc0000365.1_g000093 Rmu_sc0000366.1_g000007 Rmu_sc0000509.1_g000004 Rmu_sc0000509.1_g000005 Rmu_sc0000525.1_g000001 Rmu_sc0000565.1_g000038 Rmu_sc0000579.1_g000015 Rmu_sc0000607.1_g000020 Rmu_sc0000623.1_g000006 Rmu_sc0000633.1_g000013 Rmu_sc0000633.1_g000014 Rmu_sc0000690.1_g000050 Rmu_sc0000721.1_g000014 Rmu_sc0000741.1_g000010 Rmu_sc0000741.1_g000015 Rmu_sc0000811.1_g000020 Rmu_sc0000813.1_g000016 Rmu_sc0000814.1_g000011 Rmu_sc0000834.1_g000015 Rmu_sc0000834.1_g000016 Rmu_sc0000868.1_g000001 Rmu_sc0000924.1_g000049 Rmu_sc0000924.1_g000050 Rmu_sc0000928.1_g000031 Rmu_sc0001035.1_g000026 Rmu_sc0001053.1_g000010 Rmu_sc0001063.1_g000011 Rmu_sc0001065.1_g000002 Rmu_sc0001155.1_g000010 Rmu_sc0001192.1_g000004 Rmu_sc0001206.1_g000014 Rmu_sc0001206.1_g000019 Rmu_sc0001211.1_g000079 Rmu_sc0001238.1_g000040 Rmu_sc0001238.1_g000041 Rmu_sc0001248.1_g000007 Rmu_sc0001250.1_g000004 Rmu_sc0001250.1_g000006 Rmu_sc0001293.1_g000019 Rmu_sc0001309.1_g000013 Rmu_sc0001428.1_g000021 Rmu_sc0001428.1_g000022 Rmu_sc0001433.1_g000010 Rmu_sc0001441.1_g000004 Rmu_sc0001441.1_g000005 Rmu_sc0001461.1_g000091 Rmu_sc0001516.1_g000082 Rmu_sc0001580.1_g000018 Rmu_sc0001626.1_g000028 Rmu_sc0001698.1_g000022 Rmu_sc0001698.1_g000024 Rmu_sc0001782.1_g000030 Rmu_sc0001782.1_g000032 Rmu_sc0001849.1_g000047 Rmu_sc0001851.1_g000010 Rmu_sc0001856.1_g000001 Rmu_sc0001891.1_g000004 Rmu_sc0001904.1_g000035 Rmu_sc0001909.1_g000001 Rmu_sc0001916.1_g000013 Rmu_sc0001997.1_g000005 Rmu_sc0002070.1_g000039 Rmu_sc0002144.1_g000034 Rmu_sc0002212.1_g000013 Rmu_sc0002231.1_g000013 Rmu_sc0002232.1_g000008 Rmu_sc0002244.1_g000022 Rmu_sc0002251.1_g000007 Rmu_sc0002253.1_g000011 Rmu_sc0002323.1_g000006 Rmu_sc0002337.1_g000009 Rmu_sc0002451.1_g000025 Rmu_sc0002451.1_g000041 Rmu_sc0002460.1_g000026 Rmu_sc0002472.1_g000020 Rmu_sc0002669.1_g000074 Rmu_sc0002695.1_g000001 Rmu_sc0002695.1_g000003 Rmu_sc0002764.1_g000030 Rmu_sc0002786.1_g000001 Rmu_sc0002824.1_g000028 Rmu_sc0002847.1_g000008 Rmu_sc0002847.1_g000009 Rmu_sc0002986.1_g000061 Rmu_sc0002986.1_g000067 Rmu_sc0002986.1_g000068 Rmu_sc0002988.1_g000011 Rmu_sc0003110.1_g000022 Rmu_sc0003413.1_g000054 Rmu_sc0003413.1_g000058 Rmu_sc0003454.1_g000014 Rmu_sc0003454.1_g000016 Rmu_sc0003465.1_g000038 Rmu_sc0003465.1_g000040 Rmu_sc0003505.1_g000005 Rmu_sc0003505.1_g000028 Rmu_sc0003670.1_g000001 Rmu_sc0003692.1_g000034 Rmu_sc0003840.1_g000015 Rmu_sc0003862.1_g000015 Rmu_sc0003892.1_g000010 Rmu_sc0003981.1_g000014 Rmu_sc0004003.1_g000008 Rmu_sc0004031.1_g000005 Rmu_sc0004074.1_g000001 Rmu_sc0004135.1_g000010 Rmu_sc0004344.1_g000010 Rmu_sc0004344.1_g000011 Rmu_sc0004344.1_g000012 Rmu_sc0004392.1_g000010 Rmu_sc0004424.1_g000011 Rmu_sc0004502.1_g000024 Rmu_sc0004569.1_g000005 Rmu_sc0004602.1_g000056 Rmu_sc0004622.1_g000015 Rmu_sc0004798.1_g000018 Rmu_sc0004811.1_g000014 Rmu_sc0004842.1_g000001 Rmu_sc0004990.1_g000021 Rmu_sc0005023.1_g000029 Rmu_sc0005072.1_g000015 Rmu_sc0005449.1_g000001 Rmu_sc0005654.1_g000010 Rmu_sc0005676.1_g000008 Rmu_sc0005685.1_g000026 Rmu_sc0005913.1_g000020 Rmu_sc0005947.1_g000004 Rmu_sc0006420.1_g000020 Rmu_sc0006450.1_g000003 Rmu_sc0006532.1_g000001 Rmu_sc0006558.1_g000001 Rmu_sc0006583.1_g000017 Rmu_sc0006669.1_g000002 Rmu_sc0006739.1_g000003 Rmu_sc0006746.1_g000012 Rmu_sc0006803.1_g000019 Rmu_sc0006888.1_g000056 Rmu_sc0007341.1_g000014 Rmu_sc0007341.1_g000015 Rmu_sc0007435.1_g000001 Rmu_sc0007486.1_g000005 Rmu_sc0007686.1_g000006 Rmu_sc0007876.1_g000006 Rmu_sc0007888.1_g000006 Rmu_sc0008079.1_g000008 Rmu_sc0008440.1_g000006 Rmu_sc0008633.1_g000007 Rmu_sc0009546.1_g000002 Rmu_sc0010357.1_g000007 Rmu_sc0010385.1_g000003 Rmu_sc0010543.1_g000011 Rmu_sc0011563.1_g000001 Rmu_sc0012228.1_g000002 Rmu_sc0012491.1_g000001 Rmu_sc0012650.1_g000001 Rmu_sc0013205.1_g000006 Rmu_sc0013216.1_g000003 Rmu_sc0014191.1_g000001 Rmu_sc0014895.1_g000001 Rmu_sc0014957.1_g000001 Rmu_sc0015243.1_g000001 Rmu_sc0015746.1_g000001 Rmu_sc0017392.1_g000001 Rmu_sc0018470.1_g000001 Rmu_sc0018623.1_g000006 Rmu_sc0021556.1_g000004 Rmu_sc0022401.1_g000001 Rmu_sc0024611.1_g000001 Rmu_sc0024953.1_g000001 Rmu_sc0025466.1_g000001 Rmu_sc0025892.1_g000001 Rmu_sc0025909.1_g000001 Rmu_sc0026281.1_g000001 Rmu_sc0027327.1_g000001 Rmu_sc0028428.1_g000001 Rmu_sc0029754.1_g000001 Rmu_sc0032120.1_g000001 Rmu_sc0039702.1_g000001 Rmu_ssc0000089.1_g000022 Rmu_ssc0000150.1_g000006 Rmu_ssc0000150.1_g000007 Rmu_ssc0000231.1_g000010 Rmu_ssc0000233.1_g000059 Rmu_ssc0000233.1_g000061
rosa_roxburghii	Rroxscaffold_1G00002110 Rroxscaffold_1G00003320 Rroxscaffold_1G00012840 Rroxscaffold_1G00013850 Rroxscaffold_1G00023980 Rroxscaffold_1G00029750 Rroxscaffold_1G00033890 Rroxscaffold_1G00042470 Rroxscaffold_1G00053360 Rroxscaffold_1G00054060 Rroxscaffold_2G00076150 Rroxscaffold_2G00089750 Rroxscaffold_2G00152600 Rroxscaffold_4G00299540 Rroxscaffold_4G00320960 Rroxscaffold_5G00338640 Rroxscaffold_5G00376300 Rroxscaffold_5G00377680 Rroxscaffold_6G00394120 Rroxscaffold_7G00213820 Rroxscaffold_7G00215950 Rroxscaffold_7G00217790
rosa_rugosa	Rorug01G0075300 Rorug01G0094600 Rorug01G0094600 Rorug01G0101800.1 Rorug01G0309500 Rorug02G0256300 Rorug02G0465700 Rorug04G0045200 Rorug04G0091000 Rorug04G0091100 Rorug04G0091300 Rorug04G0178200 Rorug04G0450400 Rorug05G0144200 Rorug07G0202400 Rorug07G0326300
rosa_samantha	Rh1AG266500 Rh1AG296100 Rh1AG408600 Rh1BG257900 Rh1BG392900 Rh1BG393000 Rh1CG125400 Rh1CG149300 Rh1CG405500 Rh1DG423700 Rh1DG423800 Rh2AG369400 Rh2BG234000 Rh2BG334600 Rh2CG157900 Rh2CG232800 Rh3AG146000 Rh3AG161400 Rh3AG217200 Rh3AG329700 Rh3CG223900 Rh3CG320600 Rh3DG258400 Rh4AG105000 Rh4AG340300 Rh4BG026600 Rh4BG138500 Rh4CG113500 Rh4CG322400 Rh4DG203100 Rh5AG169100 Rh5AG372400 Rh5AG440400 Rh5BG194300 Rh5CG228700 Rh5CG263400 Rh5CG272000 Rh5CG579400 Rh5DG175100 Rh5DG472600 Rh5DG493400 Rh6AG418900 Rh6CG192400 Rh6CG450200 Rh6DG127600 Rh6DG193500 Rh6DG294100 Rh6DG320400 Rh6DG349400 Rh7AG364800 Rh7AG443300 Rh7DG198300 Rh7DG346300
rosa_wichuraiana	Rw0G003660 Rw0G004330 Rw0G020060 Rw0G020860 Rw0G021260 Rw1G001000 Rw1G001470 Rw1G001810 Rw1G005640 Rw1G006320 Rw1G010590 Rw1G013140 Rw1G016260 Rw1G016270 Rw1G016320 Rw1G017680 Rw1G019120 Rw1G021470 Rw1G027240 Rw1G028020 Rw1G030070 Rw2G003580 Rw2G007770 Rw2G012130 Rw2G012300 Rw2G013070 Rw2G014700 Rw2G017960 Rw2G028780 Rw2G034790 Rw2G035470 Rw2G036310 Rw2G039430 Rw2G040550 Rw2G042560 Rw3G005710 Rw3G010390 Rw3G012630 Rw3G015510 Rw3G016130 Rw3G020240 Rw3G020760 Rw3G021500 Rw3G023220 Rw3G026440 Rw3G026960 Rw3G029080 Rw3G029250 Rw4G001900 Rw4G004890 Rw4G005770 Rw4G006470 Rw4G008100 Rw4G009360 Rw4G009770 Rw4G014530 Rw4G015370 Rw4G023120 Rw5G002130 Rw5G006640 Rw5G014680 Rw5G015180 Rw5G016210 Rw5G019940 Rw5G026100 Rw5G029870 Rw5G034430 Rw5G035890 Rw5G041340 Rw5G048760 Rw5G048770 Rw6G004170 Rw6G007540 Rw6G007600 Rw6G009420 Rw6G010000 Rw6G020720 Rw6G022860 Rw7G007400 Rw7G007860 Rw7G027180 Rw7G032110 Rw7G033090 Rw7G034980 Rw7G036100 Rw7G036480 Rw7G036550

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1649
AatII	GACGTC	2 cut(s)	2913, 2943
Acc65I	GGTACC	1 cut(s)	939
AccB1I	GGYRCC	3 cut(s)	939, 1238, 2833
AccB7I	CCANNNNNTGG	2 cut(s)	467, 1433
AccBSI	CCGCTC	1 cut(s)	3185
AccI	GTMKAC	3 cut(s)	1018, 1549, 2104
AciI	CCGC	7 cut(s)	87, 2380, 2882, 2923, 3003, 3185, 3291
AclI	AACGTT	2 cut(s)	337, 1628
AclWI	GGATC	3 cut(s)	2201, 2632, 3508
AcsI	RAATTY	8 cut(s)	200, 227, 293, 464, 749, 1071, 2137, 2864
AcuI	CTGAAG	7 cut(s)	162, 732, 876, 1119, 1356, 2087, 2250
AcyI	GRCGYC	2 cut(s)	2910, 2940
AfaI	GTAC	9 cut(s)	408, 550, 941, 1760, 1781, 1855, 2258, 2826, 3029
AfiI	CCNNNNNNNGG	7 cut(s)	467, 1433, 2068, 2950, 3104, 3172, 3343
AflII	CTTAAG	1 cut(s)	2159
AflIII	ACRYGT	2 cut(s)	2074, 2960
AgeI	ACCGGT	1 cut(s)	936
AjnI	CCWGG	4 cut(s)	268, 634, 1936, 3372
AloI	GAACNNNNNNTCC	2 cut(s)	1710, 1742
Alw21I	GWGCWC	6 cut(s)	277, 539, 1683, 2023, 2168, 2854
Alw26I	GTCTC	4 cut(s)	716, 1847, 2575, 3281
Alw44I	GTGCAC	1 cut(s)	2850
AlwI	GGATC	3 cut(s)	2201, 2632, 3508
AlwNI	CAGNNNCTG	2 cut(s)	257, 869
Ama87I	CYCGRG	1 cut(s)	1109
AoxI	GGCC	5 cut(s)	206, 554, 637, 983, 1720
ApaLI	GTGCAC	1 cut(s)	2850
ApeKI	GCWGC	6 cut(s)	764, 971, 1709, 2035, 3332, 3365
ApoI	RAATTY	8 cut(s)	200, 227, 293, 464, 749, 1071, 2137, 2864
ArsI	GACNNNNNNTTYG	4 cut(s)	2253, 2285, 3008, 3040
AseI	ATTAAT	1 cut(s)	2184
AsiGI	ACCGGT	1 cut(s)	936
Asp718I	GGTACC	1 cut(s)	939
AspLEI	GCGC	1 cut(s)	1185
AspS9I	GGNCC	9 cut(s)	30, 206, 323, 638, 647, 1103, 1721, 2234, 2496
AsuC2I	CCSGG	1 cut(s)	651
AsuHPI	GGTGA	5 cut(s)	926, 1352, 1883, 2204, 2669
AvaI	CYCGRG	1 cut(s)	1109
AvaII	GGWCC	6 cut(s)	30, 323, 647, 1103, 2234, 2496
BaeGI	GKGCMC	1 cut(s)	2854
BanI	GGYRCC	3 cut(s)	939, 1238, 2833
BanII	GRGCYC	2 cut(s)	539, 2023
BarI	GAAGNNNNNNTAC	2 cut(s)	593, 625
BbsI	GAAGAC	3 cut(s)	1313, 1434, 2595
Bbv12I	GWGCWC	6 cut(s)	277, 539, 1683, 2023, 2168, 2854
BbvI	GCAGC	6 cut(s)	751, 958, 1721, 2022, 3319, 3352
BccI	CCATC	8 cut(s)	395, 503, 912, 1427, 1731, 2483, 2648, 3424
BceAI	ACGGC	2 cut(s)	55, 465
BciT130I	CCWGG	4 cut(s)	270, 636, 1938, 3374
BciVI	GTATCC	2 cut(s)	1755, 1817
BcnI	CCSGG	1 cut(s)	651
BcoDI	GTCTC	4 cut(s)	716, 1847, 2575, 3281
BfaI	CTAG	9 cut(s)	242, 494, 504, 878, 1193, 1893, 2132, 2574, 3452
BfmI	CTRYAG	1 cut(s)	360
BfrI	CTTAAG	1 cut(s)	2159
BfuI	GTATCC	2 cut(s)	1755, 1817
BisI	GCNGC	8 cut(s)	765, 972, 1710, 2036, 2883, 2924, 3333, 3366
BlsI	GCNGC	8 cut(s)	766, 973, 1711, 2037, 2884, 2925, 3334, 3367
Bme1390I	CCNGG	5 cut(s)	270, 636, 651, 1938, 3374
Bme18I	GGWCC	6 cut(s)	30, 323, 647, 1103, 2234, 2496
BmeT110I	CYCGRG	1 cut(s)	1109
BmgT120I	GGNCC	9 cut(s)	30, 206, 323, 638, 647, 1103, 1721, 2234, 2496
BmiI	GGNNCC	6 cut(s)	324, 649, 941, 1240, 2498, 2835
BmrFI	CCNGG	5 cut(s)	270, 636, 651, 1938, 3374
BmrI	ACTGGG	2 cut(s)	1718, 2561
BmsI	GCATC	7 cut(s)	127, 208, 238, 690, 721, 1180, 1509
BmuI	ACTGGG	2 cut(s)	1718, 2561
BoxI	GACNNNNGTC	1 cut(s)	2673
BpiI	GAAGAC	3 cut(s)	1313, 1434, 2595
BplI	GAGNNNNNCTC	2 cut(s)	1829, 1861
BpmI	CTGGAG	3 cut(s)	291, 414, 1344
BpuMI	CCSGG	1 cut(s)	651
Bsa29I	ATCGAT	1 cut(s)	1735
BsaAI	YACGTR	2 cut(s)	552, 2963
BsaBI	GATNNNNATC	1 cut(s)	258
BsaHI	GRCGYC	2 cut(s)	2910, 2940
BsaI	GGTCTC	1 cut(s)	3281
BsaJI	CCNNGG	6 cut(s)	26, 326, 587, 943, 2837, 3103
BsaWI	WCCGGW	3 cut(s)	812, 936, 1429
BsaXI	ACNNNNNCTCC	6 cut(s)	151, 181, 1710, 1740, 3174, 3204
Bsc4I	CCNNNNNNNGG	7 cut(s)	467, 1433, 2068, 2950, 3104, 3172, 3343
Bse118I	RCCGGY	1 cut(s)	936
Bse1I	ACTGG	5 cut(s)	845, 1724, 2314, 2567, 2828
Bse3DI	GCAATG	3 cut(s)	623, 1812, 3432
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	4 cut(s)	270, 636, 1938, 3374
BseCI	ATCGAT	1 cut(s)	1735
BseDI	CCNNGG	6 cut(s)	26, 326, 587, 943, 2837, 3103
BseGI	GGATG	7 cut(s)	142, 415, 1324, 1438, 1746, 2527, 2556
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	7 cut(s)	467, 1433, 2068, 2950, 3104, 3172, 3343
BseMI	GCAATG	3 cut(s)	623, 1812, 3432
BseMII	CTCAG	2 cut(s)	380, 2678
BseNI	ACTGG	5 cut(s)	845, 1724, 2314, 2567, 2828
BseRI	GAGGAG	3 cut(s)	2021, 2948, 3316
BseSI	GKGCMC	1 cut(s)	2854
BseXI	GCAGC	6 cut(s)	751, 958, 1721, 2022, 3319, 3352
Bsh1285I	CGRYCG	1 cut(s)	1553
BshFI	GGCC	5 cut(s)	208, 556, 639, 985, 1722
BshNI	GGYRCC	3 cut(s)	939, 1238, 2833
BshTI	ACCGGT	1 cut(s)	936
BshVI	ATCGAT	1 cut(s)	1735
BsiEI	CGRYCG	1 cut(s)	1553
BsiHKAI	GWGCWC	6 cut(s)	277, 539, 1683, 2023, 2168, 2854
BsiHKCI	CYCGRG	1 cut(s)	1109
BsiSI	CCGG	4 cut(s)	651, 813, 937, 1430
BsiWI	CGTACG	1 cut(s)	3027
BslFI	GGGAC	4 cut(s)	921, 1977, 2986, 3121
BslI	CCNNNNNNNGG	7 cut(s)	467, 1433, 2068, 2950, 3104, 3172, 3343
BsmAI	GTCTC	4 cut(s)	716, 1847, 2575, 3281
BsmFI	GGGAC	4 cut(s)	921, 1977, 2986, 3121
BsmI	GAATGC	2 cut(s)	379, 734
BsnI	GGCC	5 cut(s)	208, 556, 639, 985, 1722
Bso31I	GGTCTC	1 cut(s)	3281
BsoBI	CYCGRG	1 cut(s)	1109
Bsp1286I	GDGCHC	6 cut(s)	277, 539, 1683, 2023, 2168, 2854
Bsp143I	GATC	6 cut(s)	259, 2206, 2624, 3011, 3049, 3500
BspACI	CCGC	7 cut(s)	87, 2380, 2882, 2923, 3003, 3185, 3291
BspANI	GGCC	5 cut(s)	208, 556, 639, 985, 1722
BspCNI	CTCAG	2 cut(s)	381, 2677
BspDI	ATCGAT	1 cut(s)	1735
BspHI	TCATGA	3 cut(s)	151, 196, 2271
BspLI	GGNNCC	6 cut(s)	324, 649, 941, 1240, 2498, 2835
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	3 cut(s)	2201, 2632, 3508
BspQI	GCTCTTC	2 cut(s)	544, 684
BspT107I	GGYRCC	3 cut(s)	939, 1238, 2833
BspTI	CTTAAG	1 cut(s)	2159
BspTNI	GGTCTC	1 cut(s)	3281
BsrBI	CCGCTC	1 cut(s)	3185
BsrDI	GCAATG	3 cut(s)	623, 1812, 3432
BsrFI	RCCGGY	1 cut(s)	936
BsrI	ACTGG	5 cut(s)	845, 1724, 2314, 2567, 2828
BssAI	RCCGGY	1 cut(s)	936
BssECI	CCNNGG	6 cut(s)	26, 326, 587, 943, 2837, 3103
BssMI	GATC	6 cut(s)	259, 2206, 2624, 3011, 3049, 3500
BssNI	GRCGYC	2 cut(s)	2910, 2940
BssT1I	CCWWGG	4 cut(s)	26, 587, 2837, 3103
Bst2UI	CCWGG	4 cut(s)	270, 636, 1938, 3374
Bst4CI	ACNGT	6 cut(s)	944, 1950, 2045, 2256, 2371, 2891
Bst6I	CTCTTC	6 cut(s)	181, 544, 684, 1055, 1130, 1380
BstACI	GRCGYC	2 cut(s)	2910, 2940
BstAFI	CTTAAG	1 cut(s)	2159
BstAPI	GCANNNNNTGC	1 cut(s)	2035
BstBAI	YACGTR	2 cut(s)	552, 2963
BstC8I	GCNNGC	3 cut(s)	44, 762, 3197
BstDEI	CTNAG	4 cut(s)	389, 1349, 2664, 3119
BstDSI	CCRYGG	1 cut(s)	943
BstEII	GGTNACC	1 cut(s)	3093
BstENI	CCTNNNNNAGG	1 cut(s)	3102
BstF5I	GGATG	7 cut(s)	142, 415, 1324, 1438, 1746, 2527, 2556
BstHHI	GCGC	1 cut(s)	1185
BstKTI	GATC	6 cut(s)	262, 2209, 2627, 3014, 3052, 3503
BstMAI	GTCTC	4 cut(s)	716, 1847, 2575, 3281
BstMBI	GATC	6 cut(s)	259, 2206, 2624, 3011, 3049, 3500
BstMCI	CGRYCG	1 cut(s)	1553
BstMWI	GCNNNNNNNGC	6 cut(s)	700, 1706, 2035, 3002, 3260, 3431
BstNI	CCWGG	4 cut(s)	270, 636, 1938, 3374
BstNSI	RCATGY	3 cut(s)	25, 2033, 2078
BstPAI	GACNNNNGTC	1 cut(s)	2673
BstPI	GGTNACC	1 cut(s)	3093
BstSCI	CCNGG	5 cut(s)	268, 634, 649, 1936, 3372
BstSFI	CTRYAG	1 cut(s)	360
BstSLI	GKGCMC	1 cut(s)	2854
BstV1I	GCAGC	6 cut(s)	751, 958, 1721, 2022, 3319, 3352
BstV2I	GAAGAC	3 cut(s)	1313, 1434, 2595
BstX2I	RGATCY	1 cut(s)	3500
BstYI	RGATCY	1 cut(s)	3500
Bsu15I	ATCGAT	1 cut(s)	1735
BsuI	GTATCC	2 cut(s)	1755, 1817
BsuRI	GGCC	5 cut(s)	208, 556, 639, 985, 1722
BsuTUI	ATCGAT	1 cut(s)	1735
BtgI	CCRYGG	1 cut(s)	943
BtsCI	GGATG	7 cut(s)	142, 415, 1324, 1438, 1746, 2527, 2556
BtsIMutI	CAGTG	3 cut(s)	1221, 1946, 2835
Cac8I	GCNNGC	3 cut(s)	44, 762, 3197
CaiI	CAGNNNCTG	2 cut(s)	257, 869
CciI	TCATGA	3 cut(s)	151, 196, 2271
CfoI	GCGC	1 cut(s)	1185
Cfr10I	RCCGGY	1 cut(s)	936
Cfr13I	GGNCC	9 cut(s)	30, 206, 323, 638, 647, 1103, 1721, 2234, 2496
ClaI	ATCGAT	1 cut(s)	1735
Csp6I	GTAC	9 cut(s)	407, 549, 940, 1759, 1780, 1854, 2257, 2825, 3028
CspAI	ACCGGT	1 cut(s)	936
CspCI	CAANNNNNGTGG	2 cut(s)	3228, 3263
CviQI	GTAC	9 cut(s)	407, 549, 940, 1759, 1780, 1854, 2257, 2825, 3028
DdeI	CTNAG	4 cut(s)	389, 1349, 2664, 3119
DpnI	GATC	6 cut(s)	261, 2208, 2626, 3013, 3051, 3502
DpnII	GATC	6 cut(s)	259, 2206, 2624, 3011, 3049, 3500
Eam1104I	CTCTTC	6 cut(s)	181, 544, 684, 1055, 1130, 1380
EarI	CTCTTC	6 cut(s)	181, 544, 684, 1055, 1130, 1380
EciI	GGCGGA	1 cut(s)	76
Ecl136II	GAGCTC	2 cut(s)	537, 2021
Eco130I	CCWWGG	4 cut(s)	26, 587, 2837, 3103
Eco147I	AGGCCT	1 cut(s)	985
Eco24I	GRGCYC	2 cut(s)	539, 2023
Eco31I	GGTCTC	1 cut(s)	3281
Eco32I	GATATC	3 cut(s)	1355, 2428, 3130
Eco47I	GGWCC	6 cut(s)	30, 323, 647, 1103, 2234, 2496
Eco53kI	GAGCTC	2 cut(s)	537, 2021
Eco57I	CTGAAG	7 cut(s)	162, 732, 876, 1119, 1356, 2087, 2250
Eco88I	CYCGRG	1 cut(s)	1109
Eco91I	GGTNACC	1 cut(s)	3093
EcoICRI	GAGCTC	2 cut(s)	537, 2021
EcoNI	CCTNNNNNAGG	1 cut(s)	3102
EcoO109I	RGGNCCY	2 cut(s)	323, 647
EcoO65I	GGTNACC	1 cut(s)	3093
EcoRII	CCWGG	4 cut(s)	268, 634, 1936, 3372
EcoRV	GATATC	3 cut(s)	1355, 2428, 3130
EcoT14I	CCWWGG	4 cut(s)	26, 587, 2837, 3103
EcoT22I	ATGCAT	3 cut(s)	599, 736, 1206
EcoT38I	GRGCYC	2 cut(s)	539, 2023
ErhI	CCWWGG	4 cut(s)	26, 587, 2837, 3103
FalI	AAGNNNNNCTT	2 cut(s)	1607, 1639
FaqI	GGGAC	4 cut(s)	921, 1977, 2986, 3121
FauI	CCCGC	1 cut(s)	3178
FauNDI	CATATG	3 cut(s)	727, 799, 3211
FblI	GTMKAC	3 cut(s)	1018, 1549, 2104
Fnu4HI	GCNGC	8 cut(s)	765, 972, 1710, 2036, 2883, 2924, 3333, 3366
FokI	GGATG	7 cut(s)	149, 402, 1311, 1445, 1753, 2534, 2543
FriOI	GRGCYC	2 cut(s)	539, 2023
Fsp4HI	GCNGC	8 cut(s)	765, 972, 1710, 2036, 2883, 2924, 3333, 3366
FspBI	CTAG	9 cut(s)	242, 494, 504, 878, 1193, 1893, 2132, 2574, 3452
GlaI	GCGC	1 cut(s)	1184
GluI	GCNGC	8 cut(s)	765, 972, 1710, 2036, 2883, 2924, 3333, 3366
GsuI	CTGGAG	3 cut(s)	291, 414, 1344
HaeIII	GGCC	5 cut(s)	208, 556, 639, 985, 1722
HapII	CCGG	4 cut(s)	651, 813, 937, 1430
HhaI	GCGC	1 cut(s)	1185
Hin1I	GRCGYC	2 cut(s)	2910, 2940
Hin6I	GCGC	1 cut(s)	1183
HinP1I	GCGC	1 cut(s)	1183
HincII	GTYRAC	4 cut(s)	1550, 1998, 2105, 3387
HindII	GTYRAC	4 cut(s)	1550, 1998, 2105, 3387
HindIII	AAGCTT	2 cut(s)	287, 837
HinfI	GANTC	7 cut(s)	365, 425, 866, 1498, 1880, 2120, 2532
HpaI	GTTAAC	1 cut(s)	1998
HpaII	CCGG	4 cut(s)	651, 813, 937, 1430
HphI	GGTGA	5 cut(s)	926, 1352, 1883, 2204, 2669
Hpy188I	TCNGA	9 cut(s)	181, 413, 1012, 1099, 1466, 1607, 1934, 2125, 2496
Hpy99I	CGWCG	2 cut(s)	1551, 2109
HpyCH4III	ACNGT	6 cut(s)	944, 1950, 2045, 2256, 2371, 2891
HpyF10VI	GCNNNNNNNGC	6 cut(s)	700, 1706, 2035, 3002, 3260, 3431
HpyF3I	CTNAG	4 cut(s)	389, 1349, 2664, 3119
Hsp92I	GRCGYC	2 cut(s)	2910, 2940
HspAI	GCGC	1 cut(s)	1183
KpnI	GGTACC	1 cut(s)	943
KspAI	GTTAAC	1 cut(s)	1998
Kzo9I	GATC	6 cut(s)	259, 2206, 2624, 3011, 3049, 3500
LguI	GCTCTTC	2 cut(s)	544, 684
LmnI	GCTCC	6 cut(s)	272, 1168, 1678, 2726, 3182, 3400
Lsp1109I	GCAGC	6 cut(s)	751, 958, 1721, 2022, 3319, 3352
LweI	GCATC	7 cut(s)	127, 208, 238, 690, 721, 1180, 1509
MaeI	CTAG	9 cut(s)	242, 494, 504, 878, 1193, 1893, 2132, 2574, 3452
MalI	GATC	6 cut(s)	261, 2208, 2626, 3013, 3051, 3502
MbiI	CCGCTC	1 cut(s)	3185
MboI	GATC	6 cut(s)	259, 2206, 2624, 3011, 3049, 3500
MfeI	CAATTG	5 cut(s)	186, 1536, 1610, 2603, 2976
MflI	RGATCY	1 cut(s)	3500
MhlI	GDGCHC	6 cut(s)	277, 539, 1683, 2023, 2168, 2854
MlyI	GAGTC	3 cut(s)	875, 1507, 2114
MmeI	TCCRAC	3 cut(s)	436, 2474, 3035
Mph1103I	ATGCAT	3 cut(s)	599, 736, 1206
MslI	CAYNNNNRTG	1 cut(s)	2028
MspCI	CTTAAG	1 cut(s)	2159
MspI	CCGG	4 cut(s)	651, 813, 937, 1430
MspR9I	CCNGG	5 cut(s)	270, 636, 651, 1938, 3374
MunI	CAATTG	5 cut(s)	186, 1536, 1610, 2603, 2976
Mva1269I	GAATGC	2 cut(s)	379, 734
MvaI	CCWGG	4 cut(s)	270, 636, 1938, 3374
MwoI	GCNNNNNNNGC	6 cut(s)	700, 1706, 2035, 3002, 3260, 3431
NciI	CCSGG	1 cut(s)	651
NdeI	CATATG	3 cut(s)	727, 799, 3211
NdeII	GATC	6 cut(s)	259, 2206, 2624, 3011, 3049, 3500
NlaIV	GGNNCC	6 cut(s)	324, 649, 941, 1240, 2498, 2835
NmuCI	GTSAC	5 cut(s)	348, 1219, 1340, 1499, 1634
NsiI	ATGCAT	3 cut(s)	599, 736, 1206
NspI	RCATGY	3 cut(s)	25, 2033, 2078
PagI	TCATGA	3 cut(s)	151, 196, 2271
PceI	AGGCCT	1 cut(s)	985
PciI	ACATGT	1 cut(s)	2074
PciSI	GCTCTTC	2 cut(s)	544, 684
PcsI	WCGNNNNNNNCGW	1 cut(s)	334
PctI	GAATGC	2 cut(s)	379, 734
PfeI	GAWTC	4 cut(s)	365, 425, 1880, 2532
Pfl23II	CGTACG	1 cut(s)	3027
PflFI	GACNNNGTC	1 cut(s)	2639
PflMI	CCANNNNNTGG	2 cut(s)	467, 1433
PfoI	TCCNGGA	1 cut(s)	268
PinAI	ACCGGT	1 cut(s)	936
PkrI	GCNGC	8 cut(s)	766, 973, 1711, 2037, 2884, 2925, 3334, 3367
PleI	GAGTC	3 cut(s)	874, 1506, 2114
PpsI	GAGTC	3 cut(s)	874, 1506, 2114
Ppu21I	YACGTR	2 cut(s)	552, 2963
PpuMI	RGGWCCY	2 cut(s)	323, 647
PscI	ACATGT	1 cut(s)	2074
PshAI	GACNNNNGTC	1 cut(s)	2673
PshBI	ATTAAT	1 cut(s)	2184
PsiI	TTATAA	1 cut(s)	1649
Psp124BI	GAGCTC	2 cut(s)	539, 2023
Psp1406I	AACGTT	2 cut(s)	337, 1628
Psp5II	RGGWCCY	2 cut(s)	323, 647
Psp6I	CCWGG	4 cut(s)	268, 634, 1936, 3372
PspEI	GGTNACC	1 cut(s)	3093
PspGI	CCWGG	4 cut(s)	268, 634, 1936, 3372
PspLI	CGTACG	1 cut(s)	3027
PspN4I	GGNNCC	6 cut(s)	324, 649, 941, 1240, 2498, 2835
PspPI	GGNCC	9 cut(s)	30, 206, 323, 638, 647, 1103, 1721, 2234, 2496
PspPPI	RGGWCCY	2 cut(s)	323, 647
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	2 cut(s)	257, 869
PsuI	RGATCY	1 cut(s)	3500
PsyI	GACNNNGTC	1 cut(s)	2639
RsaI	GTAC	9 cut(s)	408, 550, 941, 1760, 1781, 1855, 2258, 2826, 3029
RsaNI	GTAC	9 cut(s)	407, 549, 940, 1759, 1780, 1854, 2257, 2825, 3028
RseI	CAYNNNNRTG	1 cut(s)	2028
SacI	GAGCTC	2 cut(s)	539, 2023
SalI	GTCGAC	2 cut(s)	1548, 2103
SapI	GCTCTTC	2 cut(s)	544, 684
SatI	GCNGC	8 cut(s)	765, 972, 1710, 2036, 2883, 2924, 3333, 3366
Sau3AI	GATC	6 cut(s)	259, 2206, 2624, 3011, 3049, 3500
Sau96I	GGNCC	9 cut(s)	30, 206, 323, 638, 647, 1103, 1721, 2234, 2496
SchI	GAGTC	3 cut(s)	875, 1507, 2114
ScrFI	CCNGG	5 cut(s)	270, 636, 651, 1938, 3374
SduI	GDGCHC	6 cut(s)	277, 539, 1683, 2023, 2168, 2854
SfaNI	GCATC	7 cut(s)	127, 208, 238, 690, 721, 1180, 1509
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	6 cut(s)	30, 323, 647, 1103, 2234, 2496
SmiMI	CAYNNNNRTG	1 cut(s)	2028
SmlI	CTYRAG	1 cut(s)	2159
SmoI	CTYRAG	1 cut(s)	2159
SseBI	AGGCCT	1 cut(s)	985
SsiI	CCGC	7 cut(s)	87, 2380, 2882, 2923, 3003, 3185, 3291
SspI	AATATT	3 cut(s)	661, 1450, 1526
SspMI	CTAG	9 cut(s)	242, 494, 504, 878, 1193, 1893, 2132, 2574, 3452
SstI	GAGCTC	2 cut(s)	539, 2023
StuI	AGGCCT	1 cut(s)	985
StyD4I	CCNGG	5 cut(s)	268, 634, 649, 1936, 3372
StyI	CCWWGG	4 cut(s)	26, 587, 2837, 3103
TaaI	ACNGT	6 cut(s)	944, 1950, 2045, 2256, 2371, 2891
TaqII	GACCGA	1 cut(s)	1567
TatI	WGTACW	1 cut(s)	1853
TauI	GCSGC	2 cut(s)	2885, 2926
TfiI	GAWTC	4 cut(s)	365, 425, 1880, 2532
TscAI	CASTG	3 cut(s)	1228, 1953, 2835
TseFI	GTSAC	5 cut(s)	348, 1219, 1340, 1499, 1634
TseI	GCWGC	6 cut(s)	764, 971, 1709, 2035, 3332, 3365
Tsp45I	GTSAC	5 cut(s)	348, 1219, 1340, 1499, 1634
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	3 cut(s)	1228, 1953, 2835
Tth111I	GACNNNGTC	1 cut(s)	2639
Van91I	CCANNNNNTGG	2 cut(s)	467, 1433
Vha464I	CTTAAG	1 cut(s)	2159
VneI	GTGCAC	1 cut(s)	2850
VpaK11BI	GGWCC	6 cut(s)	30, 323, 647, 1103, 2234, 2496
VspI	ATTAAT	1 cut(s)	2184
XagI	CCTNNNNNAGG	1 cut(s)	3102
XapI	RAATTY	8 cut(s)	200, 227, 293, 464, 749, 1071, 2137, 2864
XbaI	TCTAGA	2 cut(s)	1192, 2573
XceI	RCATGY	3 cut(s)	25, 2033, 2078
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1434, 2651
XmiI	GTMKAC	3 cut(s)	1018, 1549, 2104
XspI	CTAG	9 cut(s)	242, 494, 504, 878, 1193, 1893, 2132, 2574, 3452
ZraI	GACGTC	2 cut(s)	2911, 2941
Zsp2I	ATGCAT	3 cut(s)	599, 736, 1206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.